Variant report

Variant	nsv833083
Chromosome Location	chr15:87298626-87468697
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:35)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:35 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:87411896..87413673-chr15:87415953..87418421,2	MCF-7	breast:
2	chr15:87458807..87459628-chr15:88502158..88502983,2	MCF-7	breast:
3	chr15:87341242..87343281-chr15:87344926..87347141,2	K562	blood:
4	chr15:87399134..87399678-chr15:87407572..87408255,2	MCF-7	breast:
5	chr15:87299754..87300537-chr5:74333585..74334466,2	MCF-7	breast:
6	chr15:87459185..87461823-chr15:88019854..88022278,2	MCF-7	breast:
7	chr15:87399134..87399678-chr15:87407572..87408255,2	MCF-7	breast:
8	chr15:87438465..87440643-chr15:87443131..87445996,2	MCF-7	breast:
9	chr15:86775206..86776046-chr15:87299657..87300527,2	MCF-7	breast:
10	chr15:87312652..87315552-chrX:140725008..140727739,2	MCF-7	breast:
11	chr15:87459171..87459700-chr15:88787052..88787930,2	MCF-7	breast:
12	chr15:87452666..87455145-chr15:87458740..87460262,2	K562	blood:
13	chr15:87167915..87168430-chr15:87299358..87300183,2	MCF-7	breast:
14	chr15:87407387..87407922-chr15:87424868..87425466,2	MCF-7	breast:
15	chr15:87411896..87413673-chr15:87415953..87418421,2	MCF-7	breast:
16	chr15:87438465..87440643-chr15:87443131..87445996,2	MCF-7	breast:
17	chr15:87377017..87379430-chr15:87379438..87381576,2	MCF-7	breast:
18	chr15:87377017..87379430-chr15:87379438..87381576,2	MCF-7	breast:
19	chr15:87406950..87407887-chr15:87434556..87435083,2	MCF-7	breast:
20	chr15:87458782..87459709-chr15:88787454..88788311,2	K562	blood:
21	chr15:87341242..87343281-chr15:87344926..87347141,2	K562	blood:
22	chr15:87407387..87407922-chr15:87424868..87425466,2	MCF-7	breast:
23	chr15:87451474..87454428-chr15:87455862..87457463,2	MCF-7	breast:
24	chr15:87451474..87454428-chr15:87455862..87457463,2	MCF-7	breast:
25	chr15:87458779..87459380-chr15:88147937..88148729,2	MCF-7	breast:
26	chr15:87452666..87455145-chr15:87458740..87460262,2	K562	blood:
27	chr15:87417928..87418618-chr21:47573271..47573823,2	MCF-7	breast:
28	chr15:87286720..87287220-chr15:87446694..87447539,2	MCF-7	breast:
29	chr15:87455909..87457424-chr15:87457652..87460644,2	MCF-7	breast:
30	chr15:87406950..87407887-chr15:87434556..87435083,2	MCF-7	breast:
31	chr15:87455909..87457424-chr15:87457652..87460644,2	MCF-7	breast:
32	chr15:87286481..87287379-chr15:87420421..87421216,2	MCF-7	breast:
33	chr15:87384347..87386919-chr15:87389660..87391797,2	MCF-7	breast:
34	chr15:87443577..87445458-chr20:53034943..53037024,2	MCF-7	breast:
35	chr15:87384347..87386919-chr15:87389660..87391797,2	MCF-7	breast:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-AKAP13-6	chr15:87457674-87459386	NONHSAT048138

No data

Extended variants
information (count: 5436 )
Associated
traits (count: 62 )

Variant overlapped rSNPs/rCNVs (count:5436 , 50 per page) page: 1 2 3 4 5 6 7 ... 109

