Variant report

Variant	nsv831838
Chromosome Location	chr10:39018191-39062690
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:188)
CpG islands
(count:428)
Chromatin interactive
region (count:0)
LncRNA
region (count:10)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:188 , 50 per page) page: 1 2 3 4

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	BATF	chr10:39056264-39056575	GM12878	blood:	n/a	chr10:39056419-39056430
2	BATF	chr10:39026887-39027079	GM12878	blood:	n/a	n/a
3	BCL11A	chr10:39057780-39057946	GM12878	blood:	n/a	n/a
4	BCL11A	chr10:39055155-39055331	GM12878	blood:	n/a	n/a
5	CEBPB	chr10:39037900-39037952	A549	lung:	n/a	n/a
6	CTCF	chr10:39062460-39062511	GM10248	blood:	n/a	n/a
7	CTCF	chr10:39038829-39038908	LNCaP	prostate:	n/a	n/a
8	CTCF	chr10:39040660-39040679	Kidney_OC	kidney:	n/a	n/a
9	CTCF	chr10:39022260-39022342	GM13976	blood:	n/a	n/a
10	EBF1	chr10:39051970-39052126	GM12878	blood:	n/a	n/a
11	EBF1	chr10:39058913-39059126	GM12878	blood:	n/a	n/a
12	EP300	chr10:39053300-39053780	GM12878	blood:	n/a	chr10:39053310-39053324
13	EP300	chr10:39057630-39058234	GM12878	blood:	n/a	n/a
14	EP300	chr10:39055105-39055340	GM12878	blood:	n/a	chr10:39055206-39055215
15	EP300	chr10:39022205-39022475	GM12878	blood:	n/a	n/a
16	FOS	chr10:39048012-39048048	MCF10A-Er-Src	breast:	n/a	n/a
17	FOS	chr10:39048030-39048048	MCF10A-Er-Src	breast:	n/a	n/a
18	FOSL2	chr10:39047741-39048392	HepG2	liver:	n/a	chr10:39048064-39048075 chr10:39048067-39048075 chr10:39048066-39048076 chr10:39048065-39048077 chr10:39048066-39048076
19	FOSL2	chr10:39025556-39025786	HepG2	liver:	n/a	n/a
20	FOSL2	chr10:39022104-39022588	HepG2	liver:	n/a	n/a
21	FOSL2	chr10:39062371-39062631	HepG2	liver:	n/a	n/a
22	FOSL2	chr10:39054913-39055362	HepG2	liver:	n/a	chr10:39055208-39055215 chr10:39055206-39055216 chr10:39055207-39055215 chr10:39055206-39055216 chr10:39055207-39055215 chr10:39055206-39055216 chr10:39055206-39055216
23	FOSL2	chr10:39053450-39053859	HepG2	liver:	n/a	n/a
24	FOSL2	chr10:39047876-39048538	HepG2	liver:	n/a	chr10:39048064-39048075 chr10:39048067-39048075 chr10:39048066-39048076 chr10:39048065-39048077 chr10:39048066-39048076
25	FOSL2	chr10:39022052-39022486	HepG2	liver:	n/a	n/a
26	FOSL2	chr10:39059468-39059798	HepG2	liver:	n/a	n/a
27	FOSL2	chr10:39054980-39055386	HepG2	liver:	n/a	chr10:39055208-39055215 chr10:39055206-39055216 chr10:39055207-39055215 chr10:39055206-39055216 chr10:39055207-39055215 chr10:39055206-39055216 chr10:39055206-39055216
28	FOSL2	chr10:39053524-39053810	HepG2	liver:	n/a	n/a
29	FOXA1	chr10:39048320-39048724	HepG2	liver:	n/a	n/a
30	FOXA1	chr10:39021989-39022591	HepG2	liver:	n/a	n/a
31	FOXA2	chr10:39047806-39048666	A549	lung:	n/a	n/a
32	FOXA2	chr10:39022174-39022450	A549	lung:	n/a	n/a
33	GABPA	chr10:39035409-39035605	Hela-S3	cervix:	n/a	n/a
34	GABPA	chr10:39053663-39053782	Hela-S3	cervix:	n/a	n/a
35	GABPA	chr10:39048048-39048262	Hela-S3	cervix:	n/a	n/a
36	GABPA	chr10:39051960-39052158	Hela-S3	cervix:	n/a	n/a
37	GABPA	chr10:39035470-39035614	Hela-S3	cervix:	n/a	n/a
38	GABPA	chr10:39057857-39058084	Hela-S3	cervix:	n/a	n/a
39	GABPA	chr10:39057600-39057736	Hela-S3	cervix:	n/a	n/a
40	GABPA	chr10:39048050-39048334	Hela-S3	cervix:	n/a	n/a
41	GATA2	chr10:39038305-39038667	K562	blood:	n/a	n/a
42	GATA2	chr10:39037477-39037764	K562	blood:	n/a	n/a
43	GATA2	chr10:39038935-39039176	K562	blood:	n/a	n/a
44	GATA2	chr10:39037938-39038277	K562	blood:	n/a	n/a
45	GATA2	chr10:39039407-39039684	K562	blood:	n/a	n/a
46	GATA2	chr10:39047756-39048080	K562	blood:	n/a	chr10:39048065-39048074
47	HEY1	chr10:39022208-39022491	HepG2	liver:	n/a	n/a
48	HEY1	chr10:39022237-39022561	K562	blood:	n/a	n/a
49	HEY1	chr10:39048055-39048258	HepG2	liver:	n/a	n/a
50	IRF4	chr10:39057582-39057969	GM12878	blood:	n/a	n/a

