Variant report

Variant	nsv832939
Chromosome Location	chr15:26386767-26477263
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:5)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:5 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:26402833..26405131-chr15:26405696..26408604,2	K562	blood:
2	chr15:26424905..26425732-chr15:26597609..26598273,2	MCF-7	breast:
3	chr15:26402833..26405131-chr15:26405696..26408604,2	K562	blood:
4	chr15:26424865..26426106-chr15:26505413..26506276,3	MCF-7	breast:
5	chr15:26425024..26425727-chr15:27109497..27110414,4	MCF-7	breast:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ATP10A-2	chr15:26388041-26388084	NONHSAT041178

No data

Extended variants
information (count: 3040 )
Associated
traits (count: 110 )

Variant overlapped rSNPs/rCNVs (count:3040 , 50 per page) page: 1 2 3 4 5 6 7 ... 61

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs558003540	chr15:26389025-26389026	Enhancers	n/a	n/a	Overlapped CNVs	n/a
2	rs151271164	chr15:26389058-26389059	Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs538679424	chr15:26389064-26389065	Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs529796024	chr15:26389071-26389072	Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs17736602	chr15:26389095-26389096	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
6	rs543563246	chr15:26389118-26389119	Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs569877747	chr15:26389120-26389121	Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs184598143	chr15:26389141-26389142	Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs77767225	chr15:26389146-26389147	Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs565898926	chr15:26389161-26389162	Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs533651691	chr15:26391227-26391228	Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs546921385	chr15:26391228-26391229	Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs566687428	chr15:26391256-26391257	Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs535672822	chr15:26391261-26391262	Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs186621943	chr15:26391268-26391269	Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs567823894	chr15:26391346-26391347	Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs536786107	chr15:26391379-26391380	Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs9635422	chr15:26391410-26391411	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
19	rs117639329	chr15:26391416-26391417	Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs536943415	chr15:26391418-26391419	Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs58524267	chr15:26391434-26391435	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
22	rs56276164	chr15:26391451-26391452	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
23	rs56737683	chr15:26391512-26391513	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
24	rs141217204	chr15:26391529-26391530	Enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs562126010	chr15:26391544-26391545	Enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs150447481	chr15:26391565-26391566	Enhancers	n/a	n/a	Overlapped CNVs	n/a
27	rs188961029	chr15:26391586-26391587	Enhancers	n/a	n/a	Overlapped CNVs	n/a
28	rs564487986	chr15:26391603-26391604	Enhancers	n/a	n/a	Overlapped CNVs	n/a
29	rs533186498	chr15:26391606-26391607	Enhancers	n/a	n/a	Overlapped CNVs	n/a
30	rs546860020	chr15:26391627-26391628	Enhancers	n/a	n/a	Overlapped CNVs	n/a
31	rs560416483	chr15:26391645-26391646	Enhancers	n/a	n/a	Overlapped CNVs	n/a
32	rs542772136	chr15:26391649-26391650	Enhancers	n/a	n/a	Overlapped CNVs	n/a
33	rs374915050	chr15:26391654-26391655	Enhancers	n/a	n/a	Overlapped CNVs	n/a
34	rs529406476	chr15:26391697-26391698	Enhancers	n/a	n/a	Overlapped CNVs	n/a
35	rs554313737	chr15:26391707-26391708	Enhancers	n/a	n/a	Overlapped CNVs	n/a
36	rs199844474	chr15:26391708-26391709	Enhancers	n/a	n/a	Overlapped CNVs	n/a
37	rs549156726	chr15:26391709-26391710	Enhancers	n/a	n/a	Overlapped CNVs	n/a
38	rs569397459	chr15:26391757-26391758	Enhancers	n/a	n/a	Overlapped CNVs	n/a
39	rs562627687	chr15:26391790-26391791	Enhancers	n/a	n/a	Overlapped CNVs	n/a
40	rs57210586	chr15:26391791-26391792	Enhancers	n/a	n/a	Overlapped CNVs	n/a
41	rs397944359	chr15:26391802-26391803	Enhancers	n/a	n/a	Overlapped CNVs	n/a
42	rs201364882	chr15:26391804-26391805	Enhancers	n/a	n/a	Overlapped CNVs	n/a
43	rs537128094	chr15:26391817-26391818	Enhancers	n/a	n/a	Overlapped CNVs	n/a
44	rs550438920	chr15:26391840-26391841	Enhancers	n/a	n/a	Overlapped CNVs	n/a
45	rs570395335	chr15:26391950-26391951	Enhancers	n/a	n/a	Overlapped CNVs	n/a
46	rs539463276	chr15:26392006-26392007	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs138278355	chr15:26392134-26392135	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs573187417	chr15:26392140-26392141	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs28649998	chr15:26392193-26392194	Enhancers Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
50	rs555575730	chr15:26392204-26392205	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:110)