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs555857839	chr15:87298681-87298682	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs139428353	chr15:87298719-87298720	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs540991784	chr15:87298720-87298721	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs557711133	chr15:87298725-87298726	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs559326159	chr15:87298731-87298732	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs530644345	chr15:87298751-87298752	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs184162183	chr15:87298760-87298761	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs189375359	chr15:87298789-87298790	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs34053914	chr15:87298832-87298833	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs144135018	chr15:87298834-87298835	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs78092730	chr15:87298858-87298859	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs549335120	chr15:87298859-87298860	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs146424340	chr15:87298860-87298861	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs372864690	chr15:87298866-87298867	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs149022347	chr15:87298873-87298874	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs181023356	chr15:87298877-87298878	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs142056010	chr15:87298912-87298913	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs78052161	chr15:87298920-87298921	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs551686264	chr15:87298934-87298935	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs569727871	chr15:87298935-87298936	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs537220471	chr15:87298937-87298938	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs555157720	chr15:87298962-87298963	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs78981623	chr15:87298990-87298991	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs534838363	chr15:87299054-87299055	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs552939512	chr15:87299059-87299060	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs577651232	chr15:87299092-87299093	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs566772815	chr15:87299108-87299109	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs571560707	chr15:87299154-87299155	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs563981659	chr15:87299161-87299162	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs111392553	chr15:87299198-87299199	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs11073666	chr15:87299209-87299210	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
32	rs200238295	chr15:87299236-87299237	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
33	rs140171494	chr15:87299243-87299244	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
34	rs11073667	chr15:87299277-87299278	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
35	rs150253682	chr15:87299360-87299361	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
36	rs139208155	chr15:87299362-87299363	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
37	rs569550787	chr15:87299372-87299373	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
38	rs141879564	chr15:87299392-87299393	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
39	rs569898159	chr15:87299393-87299394	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
40	rs185659435	chr15:87299394-87299395	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
41	rs74025457	chr15:87299399-87299400	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
42	rs567164795	chr15:87299404-87299405	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
43	rs573427859	chr15:87299414-87299415	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
44	rs534779022	chr15:87299430-87299431	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
45	rs540778344	chr15:87299449-87299450	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
46	rs10852079	chr15:87299450-87299451	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
47	rs571674385	chr15:87299451-87299452	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
48	rs577585692	chr15:87299458-87299459	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
49	rs12899177	chr15:87299464-87299465	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
50	rs189649317	chr15:87299467-87299468	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:62)

Disease	PMID	Source
Ewing''s sarcoma	21437220	CNVD
Schizophrenia	19415332	CNVD
Breast cancer	22522925	CNVD
Wilms tumour	21544195	CNVD
cataract	16735990	CNVD
Cancer	21637783	CNVD
Colorectal cancer	20709793	CNVD
Medulloblastoma	21979893	CNVD
spastic paraplegia with thinning of corpus callosum	19105190	CNVD
Schizophrenia	21324950	CNVD
Astrocytoma	17387387	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Disease	21824424	CNVD
Melanoma	18172304	CNVD
Gastric cancer	17167181	CNVD
Neuroblastoma	19435921	CNVD
Colorectal cancer	19359472	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Multiple myeloma	17077331	CNVD
Colorectal cancer	16272173	CNVD
Gastrointestinal stromal cancer	20470368	CNVD
Multiple myeloma	17550852	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute myeloid leukemia	20729466	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Multiple myeloma	20724749	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Prostate cancer	18632612	CNVD
Basal cell lymphoma	17170743	CNVD
Follicular lymphoma	17170743	CNVD
Cancer	16751803	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Autism	17322880	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Lung cancer	18438408	CNVD
Acute myeloid leukemia	16864856	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
small cell lung cancer	20016488	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Colorectal cancer	16774939	CNVD
Myofibroblastic sarcoma	19369631	CNVD
Embryonal rhabdomyosarcoma	16790082	CNVD
Esophageal adenocarcinoma	18820669	CNVD
Sudden cardiac death	19188705	CNVD
abnormal development	18461090	CNVD
Intellectual disability	22102821	CNVD
Breast cancer	17133270	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Non-muscle invasive bladder neoplasm	19445696	CNVD
Breast cancer	21364760	CNVD
Cancer	21129771	CNVD
Myelofibrosis	22110671	CNVD
Spondylocostal dysostosis	21085971	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
Epilepsy	19486360	CNVD
Breast cancer	21509527	CNVD
Non-syndromic sensorineural hearing loss	18451855	CNVD
Acute myeloid leukemia	17237825	CNVD
Pancreatic cancer	17952125	CNVD

