Variant report

Variant	nsv8427
Chromosome Location	chr9:22668170-22671247
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 129 )
Associated
traits (count: 149 )

Variant overlapped rSNPs/rCNVs (count:129 , 50 per page) page: 1 2 3

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs148380096	chr9:22668178-22668179	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs563666941	chr9:22668185-22668186	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs576281035	chr9:22668251-22668252	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs576976122	chr9:22668260-22668261	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs141552344	chr9:22668267-22668268	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs180972389	chr9:22668287-22668288	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs564749537	chr9:22668299-22668300	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs541235632	chr9:22668315-22668316	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs544449661	chr9:22668316-22668317	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs200392907	chr9:22668341-22668342	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs540775098	chr9:22668347-22668348	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs150509934	chr9:22668363-22668364	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs529673407	chr9:22668366-22668367	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs549524634	chr9:22668377-22668378	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs569602477	chr9:22668508-22668509	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs187130280	chr9:22668610-22668611	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs139486455	chr9:22668633-22668634	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs552795931	chr9:22668634-22668635	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs115576273	chr9:22668659-22668660	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs535225674	chr9:22668678-22668679	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs192414418	chr9:22668705-22668706	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs75290736	chr9:22668709-22668710	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs370268455	chr9:22668720-22668721	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs374003687	chr9:22668756-22668757	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs559848214	chr9:22668786-22668787	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs548889429	chr9:22668813-22668814	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs376464613	chr9:22668848-22668849	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs557081779	chr9:22668907-22668908	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs181710129	chr9:22668915-22668916	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs552526480	chr9:22668920-22668921	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs545017346	chr9:22668932-22668933	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs570721149	chr9:22668933-22668934	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs571939394	chr9:22668945-22668946	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs537969318	chr9:22668955-22668956	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs540809821	chr9:22668965-22668966	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs143420834	chr9:22668982-22668983	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs12551699	chr9:22668988-22668989	ZNF genes & repeats Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
38	rs529771142	chr9:22668989-22668990	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs543455637	chr9:22668994-22668995	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs563147352	chr9:22669032-22669033	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs375262558	chr9:22669064-22669065	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs532124130	chr9:22669087-22669088	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs374682154	chr9:22669098-22669099	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs142693573	chr9:22669111-22669112	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs2210865	chr9:22669166-22669167	ZNF genes & repeats Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
46	rs570969317	chr9:22669197-22669198	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs147387951	chr9:22669244-22669245	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs112494606	chr9:22669251-22669252	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs573395072	chr9:22669252-22669253	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs537161913	chr9:22669366-22669367	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:149)