Disease	PMID	Source
Ovarian cancer	21720365	CNVD
HDAC8	0	CNVD
NIPBL	0	CNVD
RAD21	0	CNVD
SMC1A	0	CNVD
SMC3	0	CNVD
Ewing''s sarcoma	21437220	CNVD
Schizophrenia	19415332	CNVD
Breast cancer	22522925	CNVD
idiopathic generalized epilepsy	19843651	CNVD
Autism	22495311	CNVD
Wilms tumour	21544195	CNVD
abnormal development	18461090	CNVD
Prader-willi syndrome	21504564	CNVD
The inv dup or idic syndrome	19019226	CNVD
Prader-willi syndrome	21233802	CNVD
Angelman syndrome	16617304	CNVD
Angelman syndrome	20970697	CNVD
Autism	22958593	CNVD
Prader-willi syndrome	16617304	CNVD
Prader-willi syndrome	18923514	CNVD
Prader-willi syndrome	20970697	CNVD
Angelman syndrome	16183798	CNVD
Angelman syndrome	18923514	CNVD
Prader-willi syndrome	22241247	CNVD
Epilepsy	20970697	CNVD
Autism	20970697	CNVD
Autism	19935738	CNVD
Autism	22930557	CNVD
Autism	19966786	CNVD
Autism	18923514	CNVD
Autism	18925931	CNVD
Autism	18835857	CNVD
Prader-willi syndrome	18835857	CNVD
Prader-willi syndrome	22152151	CNVD
Autism	22241247	CNVD
15q-syndrome	21725066	CNVD
Prader-willi syndrome	21503198	CNVD
Autism	21956041	CNVD
Prader-willi syndrome	16760730	CNVD
Prader-willi syndrome	22470819	CNVD
prenatal diagnosis	20453657	CNVD
Prader-willi syndrome	17867985	CNVD
Angelman syndrome	21072004	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Testicular germ cell tumor	18059402	CNVD
cataract	16735990	CNVD
Cancer	21637783	CNVD
Colorectal cancer	20709793	CNVD
Medulloblastoma	21979893	CNVD
spastic paraplegia with thinning of corpus callosum	19105190	CNVD
Schizophrenia	21324950	CNVD
Astrocytoma	17387387	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Disease	21824424	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Prader-willi syndrome	18781185	CNVD
Melanoma	18172304	CNVD
Angelman syndrome	21824424	CNVD
Prader-willi syndrome	21824424	CNVD
Autism	18522746	CNVD
Autism	17322880	CNVD
Prader-willi syndrome	19329560	CNVD
Autism	17999366	CNVD
Autism	17901113	CNVD
Neurodevelopmental disorder	17015230	CNVD
Autism	18414403	CNVD
Neurocytoma	17123091	CNVD
Mental retardation	18923513	CNVD
Colorectal cancer	16774939	CNVD
Gastric cancer	17167181	CNVD
Neuroblastoma	19435921	CNVD
Colorectal cancer	19359472	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Multiple myeloma	17077331	CNVD
Colorectal cancer	16272173	CNVD
Gastrointestinal stromal cancer	20470368	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Multiple myeloma	17550852	CNVD
Gastrointestinal stromal cancer	20818650	CNVD
Intellectual disability	22102821	CNVD
Hodgkin''s lymphoma	17606441	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Breast cancer	21509527	CNVD
Schizophrenia	23813976	CNVD
Acute myeloid leukemia	20729466	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Breast cancer	17133270	CNVD
Prostate cancer	16573809	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Multiple myeloma	20724749	CNVD
Schizophrenia	19197363	CNVD
Lung cancer	18438408	CNVD
Breast cancer	21858162	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Intellectual disability	22045946	CNVD
Breast cancer	21785460	CNVD
Prostate cancer	18632612	CNVD
head and neck squamous cell carcinoma	17671120	CNVD
Central neurocytomas	17123091	CNVD
Angelman syndrome	18787571	CNVD
Non-syndromic sensorineural hearing loss	15273396	CNVD
Abnormal corpus callosum	21572526	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
small cell lung cancer	20016488	CNVD
Ovarian cancer	22355333	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD

