Variant report

Variant	nsv834483
Chromosome Location	chr2:185082753-185227428
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:26)
LncRNA
region (count:3)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:26 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr2:185066479..185068495-chr2:185209496..185211402,2	K562	blood:
2	chr2:185128748..185131745-chr2:185134110..185138355,3	K562	blood:
3	chr2:185086289..185087889-chr2:185091229..185094182,2	K562	blood:
4	chr15:41186270..41188900-chr2:185100150..185103068,2	K562	blood:
5	chr2:185169023..185171389-chr2:185175264..185178248,2	K562	blood:
6	chr2:185020880..185023021-chr2:185080890..185083971,3	K562	blood:
7	chr2:185068138..185070964-chr2:185088334..185090815,2	K562	blood:
8	chr2:185069331..185071140-chr2:185086941..185089740,2	K562	blood:
9	chr2:185103488..185105465-chr2:185244326..185245928,2	K562	blood:
10	chr2:185223918..185225918-chr2:185227977..185230621,2	K562	blood:
11	chr2:185160917..185163331-chr2:185190953..185193318,2	K562	blood:
12	chr2:185201237..185203817-chr2:185332460..185335138,2	K562	blood:
13	chr2:185052728..185055643-chr2:185086397..185088845,2	K562	blood:
14	chr2:185169023..185171389-chr2:185175264..185178248,2	K562	blood:
15	chr2:185226895..185229045-chr2:185330186..185332070,2	K562	blood:
16	chr2:185208077..185209998-chr2:185211977..185213608,2	K562	blood:
17	chr2:185115001..185116702-chr2:185121013..185123546,2	K562	blood:
18	chr2:185204369..185206130-chr2:185218623..185221505,2	K562	blood:
19	chr2:185204369..185206130-chr2:185218623..185221505,2	K562	blood:
20	chr2:185128748..185131745-chr2:185134110..185138355,3	K562	blood:
21	chr2:185115001..185116702-chr2:185121013..185123546,2	K562	blood:
22	chr2:185086289..185087889-chr2:185091229..185094182,2	K562	blood:
23	chr2:185160917..185163331-chr2:185190953..185193318,2	K562	blood:
24	chr16:57227705..57228253-chr2:185151504..185152004,2	NB4	blood:
25	chr2:127533916..127534758-chr2:185187632..185188334,2	MCF-7	breast:
26	chr2:185208077..185209998-chr2:185211977..185213608,2	K562	blood:

(count:3 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-NCKAP1-4	chr2:185169187-185169348	l_2003_chr2:185169076-185171314_76bGuttman_hLF
2	lnc-NCKAP1-4	chr2:185169077-185169159	l_2003_chr2:185169076-185171314_76bGuttman_hLF
3	lnc-NCKAP1-4	chr2:185171240-185171314	l_2003_chr2:185169076-185171314_76bGuttman_hLF

No data

Variant related genes	Relation type
ENSG00000104142	chromatin interactions

Extended variants
information (count: 1511 )
Associated
traits (count: 61 )

Variant overlapped rSNPs/rCNVs (count:1511 , 50 per page) page: 1 2 3 4 5 6 7 ... 31

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs572958915	chr2:185100002-185100003	Enhancers	n/a	n/a	Overlapped CNVs	n/a
2	rs376627292	chr2:185100025-185100026	Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs540471130	chr2:185100032-185100033	Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs34960422	chr2:185100064-185100065	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
5	rs75333477	chr2:185100076-185100077	Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs74609134	chr2:185100089-185100090	Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs184281042	chr2:185100094-185100095	Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs540797853	chr2:185100119-185100120	Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs563128790	chr2:185100122-185100123	Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs189380330	chr2:185100144-185100145	Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs75792683	chr2:185100161-185100162	Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
12	rs139086694	chr2:185100186-185100187	Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
13	rs368057994	chr2:185100245-185100246	Active TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
14	rs371865556	chr2:185100276-185100277	Active TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
15	rs527876935	chr2:185100302-185100303	Active TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
16	rs181790194	chr2:185100313-185100314	Active TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
17	rs148355510	chr2:185100338-185100339	Active TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
18	rs377098269	chr2:185100372-185100373	Active TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
19	rs567234963	chr2:185100385-185100386	Active TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
20	rs143965608	chr2:185100392-185100393	Active TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
21	rs146455427	chr2:185100438-185100439	Active TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
22	rs550565933	chr2:185100477-185100478	Active TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
23	rs369568145	chr2:185100479-185100480	Active TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
24	rs568870260	chr2:185100503-185100504	Active TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
25	rs7596901	chr2:185100535-185100536	Active TSS	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
26	rs557567702	chr2:185100545-185100546	Active TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
27	rs566592649	chr2:185100593-185100594	Active TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
28	rs533734630	chr2:185100602-185100603	Active TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
29	rs375800944	chr2:185100611-185100612	Active TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
30	rs140761093	chr2:185100616-185100617	Active TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
31	rs544105427	chr2:185100640-185100641	Active TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
32	rs556097473	chr2:185100642-185100643	Active TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
33	rs145556353	chr2:185100777-185100778	Active TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
34	rs545046830	chr2:185100842-185100843	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
35	rs560362375	chr2:185100873-185100874	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
36	rs527819025	chr2:185100890-185100891	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
37	rs184480110	chr2:185100980-185100981	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
38	rs561551121	chr2:185100986-185100987	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
39	rs531993930	chr2:185101000-185101001	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
40	rs6759052	chr2:185101095-185101096	Inactive region	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
41	rs572008391	chr2:185101113-185101114	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
42	rs78637924	chr2:185101152-185101153	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
43	rs571255318	chr2:185101160-185101161	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
44	rs371522280	chr2:185101165-185101166	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
45	rs148909966	chr2:185101180-185101181	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
46	rs116494182	chr2:185101196-185101197	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
47	rs370588915	chr2:185101277-185101278	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
48	rs533911381	chr2:185101286-185101287	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
49	rs548859356	chr2:185101304-185101305	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
50	rs72901145	chr2:185101311-185101312	Inactive region	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a