Chromatin state (count:543 , 50 per page) page: 1 2 3 4 5 6 7 ... 11

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:87294200-87302000	Weak transcription	Skeletal Muscle Female	skeletal muscle
2	chr15:87298600-87303600	Weak transcription	Fetal Lung	lung
3	chr15:87299200-87299800	Enhancers	Fetal Muscle Leg	muscle
4	chr15:87299800-87300600	Enhancers	Psoas Muscle	Psoas
5	chr15:87300600-87303400	Weak transcription	Psoas Muscle	Psoas
6	chr15:87302000-87303200	Enhancers	Skeletal Muscle Female	skeletal muscle
7	chr15:87302400-87303400	Enhancers	Fetal Heart	heart
8	chr15:87302600-87303800	Enhancers	Skeletal Muscle Male	skeletal muscle
9	chr15:87303200-87303600	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
10	chr15:87303400-87304000	Enhancers	Psoas Muscle	Psoas
11	chr15:87303400-87304200	Flanking Active TSS	Fetal Heart	heart
12	chr15:87303600-87304200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
13	chr15:87303600-87304200	Enhancers	Fetal Lung	lung
14	chr15:87303600-87304400	Enhancers	Skeletal Muscle Female	skeletal muscle
15	chr15:87304000-87314000	Weak transcription	Psoas Muscle	Psoas
16	chr15:87304200-87304600	Enhancers	Fetal Heart	heart
17	chr15:87304600-87307400	Weak transcription	Fetal Heart	heart
18	chr15:87307400-87307800	Enhancers	Fetal Heart	heart
19	chr15:87307400-87307800	Enhancers	Fetal Kidney	kidney
20	chr15:87307800-87308200	Weak transcription	Fetal Kidney	kidney
21	chr15:87307800-87314000	Weak transcription	Fetal Heart	heart
22	chr15:87308200-87308400	Enhancers	Fetal Kidney	kidney
23	chr15:87308400-87316000	Weak transcription	Fetal Kidney	kidney
24	chr15:87311400-87312000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr15:87311400-87312000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr15:87312000-87315400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr15:87314000-87314200	Enhancers	Psoas Muscle	Psoas
28	chr15:87314000-87314400	Enhancers	Fetal Heart	heart
29	chr15:87314000-87314400	Enhancers	Left Ventricle	heart
30	chr15:87314000-87319800	Enhancers	Duodenum Mucosa	Duodenum
31	chr15:87314000-87320000	Enhancers	Fetal Intestine Large	intestine
32	chr15:87314400-87315600	Weak transcription	Fetal Heart	heart
33	chr15:87314600-87319400	Enhancers	Fetal Intestine Small	intestine
34	chr15:87315000-87315600	Enhancers	Small Intestine	intestine
35	chr15:87315000-87315800	Enhancers	Sigmoid Colon	Sigmoid Colon
36	chr15:87315400-87316200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
37	chr15:87315400-87316200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
38	chr15:87315400-87316400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
39	chr15:87315600-87316400	Weak transcription	Small Intestine	intestine
40	chr15:87315800-87316200	Enhancers	Adipose Nuclei	Adipose
41	chr15:87315800-87316200	Weak transcription	Sigmoid Colon	Sigmoid Colon
42	chr15:87315800-87316400	Enhancers	Liver	Liver
43	chr15:87315800-87316600	Enhancers	Fetal Lung	lung
44	chr15:87316000-87316200	Enhancers	Fetal Heart	heart
45	chr15:87316000-87316400	Enhancers	Fetal Kidney	kidney
46	chr15:87316200-87316600	Enhancers	Sigmoid Colon	Sigmoid Colon
47	chr15:87316400-87317000	Enhancers	Small Intestine	intestine
48	chr15:87318400-87318600	Enhancers	Fetal Lung	lung
49	chr15:87319200-87319400	Enhancers	Small Intestine	intestine
50	chr15:87326400-87326800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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