Variant report

Variant	nsv8606
Chromosome Location	chr10:19764473-19768321
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 198 )
Associated
traits (count: 41 )

Variant overlapped rSNPs/rCNVs (count:198 , 50 per page) page: 1 2 3 4

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs573849062	chr10:19764508-19764509	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs188179518	chr10:19764511-19764512	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs146728761	chr10:19764517-19764518	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs567093354	chr10:19764558-19764559	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs567995379	chr10:19764578-19764579	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs139284505	chr10:19764581-19764582	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs575513093	chr10:19764584-19764585	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs542904973	chr10:19764628-19764629	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs537664445	chr10:19764634-19764635	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs114521027	chr10:19764673-19764674	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs547943697	chr10:19764676-19764677	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs373608584	chr10:19764701-19764702	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs554214944	chr10:19764704-19764705	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs572607616	chr10:19764710-19764711	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs10827490	chr10:19764739-19764740	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
16	rs577886998	chr10:19764752-19764753	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs35768167	chr10:19764758-19764759	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
18	rs7095412	chr10:19764797-19764798	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
19	rs537352138	chr10:19764814-19764815	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs549263214	chr10:19764833-19764834	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs116395933	chr10:19764836-19764837	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs76109789	chr10:19764840-19764841	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs4748589	chr10:19764851-19764852	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
24	rs530304423	chr10:19764865-19764866	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs368280325	chr10:19764878-19764879	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs117972895	chr10:19764911-19764912	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs191446939	chr10:19764978-19764979	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs114169061	chr10:19764983-19764984	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs115206942	chr10:19765004-19765005	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs115805906	chr10:19765045-19765046	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs76148081	chr10:19765046-19765047	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs10764033	chr10:19765063-19765064	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
33	rs10764034	chr10:19765073-19765074	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
34	rs182819531	chr10:19765121-19765122	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs59945095	chr10:19765122-19765123	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
36	rs187965518	chr10:19765137-19765138	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs373798127	chr10:19765155-19765156	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs563196223	chr10:19765157-19765158	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs566927857	chr10:19765183-19765184	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs7902270	chr10:19765204-19765205	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
41	rs370384061	chr10:19765211-19765212	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs191349833	chr10:19765231-19765232	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs116491169	chr10:19765253-19765254	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs567598892	chr10:19765254-19765255	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs7919478	chr10:19765293-19765294	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
46	rs74118962	chr10:19765297-19765298	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
47	rs7902426	chr10:19765360-19765361	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
48	rs11010108	chr10:19765370-19765371	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
49	rs7922824	chr10:19765381-19765382	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
50	rs550180654	chr10:19765382-19765383	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:41)

Disease	PMID	Source
Medulloblastoma	16783165	CNVD
Breast cancer	17133270	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Breast cancer	17603634	CNVD
Endometrial cancer	22040021	CNVD
Glioblastoma multiforme	21080181	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Phyllodes tumor	17334353	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Lung cancer	18438408	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Ewing''s sarcoma	17952124	CNVD
Oral cancer	21386901	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	21858162	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Intracranial aneurysm	16715129	CNVD
Cutaneous T-cell lymphoma	21881587	CNVD
Myelofibrosis	22110671	CNVD
Multiple myeloma	16616336	CNVD
T-cell lymphomas	19863542	CNVD
Esophageal cancer	21851588	CNVD
small cell lung cancer	20016488	CNVD
Epilepsy	22083797	CNVD
Olfactory neuroblastoma	18408657	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Breast cancer	21364760	CNVD
Ovarian clear cell carcinoma	21343371	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:19740000-19781200	Weak transcription	Duodenum Mucosa	Duodenum
2	chr10:19751400-19777600	Weak transcription	Fetal Intestine Large	intestine
3	chr10:19756200-19777600	Weak transcription	Fetal Intestine Small	intestine
4	chr10:19767200-19767400	Enhancers	Pancreatic Islets	Pancreatic Islet
5	chr10:19768000-19768200	Enhancers	Pancreatic Islets	Pancreatic Islet

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