Variant report

Variant	nsv8410
Chromosome Location	chr9:7334684-7338121
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-C9orf123-9	chr9:7334597-7335051	l_3732_chr9:7334596-7336064_thyroid
2	lnc-C9orf123-9	chr9:7335933-7336064	l_3732_chr9:7334596-7336064_thyroid
3	lnc-C9orf123-9	chr9:7335540-7335590	l_3732_chr9:7334596-7336064_thyroid

Extended variants
information (count: 189 )
Associated
traits (count: 99 )

Variant overlapped rSNPs/rCNVs (count:189 , 50 per page) page: 1 2 3 4

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs116664451	chr9:7334706-7334707	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
2	rs556267339	chr9:7334708-7334709	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
3	rs568066439	chr9:7334737-7334738	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
4	rs181406367	chr9:7334784-7334785	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
5	rs375056271	chr9:7334798-7334799	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
6	rs554212075	chr9:7334836-7334837	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
7	rs184799291	chr9:7334843-7334844	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
8	rs546111561	chr9:7334849-7334850	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
9	rs189269733	chr9:7334894-7334895	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
10	rs576199676	chr9:7334902-7334903	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
11	rs148189633	chr9:7334936-7334937	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
12	rs180726116	chr9:7334950-7334951	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
13	rs186310142	chr9:7334960-7334961	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
14	rs541412922	chr9:7335033-7335034	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
15	rs114321562	chr9:7335076-7335077	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs574367466	chr9:7335086-7335087	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs61046016	chr9:7335130-7335131	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs552154842	chr9:7335148-7335149	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs570682301	chr9:7335172-7335173	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs13294999	chr9:7335177-7335178	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs149708186	chr9:7335234-7335235	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs79726634	chr9:7335251-7335252	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs549912377	chr9:7335276-7335277	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs572940176	chr9:7335304-7335305	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs568155644	chr9:7335366-7335367	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs7038249	chr9:7335385-7335386	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
27	rs141219202	chr9:7335393-7335394	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs566279984	chr9:7335400-7335401	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs1926385	chr9:7335408-7335409	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
30	rs557980727	chr9:7335416-7335417	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs386732220	chr9:7335423-7335424	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs7022426	chr9:7335425-7335426	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs1926384	chr9:7335435-7335436	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
34	rs371760684	chr9:7335438-7335439	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs115404252	chr9:7335532-7335533	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs145319027	chr9:7335554-7335555	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
37	rs559710740	chr9:7335555-7335556	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
38	rs190719714	chr9:7335560-7335561	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
39	rs1926383	chr9:7335580-7335581	Weak transcription	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
40	rs10121245	chr9:7335586-7335587	Weak transcription	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
41	rs10976248	chr9:7335597-7335598	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
42	rs550001789	chr9:7335625-7335626	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs5896185	chr9:7335665-7335666	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs530652463	chr9:7335676-7335677	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs561796989	chr9:7335700-7335701	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs181865208	chr9:7335708-7335709	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs10124027	chr9:7335718-7335719	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs565671038	chr9:7335723-7335724	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs555807462	chr9:7335741-7335742	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs539020809	chr9:7335797-7335798	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:99)

