Variant report

Variant	nsv8605
Chromosome Location	chr10:19746007-19754802
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 433 )
Associated
traits (count: 41 )

Variant overlapped rSNPs/rCNVs (count:433 , 50 per page) page: 1 2 3 4 5 6 7 ... 9

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs527523972	chr10:19746011-19746012	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs563754167	chr10:19746035-19746036	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs376170385	chr10:19746050-19746051	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs185625877	chr10:19746055-19746056	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs74118951	chr10:19746074-19746075	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
6	rs538780408	chr10:19746102-19746103	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs34917205	chr10:19746137-19746138	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
8	rs552037898	chr10:19746153-19746154	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs546013520	chr10:19746199-19746200	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs564235351	chr10:19746212-19746213	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs141304087	chr10:19746301-19746302	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs554887152	chr10:19746305-19746306	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs191173306	chr10:19746311-19746312	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs146978038	chr10:19746337-19746338	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs182546718	chr10:19746347-19746348	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs577341982	chr10:19746351-19746352	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs76328201	chr10:19746365-19746366	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs138146472	chr10:19746455-19746456	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs373843099	chr10:19746461-19746462	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs187676490	chr10:19746479-19746480	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs143724253	chr10:19746541-19746542	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs386741629	chr10:19746542-19746543	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs74118953	chr10:19746544-19746545	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
24	rs12265405	chr10:19746600-19746601	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
25	rs538557474	chr10:19746613-19746614	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs376693659	chr10:19746624-19746625	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs564140766	chr10:19746628-19746629	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs373858224	chr10:19746632-19746633	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs531491948	chr10:19746634-19746635	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs550797530	chr10:19746704-19746705	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs569004477	chr10:19746766-19746767	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs147231662	chr10:19746780-19746781	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs138678279	chr10:19746806-19746807	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs374024423	chr10:19746811-19746812	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs73595814	chr10:19746818-19746819	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
36	rs114524379	chr10:19746826-19746827	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs191966865	chr10:19746828-19746829	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs571885854	chr10:19746832-19746833	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs556341012	chr10:19746958-19746959	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs149354119	chr10:19746972-19746973	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs541874534	chr10:19746975-19746976	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs183087929	chr10:19746998-19746999	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs187426342	chr10:19747007-19747008	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs367635514	chr10:19747011-19747012	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs111677841	chr10:19747016-19747017	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs571972279	chr10:19747018-19747019	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs545786360	chr10:19747078-19747079	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs191964753	chr10:19747088-19747089	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs531450220	chr10:19747099-19747100	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs543201466	chr10:19747125-19747126	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:41)

Disease	PMID	Source
Medulloblastoma	16783165	CNVD
Breast cancer	17133270	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Breast cancer	17603634	CNVD
Endometrial cancer	22040021	CNVD
Glioblastoma multiforme	21080181	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Phyllodes tumor	17334353	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Lung cancer	18438408	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Ewing''s sarcoma	17952124	CNVD
Oral cancer	21386901	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	21858162	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Intracranial aneurysm	16715129	CNVD
Cutaneous T-cell lymphoma	21881587	CNVD
Myelofibrosis	22110671	CNVD
Multiple myeloma	16616336	CNVD
T-cell lymphomas	19863542	CNVD
Esophageal cancer	21851588	CNVD
small cell lung cancer	20016488	CNVD
Epilepsy	22083797	CNVD
Olfactory neuroblastoma	18408657	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Breast cancer	21364760	CNVD
Ovarian clear cell carcinoma	21343371	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:19740000-19781200	Weak transcription	Duodenum Mucosa	Duodenum
2	chr10:19740600-19750200	Weak transcription	Fetal Intestine Large	intestine
3	chr10:19743000-19750400	Weak transcription	Fetal Intestine Small	intestine
4	chr10:19750200-19751400	Strong transcription	Fetal Intestine Large	intestine
5	chr10:19750400-19750800	Strong transcription	Fetal Intestine Small	intestine
6	chr10:19750800-19754400	Weak transcription	Fetal Intestine Small	intestine
7	chr10:19751400-19777600	Weak transcription	Fetal Intestine Large	intestine
8	chr10:19754400-19754800	Strong transcription	Fetal Intestine Small	intestine
9	chr10:19754800-19755800	Weak transcription	Fetal Intestine Small	intestine

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