Chromatin state (count:260 , 50 per page) page: 1 2 3 4 5 6

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:26389000-26389200	Enhancers	Brain Anterior Caudate	brain
2	chr15:26391200-26391800	Enhancers	Fetal Brain Male	brain
3	chr15:26391200-26392600	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr15:26391200-26393200	Enhancers	Brain Germinal Matrix	brain
5	chr15:26391400-26392000	Enhancers	Brain Anterior Caudate	brain
6	chr15:26391400-26392200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr15:26391400-26392600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr15:26391600-26392000	Enhancers	Fetal Brain Female	brain
9	chr15:26392000-26393400	Weak transcription	Brain Anterior Caudate	brain
10	chr15:26393200-26400600	Weak transcription	Brain Germinal Matrix	brain
11	chr15:26393400-26393600	Enhancers	Brain Anterior Caudate	brain
12	chr15:26393400-26394000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr15:26393400-26394000	Enhancers	Placenta Amnion	Placenta Amnion
14	chr15:26393600-26395200	Weak transcription	Brain Anterior Caudate	brain
15	chr15:26395800-26396200	Enhancers	iPS-18 Cell Line	embryonic stem cell
16	chr15:26400400-26401000	Weak transcription	Brain Anterior Caudate	brain
17	chr15:26400600-26402000	Enhancers	Brain Germinal Matrix	brain
18	chr15:26401000-26401600	Enhancers	Brain Anterior Caudate	brain
19	chr15:26401200-26404000	Enhancers	Cortex derived primary cultured neurospheres	brain
20	chr15:26401400-26401800	Enhancers	Stomach Smooth Muscle	stomach
21	chr15:26401400-26402400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr15:26401600-26402400	Weak transcription	Brain Anterior Caudate	brain
23	chr15:26401600-26402800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr15:26401600-26403000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr15:26401800-26402000	Flanking Active TSS	Stomach Smooth Muscle	stomach
26	chr15:26401800-26402600	Enhancers	Brain Angular Gyrus	brain
27	chr15:26401800-26403600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
28	chr15:26402000-26402200	Enhancers	Brain Cingulate Gyrus	brain
29	chr15:26402000-26402400	Flanking Active TSS	Brain Germinal Matrix	brain
30	chr15:26402000-26402400	Active TSS	Stomach Smooth Muscle	stomach
31	chr15:26402200-26402600	Enhancers	Liver	Liver
32	chr15:26402200-26402800	Active TSS	Pancreatic Islets	Pancreatic Islet
33	chr15:26402200-26403000	Enhancers	Fetal Brain Female	brain
34	chr15:26402400-26402800	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
35	chr15:26402400-26402800	Enhancers	Brain Inferior Temporal Lobe	brain
36	chr15:26402400-26403000	Flanking Active TSS	Stomach Smooth Muscle	stomach
37	chr15:26402400-26403400	Enhancers	Brain Anterior Caudate	brain
38	chr15:26402400-26403400	Enhancers	Colon Smooth Muscle	Colon
39	chr15:26402400-26404000	Enhancers	Brain Germinal Matrix	brain
40	chr15:26402600-26403200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
41	chr15:26402600-26403200	Enhancers	Pancreas	Pancrea
42	chr15:26402800-26403800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
43	chr15:26403000-26403200	Enhancers	Stomach Smooth Muscle	stomach
44	chr15:26403200-26406600	Weak transcription	Pancreas	Pancrea
45	chr15:26403400-26404000	Weak transcription	Brain Anterior Caudate	brain
46	chr15:26404000-26404200	Enhancers	Brain Anterior Caudate	brain
47	chr15:26405200-26406600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
48	chr15:26406600-26406800	ZNF genes & repeats	Aorta	Aorta
49	chr15:26406600-26407000	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
50	chr15:26406600-26407000	ZNF genes & repeats	Pancreas	Pancrea

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