Disease	PMID	Source
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Breast cancer	16608533	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Breast cancer	16272173	CNVD
Hepatocellular carcinoma	16750200	CNVD
Breast cancer	17133270	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Cervical cancer	21063398	CNVD
Retinoblastoma	22278416	CNVD
Splenic marginal zone lymphoma	18492102	CNVD
Melanoma	18172304	CNVD
Biliary cancer	19435499	CNVD
Gastric cancer	21586687	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Myopathy	18421352	CNVD
Neuroblastoma	18664255	CNVD
Acute lymphoblastic leukemia	18957548	CNVD
Myeloproliferative neoplasm	17564968	CNVD
Malignant meningioma	17937814	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Glioma	21971842	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Ewing''s sarcoma	21437220	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	17603634	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	17387387	CNVD
Hepatocellular carcinoma	22174799	CNVD
Oligodendroglial tumors	17285580	CNVD
Cutaneous squamous cell carcinomas	19131950	CNVD
Small bowel adenocarcinoma	21586687	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Chordoma	18071362	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Chordoma	21602918	CNVD
Renal cell carcinoma	18592004	CNVD
Developmental delay	19490664	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
microdeletion syndrome	16199537	CNVD
Non-syndromic sensorineural hearing loss	21987784	CNVD
Cancer	20164919	CNVD
Ovarian cancer	21720365	CNVD
Non-syndromic sensorineural hearing loss	21030649	CNVD
small cell lung cancer	20016488	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Lung cancer	18438408	CNVD
Urothelial carcinoma	21177765	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Chronic myeloid leukemia	21384125	CNVD
Breast cancer	21785460	CNVD
Esophageal adenocarcinoma	19417022	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Renal cell carcinoma	21668985	CNVD
Myelodysplastic syndrome	21251322	CNVD
Autism	22495311	CNVD
Hepatocellular carcinoma	18803288	CNVD
Metanephric adenoma	20802469	CNVD
Developmental delay	21147756	CNVD
Pilocytic astrocytoma	18670637	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Melanoma	22183965	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Non-small cell lung cancer	19010865	CNVD
Myoepithelioma	18604193	CNVD
Cancer	22183965	CNVD
Glioblastoma multiforme	21569311	CNVD
Myelofibrosis	22110671	CNVD
Ewing''s sarcoma	22429812	CNVD
Neuroblastoma	21899760	CNVD
Glioblastoma multiforme	19435819	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Cutaneous T-cell lymphoma	21881587	CNVD
Glioblastoma multiforme	22291905	CNVD
Lung cancer	21911935	CNVD
Primary central nervous system lymphoma	21088137	CNVD
head and neck squamous cell carcinoma	21798897	CNVD
Cancer	21253487	CNVD
Glioblastoma multiforme	22286061	CNVD
Intracranial ependymoma	16609018	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Glioblastoma multiforme	21922591	CNVD
Acute lymphoblastic leukemia	17443227	CNVD
Barrett''s adenocarcinoma	18663352	CNVD
T-cell acute lymphoblastic leukemia	19406988	CNVD
Urothelial cell carcinoma	18451213	CNVD
Glioma	17123091	CNVD
Mental retardation	17124404	CNVD
Acute lymphoblastic leukemia	19100363	CNVD
Acute lymphoblastic leukemia	18768390	CNVD
Leukemia	19602459	CNVD
Acute monocytic leukemia	16498392	CNVD
Esophageal squamous carcinoma	18405350	CNVD
Malignant mesothelioma	18160781	CNVD
Pleural malignant mesothelioma	18160781	CNVD
Leukemia	18688285	CNVD
T-cell acute lymphoblastic leukemia	18185524	CNVD
Acute myeloid leukemia	19651601	CNVD
Coronary Disease	20032323	CNVD
Squamous cell cancer	20885788	CNVD
Hirschsprung''s Disease	21712996	CNVD
Cancer	21732550	CNVD
Gastric cancer	22539939	CNVD
Cancer	21183584	CNVD
T-cell lymphomas	19863542	CNVD
Diffuse large b-cell lymphoma	18287131	CNVD
Metastatic melanoma	18483359	CNVD
Non-small cell lung cancer	20864512	CNVD
Cervical cancer	21062161	CNVD
Acute myeloid leukemia	16864856	CNVD
Glioblastoma	17090523	CNVD
Lung cancer	16773561	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Colorectal cancer	16774939	CNVD
Bladder cancer	19088036	CNVD
Colorectal cancer	16272173	CNVD
Melanoma	16977458	CNVD
Glioblastoma multiforme	17369134	CNVD
Chagasic megaesophagus	20163722	CNVD
Melanoma	19566914	CNVD
Squamous cell cancer	19047905	CNVD
Lung adenocarcinoma	19525976	CNVD
Lung cancer	19525976	CNVD
Hodgkin''s lymphoma	18179710	CNVD
Glioma	20126413	CNVD
Melanoma	17363583	CNVD
Glioblastoma multiforme	19115005	CNVD
Glioblastoma multiforme	21138945	CNVD
Adenoid cystic carcinoma	18332873	CNVD
Cancer	20581869	CNVD
Oral cancer	22144094	CNVD
Barrett''s syndrome	19417022	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Ovarian clear cell carcinoma	21343371	CNVD
Acute myeloid leukemia	21251322	CNVD
Oral cancer	21386901	CNVD
Breast cancer	21364760	CNVD
Acute myeloid leukemia	17237825	CNVD
Pancreatic ductal adenocarcinoma	19077451	CNVD
early-passage human iPS cells	21368824	CNVD
Breast cancer	21858162	CNVD

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:22661400-22670600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr9:22668000-22668200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr9:22668800-22671000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr9:22669400-22669600	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
5	chr9:22669600-22672000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr9:22670600-22672000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr9:22671000-22680800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr9:22671200-22672200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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