(count:428 , 50 per page) page: 1 2 3 4 5 6 7 ... 9

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr10:39023095-39023145	HIPEpiC	eye:	n/a
2	chr10:39023095-39023145	HIPEpiC	eye:	n/a
3	chr10:39024195-39024245	U87	brain:	n/a
4	chr10:39023676-39023726	BE2_C	brain:	n/a
5	chr10:39020983-39021033	NB4	blood:	n/a
6	chr10:39020983-39021033	NH-A	brain:	n/a
7	chr10:39020983-39021033	HEK293	kidney:	embryo
8	chr10:39023045-39023095	U87	brain:	n/a
9	chr10:39023095-39023145	LNCaP	prostate:	n/a
10	chr10:39024087-39024137	HCT-116	colon:	n/a
11	chr10:39023676-39023726	HRPEpiC	eye:	n/a
12	chr10:39023676-39023726	HCT-116	colon:	n/a
13	chr10:39023768-39023818	SK-N-SH_RA	brain:	n/a
14	chr10:39023095-39023145	HCPEpiC	choroid plexus:	n/a
15	chr10:39024195-39024245	HRCEpiC	kidney:	n/a
16	chr10:39020983-39021033	A549	lung:	n/a
17	chr10:39024087-39024137	HEEpiC	esophagus:	n/a
18	chr10:39023676-39023726	NH-A	brain:	n/a
19	chr10:39024087-39024137	HUVEC	blood vessel:	n/a
20	chr10:39023676-39023726	A549	lung:	n/a
21	chr10:39023768-39023818	CMK	blood:	n/a
22	chr10:39023676-39023726	HNPCEpiC	eye:	n/a
23	chr10:39023768-39023818	AG04449	skin:	fetal
24	chr10:39023095-39023145	AG10803	skin:	n/a
25	chr10:39020983-39021033	HCT-116	colon:	n/a
26	chr10:39020983-39021033	HRCEpiC	kidney:	n/a
27	chr10:39023095-39023145	GM12878	blood:	n/a
28	chr10:39023768-39023818	PrEC	prostate:	n/a
29	chr10:39024087-39024137	LNCaP	prostate:	n/a
30	chr10:39024087-39024137	SK-N-SH	brain:	n/a
31	chr10:39024195-39024245	IMR90	lung:	fetal
32	chr10:39023095-39023145	AG09309	skin:	n/a
33	chr10:39023045-39023095	NB4	blood:	n/a
34	chr10:39024087-39024137	AG10803	skin:	n/a
35	chr10:39023095-39023145	HUVEC	blood vessel:	n/a
36	chr10:39023768-39023818	HepG2	liver:	n/a
37	chr10:39020983-39021033	AG04450	lung:	fetal
38	chr10:39024195-39024245	AG09319	gingival:	n/a
39	chr10:39023045-39023095	T-47D	breast:	n/a
40	chr10:39024087-39024137	HCPEpiC	choroid plexus:	n/a
41	chr10:39020983-39021033	NT2-D1	testis:	n/a
42	chr10:39020983-39021033	AG04449	skin:	fetal
43	chr10:39023676-39023726	SKMC	muscle:	n/a
44	chr10:39023095-39023145	BE2_C	brain:	n/a
45	chr10:39020983-39021033	HCF	heart:	n/a
46	chr10:39023768-39023818	HPAEpiC	pulmonary alveolar:	n/a
47	chr10:39024195-39024245	SK-N-MC	brain:	n/a
48	chr10:39020983-39021033	AG10803	skin:	n/a
49	chr10:39023676-39023726	RPTEC	kidney:	n/a
50	chr10:39024087-39024137	A549	lung:	n/a

