Variant report

Variant	nsv832668
Chromosome Location	chr13:86234885-86364254
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:4)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr13:86347061..86348731-chr13:86356799..86359631,2	MCF-7	breast:
2	chr13:86347061..86348731-chr13:86356799..86359631,2	MCF-7	breast:
3	chr13:86279490..86281664-chr13:86283799..86286531,3	MCF-7	breast:
4	chr13:86315676..86316552-chr3:64273618..64274256,2	MCF-7	breast:
5	chr13:86281640..86283292-chr13:86288920..86291298,2	MCF-7	breast:
6	chr13:86357425..86360138-chr13:86366494..86368418,2	MCF-7	breast:
7	chr13:86281640..86283292-chr13:86288920..86291298,2	MCF-7	breast:
8	chr13:86279490..86281664-chr13:86283799..86286531,3	MCF-7	breast:
9	chr13:86155275..86157872-chr13:86359223..86361897,2	MCF-7	breast:

(count:4 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-SLITRK5-30	chr13:86250665-86250748	NONHSAT034569
2	lnc-SLITRK5-30	chr13:86240824-86240895	NONHSAT034569
3	lnc-SLITRK5-29	chr13:86362174-86362237	NONHSAT034570
4	lnc-SLITRK5-30	chr13:86270269-86270344	NONHSAT034569

No data

Extended variants
information (count: 5349 )
Associated
traits (count: 90 )

Variant overlapped rSNPs/rCNVs (count:5349 , 50 per page) page: 1 2 3 4 5 6 7 ... 107

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs139333619	chr13:86234977-86234978	Weak transcription Strong transcription Enhancers Active TSS	n/a	n/a	Overlapped CNVs	n/a
2	rs536876868	chr13:86235023-86235024	Weak transcription Strong transcription Enhancers Active TSS	n/a	n/a	Overlapped CNVs	n/a
3	rs531419479	chr13:86235133-86235134	Weak transcription Strong transcription Enhancers Active TSS	n/a	n/a	Overlapped CNVs	n/a
4	rs72629560	chr13:86235149-86235150	Weak transcription Strong transcription Enhancers Active TSS	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
5	rs150011887	chr13:86235268-86235269	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs559441765	chr13:86235336-86235337	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs146573824	chr13:86235339-86235340	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs9531816	chr13:86235350-86235351	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
9	rs564042975	chr13:86235386-86235387	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs531103785	chr13:86235404-86235405	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs34035246	chr13:86235416-86235417	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs562305247	chr13:86235451-86235452	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs367606751	chr13:86235466-86235467	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs144962204	chr13:86235472-86235473	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs193068831	chr13:86235474-86235475	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs113719513	chr13:86235490-86235491	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs528953538	chr13:86235533-86235534	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs547469222	chr13:86235538-86235539	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs536739228	chr13:86235568-86235569	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs534107107	chr13:86235572-86235573	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs185744012	chr13:86235612-86235613	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs558767455	chr13:86235628-86235629	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs371643372	chr13:86235639-86235640	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs551367704	chr13:86235690-86235691	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs376730974	chr13:86235712-86235713	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs577149439	chr13:86235718-86235719	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
27	rs2039661	chr13:86235722-86235723	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
28	rs78805870	chr13:86235773-86235774	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
29	rs57383651	chr13:86235797-86235798	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
30	rs72629562	chr13:86235843-86235844	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
31	rs189877304	chr13:86235893-86235894	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
32	rs74855755	chr13:86235912-86235913	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
33	rs567128634	chr13:86235914-86235915	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
34	rs534790207	chr13:86235918-86235919	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
35	rs553472434	chr13:86235932-86235933	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
36	rs576240287	chr13:86235980-86235981	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
37	rs140423579	chr13:86236019-86236020	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
38	rs181931221	chr13:86236022-86236023	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
39	rs575974139	chr13:86236024-86236025	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
40	rs543351330	chr13:86236058-86236059	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
41	rs561419143	chr13:86236161-86236162	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
42	rs528740732	chr13:86236220-86236221	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
43	rs370809678	chr13:86236309-86236310	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
44	rs143590497	chr13:86236314-86236315	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
45	rs556224446	chr13:86236321-86236322	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
46	rs532910392	chr13:86236337-86236338	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
47	rs183996355	chr13:86236411-86236412	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
48	rs569321854	chr13:86236429-86236430	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
49	rs574308315	chr13:86236433-86236434	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
50	rs530671096	chr13:86236562-86236563	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:90)

