Variant report

Variant	nsv8619
Chromosome Location	chr10:38931103-38978827
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:1)
LncRNA
region (count:31)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:1 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:38965666..38966167-chr6:29670107..29670640,2	MCF-7	breast:

(count:31 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-SEPT7L-2	chr10:38944359-38944464	ENSG00000233867
2	lnc-SEPT7L-2	chr10:38977952-38978079	NONHSAT012835
3	lnc-SEPT7L-2	chr10:38965036-38965210	NONHSAT012835
4	lnc-SEPT7L-2	chr10:38944359-38944464	NONHSAT012835
5	lnc-SEPT7L-2	chr10:38934102-38934317	NONHSAT012835
6	lnc-SEPT7L-2	chr10:38978430-38978565	NONHSAT012836
7	lnc-ZNF37A-16	chr10:38929039-38931213	NONHSAT012834
8	lnc-SEPT7L-2	chr10:38944359-38944464	ENSG00000233867
9	lnc-SEPT7L-2	chr10:38965036-38965210	ENSG00000233867
10	lnc-SEPT7L-2	chr10:38939444-38939552	ENSG00000233867
11	lnc-SEPT7L-2	chr10:38977952-38978079	ENSG00000233867
12	lnc-SEPT7L-2	chr10:38973919-38974323	NONHSAT012836
13	lnc-SEPT7L-2	chr10:38933913-38934317	ENSG00000233867
14	lnc-SEPT7L-2	chr10:38943366-38943409	ENSG00000233867
15	lnc-SEPT7L-2	chr10:38965036-38965210	ENSG00000233867
16	lnc-SEPT7L-2	chr10:38939444-38939552	ENSG00000233867
17	lnc-SEPT7L-2	chr10:38934082-38934317	ENSG00000233867
18	lnc-SEPT7L-2	chr10:38938424-38938559	ENSG00000233867
19	lnc-SEPT7L-2	chr10:38977952-38978079	ENSG00000233867
20	lnc-SEPT7L-2	chr10:38974088-38974323	NONHSAT012837
21	lnc-SEPT7L-2	chr10:38943366-38943515	ENSG00000233867
22	lnc-SEPT7L-2	chr10:38943366-38943515	ENSG00000233867
23	lnc-SEPT7L-2	chr10:38938424-38938559	NONHSAT012835
24	lnc-SEPT7L-2	chr10:38943366-38943515	NONHSAT012835
25	lnc-SEPT7L-2	chr10:38978430-38978565	NONHSAT012838
26	lnc-SEPT7L-2	chr10:38944936-38945056	ENSG00000233867
27	lnc-SEPT7L-2	chr10:38939444-38939552	NONHSAT012835
28	lnc-SEPT7L-2	chr10:38939444-38939552	ENSG00000233867
29	lnc-SEPT7L-2	chr10:38937626-38937724	ENSG00000233867
30	lnc-SEPT7L-2	chr10:38977632-38977730	NONHSAT012838
31	lnc-SEPT7L-2	chr10:38938424-38938559	ENSG00000233867

No data

Extended variants
information (count: 239 )
Associated
traits (count: 40 )

Variant overlapped rSNPs/rCNVs (count:239 , 50 per page) page: 1 2 3 4 5

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs185634105	chr10:38931116-38931117	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
2	rs150631256	chr10:38931119-38931120	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
3	rs61842018	chr10:38931125-38931126	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
4	rs573355019	chr10:38931151-38931152	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
5	rs61842019	chr10:38931153-38931154	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
6	rs542451491	chr10:38931156-38931157	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
7	rs555745448	chr10:38931169-38931170	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
8	rs575899855	chr10:38931182-38931183	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
9	rs544254684	chr10:38931186-38931187	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
10	rs564490948	chr10:38931194-38931195	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
11	rs533403117	chr10:38931209-38931210	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
12	rs540706503	chr10:38931211-38931212	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
13	rs61842027	chr10:38933917-38933918	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
14	rs4881611	chr10:38933959-38933960	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
15	rs4442468	chr10:38933971-38933972	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
16	rs551963263	chr10:38933986-38933987	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
17	rs4272728	chr10:38934016-38934017	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
18	rs538696700	chr10:38934018-38934019	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
19	rs142451835	chr10:38934053-38934054	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
20	rs558620459	chr10:38934074-38934075	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
21	rs7893509	chr10:38934081-38934082	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
22	rs565842197	chr10:38934085-38934086	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
23	rs534766112	chr10:38934098-38934099	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
24	rs554487923	chr10:38934146-38934147	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
25	rs10870454	chr10:38934158-38934159	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
26	rs543335502	chr10:38934165-38934166	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
27	rs557320432	chr10:38934167-38934168	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
28	rs576903769	chr10:38934174-38934175	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
29	rs545856058	chr10:38934185-38934186	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
30	rs4272729	chr10:38934217-38934218	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
31	rs559444301	chr10:38934226-38934227	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
32	rs7904381	chr10:38934232-38934233	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
33	rs4253994	chr10:38934239-38934240	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
34	rs547753592	chr10:38934255-38934256	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
35	rs528196282	chr10:38934274-38934275	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
36	rs3970194	chr10:38934276-38934277	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
37	rs541580639	chr10:38934287-38934288	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
38	rs561309827	chr10:38934296-38934297	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
39	rs569413655	chr10:38934306-38934307	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
40	rs530347572	chr10:38934311-38934312	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
41	rs4070339	chr10:38934312-38934313	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
42	rs9664976	chr10:38934314-38934315	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
43	rs182091581	chr10:38934317-38934318	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
44	rs541375119	chr10:38937627-38937628	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
45	rs182138036	chr10:38937629-38937630	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
46	rs185490882	chr10:38937631-38937632	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
47	rs530341179	chr10:38937638-38937639	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
48	rs550094362	chr10:38937644-38937645	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
49	rs190738658	chr10:38937646-38937647	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
50	rs532583859	chr10:38937663-38937664	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a

Variant related diseases (count:40)

Disease	PMID	Source
Endometrioid adenocarcinoma	16974079	CNVD
Breast cancer	17603634	CNVD
Endometrial cancer	22040021	CNVD
Glioblastoma multiforme	21080181	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Phyllodes tumor	17334353	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Lung cancer	18438408	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Ewing''s sarcoma	17952124	CNVD
Oral cancer	21386901	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Breast cancer	21858162	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
T-cell lymphomas	19863542	CNVD
Esophageal cancer	21851588	CNVD
Non-muscle invasive bladder neoplasm	19445696	CNVD
Prostate cancer	18632612	CNVD
Glioblastoma multiforme	22286061	CNVD
Colorectal cancer	20459617	CNVD
Ovine squamous-cell carcinoma	17599052	CNVD
Central neurocytomas	17123091	CNVD
Neurocytoma	17123091	CNVD
small cell lung cancer	20016488	CNVD
Schizophrenia	20967226	CNVD
Myelofibrosis	22110671	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
Breast cancer	21509527	CNVD
Breast cancer	22522925	CNVD

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:38968800-38969000	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived

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