Disease	PMID	Source
Chronic lymphocytic leukemia	21546498	CNVD
Intracranial aneurysm	16715129	CNVD
Primary mediastinal b-cell lymphoma	17728785	CNVD
Disorders of sex development	22290220	CNVD
Glioblastoma multiforme	21080181	CNVD
Sudden cardiac death	19188705	CNVD
Non-small cell lung cancer	21829676	CNVD
Acute myeloid leukemia	16864856	CNVD
Cancer	21183584	CNVD
Non-small cell lung cancer	21952639	CNVD
Disorders of sex development	21048976	CNVD
Neuroblastoma	18923191	CNVD
Intellectual disability	22102821	CNVD
abnormal development	18461090	CNVD
Honadal dysgenesis	21048976	CNVD
Medulloblastoma	21979893	CNVD
Lung cancer	16740712	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Basal cell lymphoma	17170743	CNVD
Follicular lymphoma	17170743	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Breast cancer	16608533	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Breast cancer	16272173	CNVD
Hepatocellular carcinoma	16750200	CNVD
Breast cancer	17133270	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Cervical cancer	21063398	CNVD
Retinoblastoma	22278416	CNVD
Splenic marginal zone lymphoma	18492102	CNVD
Melanoma	18172304	CNVD
Biliary cancer	19435499	CNVD
Gastric cancer	21586687	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Myopathy	18421352	CNVD
Neuroblastoma	18664255	CNVD
Acute lymphoblastic leukemia	18957548	CNVD
Myeloproliferative neoplasm	17564968	CNVD
Malignant meningioma	17937814	CNVD
Glioma	21971842	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Ewing''s sarcoma	21437220	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	17603634	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	17387387	CNVD
Hepatocellular carcinoma	22174799	CNVD
Oligodendroglial tumors	17285580	CNVD
Cutaneous squamous cell carcinomas	19131950	CNVD
Small bowel adenocarcinoma	21586687	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Chordoma	18071362	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Chordoma	21602918	CNVD
Renal cell carcinoma	18592004	CNVD
Developmental delay	19490664	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
microdeletion syndrome	16199537	CNVD
Non-syndromic sensorineural hearing loss	21987784	CNVD
Cancer	20164919	CNVD
Chronic myeloid leukemia	21384125	CNVD
Ovarian cancer	21720365	CNVD
Non-syndromic sensorineural hearing loss	21030649	CNVD
small cell lung cancer	20016488	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Developmental delay	21147756	CNVD
Lung cancer	18438408	CNVD
XY gonadal dysgenesis	20685758	CNVD
Urothelial carcinoma	21177765	CNVD
Oral cancer	21386901	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Myelodysplastic syndrome	21251322	CNVD
Breast cancer	21785460	CNVD
Esophageal adenocarcinoma	19417022	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	21858162	CNVD
Renal cell carcinoma	21668985	CNVD
Autism	22495311	CNVD
T-cell acute lymphoblastic leukemia	18185524	CNVD
Myelofibrosis	22110671	CNVD
Malignant fibrous histiocytomas	21085701	CNVD
Hepatocellular carcinoma	18803288	CNVD
Breast cancer	21364760	CNVD
Metastatic melanoma	18483359	CNVD
Glioblastoma	19074898	CNVD
Malignant melanoma	19074898	CNVD
Prostate cancer	16573809	CNVD
Metanephric adenoma	20802469	CNVD
Medulloblastoma	16783165	CNVD
Ovarian clear cell carcinoma	21343371	CNVD
Cancer	20164920	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:7328600-7342200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr9:7336400-7337400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr9:7336400-7337800	Enhancers	Placenta	Placenta
4	chr9:7336600-7337400	Enhancers	Fetal Lung	lung
5	chr9:7336800-7337400	Enhancers	Fetal Stomach	stomach
6	chr9:7336800-7337600	Enhancers	Fetal Brain Male	brain
7	chr9:7336800-7337800	Enhancers	Fetal Muscle Leg	muscle
8	chr9:7337000-7337400	Enhancers	Fetal Kidney	kidney
9	chr9:7337400-7338600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr9:7337400-7341800	Weak transcription	Fetal Lung	lung
11	chr9:7337400-7342200	Weak transcription	Fetal Kidney	kidney
12	chr9:7337400-7342600	Weak transcription	Fetal Stomach	stomach
13	chr9:7337600-7342400	Weak transcription	Fetal Brain Male	brain
14	chr9:7337800-7342200	Weak transcription	Fetal Muscle Leg	muscle
15	chr9:7337800-7342800	Weak transcription	Placenta	Placenta

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