Variant related diseases (count:61)

Disease	PMID	Source
Breast cancer	17603634	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Ependymoma	16718352	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Intellectual disability	22102821	CNVD
Autism	18522746	CNVD
Melanoma	18172304	CNVD
Cancer	16751803	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Acute lymphoblastic leukemia	21980252	CNVD
Testicular germ cell tumor	18059402	CNVD
Breast cancer	16272173	CNVD
Ewing''s sarcoma	17952124	CNVD
Cancer	21637783	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Liposarcoma	21253554	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Embryonal rhabdomyosarcoma	16790082	CNVD
Autism	16446308	CNVD
Autism	19401682	CNVD
Colorectal cancer	16272173	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Lung cancer	18438408	CNVD
Glioblastoma	21080181	CNVD
Prostate cancer	18632612	CNVD
Acute myeloid leukemia	20729466	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
small cell lung cancer	20016488	CNVD
Facial dysmorphism	20548289	CNVD
Mental retardation	20548289	CNVD
Biliary cancer	20360734	CNVD
Breast cancer	20360734	CNVD
Coronary artery disease	20360734	CNVD
Crohn''s disease	20360734	CNVD
Hypertension	20360734	CNVD
Rheumatoid arthritis	20360734	CNVD
Type 1 diabetes	20360734	CNVD
Type 2 diabetes	20360734	CNVD
Breast cancer	21364760	CNVD
Myelofibrosis	22110671	CNVD
Hirschsprung''s Disease	21712996	CNVD
Cancer	21183584	CNVD
Sudden cardiac death	19188705	CNVD
Autism	19329560	CNVD
Autism	22543975	CNVD
Pancreatic ductal adenocarcinoma	19077451	CNVD
Schizophrenia	23813976	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD
Psychiatric disorder	20548289	CNVD
Psychosis	20048749	CNVD
Rectal cancer	20877625	CNVD
Schizophrenia	20548289	CNVD
anxiety disorder	20548289	CNVD
Autism	20548289	CNVD
Bipolar disorder	20548289	CNVD
Breast cancer	22522925	CNVD

Chromatin state (count:94 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:185100000-185100200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
2	chr2:185100200-185100800	Active TSS	ES-WA7 Cell Line	embryonic stem cell
3	chr2:185116200-185116600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr2:185116200-185117000	Enhancers	Adipose Nuclei	Adipose
5	chr2:185117000-185118800	Weak transcription	Adipose Nuclei	Adipose
6	chr2:185118800-185119000	Enhancers	Adipose Nuclei	Adipose
7	chr2:185121400-185121800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr2:185125000-185125600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr2:185125400-185127400	Enhancers	Liver	Liver
10	chr2:185125600-185127000	Enhancers	Adipose Nuclei	Adipose
11	chr2:185126000-185126800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr2:185126800-185128600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr2:185127000-185134200	Weak transcription	Adipose Nuclei	Adipose
14	chr2:185128600-185129200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr2:185129000-185129200	Enhancers	Liver	Liver
16	chr2:185129200-185134800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr2:185133800-185134200	Enhancers	Psoas Muscle	Psoas
18	chr2:185134200-185134600	Weak transcription	Psoas Muscle	Psoas
19	chr2:185134200-185136600	Enhancers	Adipose Nuclei	Adipose
20	chr2:185134600-185134800	Enhancers	Psoas Muscle	Psoas
21	chr2:185134600-185134800	Enhancers	Skeletal Muscle Female	skeletal muscle
22	chr2:185134800-185136200	Weak transcription	Psoas Muscle	Psoas
23	chr2:185134800-185137000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr2:185135400-185137400	Enhancers	K562	blood
25	chr2:185135600-185136000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr2:185135600-185136000	Enhancers	Fetal Kidney	kidney
27	chr2:185135600-185136200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr2:185136000-185137000	Weak transcription	Fetal Kidney	kidney
29	chr2:185136000-185137600	Enhancers	Fetal Heart	heart
30	chr2:185136200-185136800	Enhancers	Psoas Muscle	Psoas
31	chr2:185136600-185137000	Enhancers	Skeletal Muscle Female	skeletal muscle
32	chr2:185137000-185137200	Enhancers	Fetal Kidney	kidney
33	chr2:185167400-185169200	Enhancers	Muscle Satellite Cultured Cells	--
34	chr2:185167600-185168600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr2:185168600-185169400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr2:185169600-185169800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr2:185181000-185182200	Enhancers	Muscle Satellite Cultured Cells	--
38	chr2:185184400-185185000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr2:185185000-185188400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr2:185188400-185188600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr2:185188400-185189000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
42	chr2:185188400-185190800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
43	chr2:185188600-185189200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr2:185189200-185190400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr2:185189400-185189600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
46	chr2:185189600-185190000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
47	chr2:185189600-185190800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
48	chr2:185190400-185191000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
49	chr2:185190800-185191800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
50	chr2:185191000-185191200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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