Disease	PMID	Source
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	21080181	CNVD
HIV/AIDS	22032296	CNVD
Prostate cancer	16705090	CNVD
High-proliferative meningiomas	17937814	CNVD
Cancer	20164919	CNVD
Autism	22495311	CNVD
Chordoma	21602918	CNVD
Bladder cancer	21949216	CNVD
Acute myeloid leukemia	16864856	CNVD
Burkitt''s lymphoma	18698080	CNVD
Cancer	21637783	CNVD
Medulloblastoma	21979893	CNVD
Chronic lymphocytic leukemia	21518781	CNVD
colon cancer	17210682	CNVD
Endometrial cancer	22040021	CNVD
Colorectal cancer	20709793	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	17387387	CNVD
Hepatocellular carcinoma	22174799	CNVD
Ovarian cancer	20844748	CNVD
Colorectal cancer	19359472	CNVD
Intracranial aneurysm	19064780	CNVD
Breast cancer	19287154	CNVD
Acute myeloid leukemia	18379011	CNVD
Human rectal carcinomas	16397240	CNVD
Olfactory neuroblastoma	18408657	CNVD
Multiple myeloma	17077331	CNVD
Ependymoma	16718352	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Colorectal cancer	16272173	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Breast cancer	16608533	CNVD
Neuroblastoma	18923191	CNVD
Ovarian cancer	22174824	CNVD
Breast cancer	17133270	CNVD
Myoepithelioma	18604193	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Prostate cancer	18632612	CNVD
Colorectal cancer	21586687	CNVD
Small bowel adenocarcinoma	21586687	CNVD
Developmental delay	21147756	CNVD
Melanoma	18172304	CNVD
Prostate cancer	16573809	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Basal cell lymphoma	17053054	CNVD
Non-syndromic sensorineural hearing loss	18496225	CNVD
Metanephric adenoma	20802469	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Gastric cancer	17908304	CNVD
Splenic marginal zone lymphoma	18492102	CNVD
Liposarcoma	21253554	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Chronic lymphocytic leukemia	20421269	CNVD
Acute lymphoblastic leukemia	21980252	CNVD
Acute myeloid leukemia	20729466	CNVD
abnormal development	18461090	CNVD
small cell lung cancer	20016488	CNVD
Lung cancer	18438408	CNVD
Non-syndromic sensorineural hearing loss	20606397	CNVD
Congenital anomalies of the kidney and urinary tract	18316590	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Esophageal cancer	21851588	CNVD
Prostate cancer	21965145	CNVD
Gastrointestinal stromal cancer	20818650	CNVD
Myelofibrosis	22110671	CNVD
Glioblastoma multiforme	22286061	CNVD
Barrett''s adenocarcinoma	18663352	CNVD
Urothelial cell carcinoma	18451213	CNVD
Developmental delay	19490664	CNVD
Neurodevelopmental disorder	22521361	CNVD
Cancer	21220470	CNVD
Cancer	21183584	CNVD
Omodysplasia	19481194	CNVD
Breast cancer	22032731	CNVD
Congenital anomalies of the kidney and urinary tract	20467480	CNVD
Cancer	17160897	CNVD
Mantle cell lymphoma	19690137	CNVD
Rhabdomyosarcoma	17210683	CNVD
Ovarian clear cell carcinoma	21343371	CNVD
Non-syndromic sensorineural hearing loss	21293372	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD

Chromatin state (count:187 , 50 per page) page: 1 2 3 4

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:86231400-86235600	Weak transcription	Rectal Smooth Muscle	rectum
2	chr13:86233400-86235600	Weak transcription	Stomach Smooth Muscle	stomach
3	chr13:86234000-86235800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr13:86234200-86237600	Weak transcription	Fetal Lung	lung
5	chr13:86234400-86236000	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr13:86234600-86235200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr13:86234600-86237200	Enhancers	Colon Smooth Muscle	Colon
8	chr13:86234800-86235200	Active TSS	Fetal Heart	heart
9	chr13:86235200-86235400	Weak transcription	Fetal Heart	heart
10	chr13:86235200-86239000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr13:86235400-86238400	Enhancers	Fetal Heart	heart
12	chr13:86235600-86235800	Enhancers	Stomach Smooth Muscle	stomach
13	chr13:86235600-86236400	Enhancers	Rectal Smooth Muscle	rectum
14	chr13:86235800-86236400	Weak transcription	Stomach Smooth Muscle	stomach
15	chr13:86235800-86237400	Enhancers	Breast Myoepithelial Primary Cells	Breast
16	chr13:86235800-86239400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
17	chr13:86236000-86236200	Enhancers	Placenta Amnion	Placenta Amnion
18	chr13:86236000-86237200	Enhancers	Fetal Muscle Leg	muscle
19	chr13:86236200-86238600	Weak transcription	Placenta Amnion	Placenta Amnion
20	chr13:86236400-86236800	Weak transcription	Rectal Smooth Muscle	rectum
21	chr13:86236400-86237200	Enhancers	Stomach Smooth Muscle	stomach
22	chr13:86236800-86237200	Enhancers	Rectal Smooth Muscle	rectum
23	chr13:86237600-86237800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
24	chr13:86237600-86238200	Enhancers	Fetal Lung	lung
25	chr13:86237800-86239200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
26	chr13:86238000-86240600	Enhancers	ES-I3 Cell Line	embryonic stem cell
27	chr13:86238200-86238800	Weak transcription	Fetal Lung	lung
28	chr13:86238600-86239200	Enhancers	Placenta Amnion	Placenta Amnion
29	chr13:86238800-86239000	Enhancers	Fetal Lung	lung
30	chr13:86239000-86239400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr13:86239000-86239800	Enhancers	A549	lung
32	chr13:86239200-86239600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr13:86239200-86239600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
34	chr13:86239200-86239600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
35	chr13:86239200-86240200	Weak transcription	Placenta Amnion	Placenta Amnion
36	chr13:86239200-86240600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
37	chr13:86239200-86240800	Enhancers	iPS-18 Cell Line	embryonic stem cell
38	chr13:86239400-86239800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
39	chr13:86239400-86239800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr13:86239400-86239800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
41	chr13:86239400-86240400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
42	chr13:86239400-86240600	Enhancers	HUES64 Cell Line	embryonic stem cell
43	chr13:86239400-86240600	Enhancers	iPS-15b Cell Line	embryonic stem cell
44	chr13:86239400-86240800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
45	chr13:86240200-86240800	Enhancers	Placenta Amnion	Placenta Amnion
46	chr13:86240400-86240600	Genic enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
47	chr13:86240600-86240800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
48	chr13:86240600-86241000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
49	chr13:86240600-86241200	Active TSS	ES-I3 Cell Line	embryonic stem cell
50	chr13:86240600-86241600	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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