No data

(count:10 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ZNF37A-18	chr10:39046332-39046418	NONHSAT012840
2	lnc-ZNF37A-18	chr10:39052289-39052613	NONHSAT012840
3	lnc-ZNF37A-18	chr10:39051186-39051266	NONHSAT012840
4	lnc-ZNF37A-18	chr10:39050990-39051266	NONHSAT012841
5	lnc-SEPT7L-2	chr10:39019400-39019542	NONHSAT012838
6	lnc-SEPT7L-2	chr10:39019400-39019542	NONHSAT012836
7	lnc-SEPT7L-2	chr10:39022035-39022206	NONHSAT012836
8	lnc-SEPT7L-6	chr10:39055226-39055622	NONHSAT012842
9	lnc-ZNF37A-18	chr10:39052289-39052513	NONHSAT012841
10	lnc-SEPT7L-2	chr10:39022035-39022206	NONHSAT012838

No data

Variant related genes	Relation type
ENSG00000227679	TF binding region
ENSG00000227679	CpG island

Extended variants
information (count: 1033 )
Associated
traits (count: 40 )

Variant overlapped rSNPs/rCNVs (count:1033 , 50 per page) page: 1 2 3 4 5 6 7 ... 21

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs560083072	chr10:39019466-39019467	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
2	rs200013808	chr10:39019467-39019468	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
3	rs529271857	chr10:39019471-39019472	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
4	rs71500453	chr10:39019486-39019487	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
5	rs569261242	chr10:39019487-39019488	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
6	rs531524651	chr10:39019495-39019496	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
7	rs551314636	chr10:39019501-39019502	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
8	rs571502873	chr10:39019505-39019506	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
9	rs534044009	chr10:39019520-39019521	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
10	rs374155484	chr10:39019524-39019525	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
11	rs554129856	chr10:39019536-39019537	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
12	rs528702436	chr10:39022042-39022043	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
13	rs542467660	chr10:39022059-39022060	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
14	rs562284413	chr10:39022065-39022066	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
15	rs4092371	chr10:39022095-39022096	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
16	rs4092370	chr10:39022119-39022120	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
17	rs4092369	chr10:39022120-39022121	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
18	rs530930409	chr10:39022127-39022128	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
19	rs550726263	chr10:39022139-39022140	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
20	rs570592880	chr10:39022200-39022201	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
21	rs547688395	chr10:39023209-39023210	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
22	rs553245266	chr10:39023226-39023227	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
23	rs536251232	chr10:39023227-39023228	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
24	rs10781595	chr10:39023235-39023236	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
25	rs569460965	chr10:39023243-39023244	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
26	rs538029437	chr10:39023248-39023249	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
27	rs557966548	chr10:39023264-39023265	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
28	rs117992367	chr10:39023288-39023289	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
29	rs201794156	chr10:39023306-39023307	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
30	rs10781596	chr10:39023315-39023316	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
31	rs554452111	chr10:39023318-39023319	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
32	rs35143038	chr10:39023327-39023328	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
33	rs11146646	chr10:39023368-39023369	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
34	rs556360217	chr10:39023372-39023373	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
35	rs7901926	chr10:39023378-39023379	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
36	rs545531687	chr10:39023384-39023385	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
37	rs66795884	chr10:39023385-39023386	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
38	rs565045685	chr10:39023393-39023394	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
39	rs527485337	chr10:39023423-39023424	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
40	rs540927483	chr10:39023424-39023425	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
41	rs561276016	chr10:39023428-39023429	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
42	rs180700644	chr10:39023432-39023433	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
43	rs375551900	chr10:39023439-39023440	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
44	rs143791973	chr10:39023442-39023443	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
45	rs575473323	chr10:39023453-39023454	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
46	rs551877906	chr10:39023459-39023460	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
47	rs571463501	chr10:39023470-39023471	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
48	rs534415708	chr10:39023471-39023472	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
49	rs554161310	chr10:39023489-39023490	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
50	rs567975081	chr10:39023497-39023498	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:40)

Disease	PMID	Source
Endometrioid adenocarcinoma	16974079	CNVD
Breast cancer	17603634	CNVD
Endometrial cancer	22040021	CNVD
Glioblastoma multiforme	21080181	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Phyllodes tumor	17334353	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Lung cancer	18438408	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Ewing''s sarcoma	17952124	CNVD
Oral cancer	21386901	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Breast cancer	21858162	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
T-cell lymphomas	19863542	CNVD
Esophageal cancer	21851588	CNVD
Non-muscle invasive bladder neoplasm	19445696	CNVD
Prostate cancer	18632612	CNVD
Glioblastoma multiforme	22286061	CNVD
Colorectal cancer	20459617	CNVD
Ovine squamous-cell carcinoma	17599052	CNVD
Central neurocytomas	17123091	CNVD
Neurocytoma	17123091	CNVD
small cell lung cancer	20016488	CNVD
Schizophrenia	20967226	CNVD
Myelofibrosis	22110671	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
Breast cancer	21509527	CNVD
Breast cancer	22522925	CNVD

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:39023200-39024000	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr10:39029800-39031600	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
3	chr10:39029800-39033800	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr10:39034400-39035800	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr10:39034400-39036000	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr10:39034600-39036000	ZNF genes & repeats	Pancreas	Pancrea

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