Variant report

Variant	nsv8623
Chromosome Location	chr10:42739433-42775294
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:42673795..42674377-chr10:42765091..42765784,2	MCF-7	breast:
2	chr10:42739123..42739644-chr10:101379768..101380454,2	HCT-116	colon:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-CCNYL2-6	chr10:42775182-42777267	NONHSAT012861
2	lnc-BMS1-7	chr10:42746444-42746645	NONHSAT012859

Variant related genes	Relation type
ENSG00000155287	chromatin interactions

Extended variants
information (count: 197 )
Associated
traits (count: 55 )

Variant overlapped rSNPs/rCNVs (count:197 , 50 per page) page: 1 2 3 4

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs199605957	chr10:42739458-42739459	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
2	rs528263060	chr10:42739478-42739479	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
3	rs547883284	chr10:42739574-42739575	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
4	rs567786645	chr10:42739583-42739584	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
5	rs71014241	chr10:42739591-42739592	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
6	rs530437912	chr10:42739602-42739603	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
7	rs60680917	chr10:42739628-42739629	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
8	rs182048913	chr10:42739645-42739646	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs539365572	chr10:42739778-42739779	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs76692251	chr10:42739786-42739787	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs76895989	chr10:42739795-42739796	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs377364838	chr10:42739799-42739800	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs186068463	chr10:42739869-42739870	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs567251846	chr10:42739877-42739878	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs189177859	chr10:42739919-42739920	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs555124210	chr10:42739920-42739921	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs574953016	chr10:42739922-42739923	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs543918306	chr10:42739992-42739993	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs549863543	chr10:42740044-42740045	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs555258172	chr10:42740045-42740046	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs181116740	chr10:42740047-42740048	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs186393203	chr10:42740093-42740094	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs192939421	chr10:42740112-42740113	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs564076249	chr10:42740122-42740123	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs546120642	chr10:42740136-42740137	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs78956662	chr10:42740207-42740208	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs200364624	chr10:42740216-42740217	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs558761047	chr10:42740228-42740229	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs191712170	chr10:42740275-42740276	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs572721364	chr10:42740278-42740279	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs182842533	chr10:42740301-42740302	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs561526737	chr10:42740310-42740311	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs560023143	chr10:42740316-42740317	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs200906984	chr10:42740322-42740323	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs550400145	chr10:42740377-42740378	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs201693143	chr10:42740401-42740402	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs77187312	chr10:42740483-42740484	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs201218101	chr10:42740526-42740527	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs572281277	chr10:42740528-42740529	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs7914496	chr10:42740542-42740543	Weak transcription	n/a	n/a	Overlapped CNVs	mRNA abundance
41	rs553923343	chr10:42740550-42740551	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs75335663	chr10:42740565-42740566	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs532749876	chr10:42740571-42740572	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs552839212	chr10:42740582-42740583	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs566350240	chr10:42740610-42740611	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs190886152	chr10:42740616-42740617	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs13328751	chr10:42740617-42740618	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs13328752	chr10:42740629-42740630	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs548834107	chr10:42740630-42740631	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs568650616	chr10:42740634-42740635	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:55)

Disease	PMID	Source
Pancreatic endocrine tumor	17639061	CNVD
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Lung cancer	18438408	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Ewing''s sarcoma	17952124	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
Esophageal cancer	21851588	CNVD
Prostate cancer	18632612	CNVD
Breast cancer	21509527	CNVD
Autism	18414403	CNVD
Cockayne syndrome	18421352	CNVD
Glioblastoma	16823260	CNVD
Medulloblastoma	16968546	CNVD
Neuroblastoma	17533364	CNVD
Mental retardation	21062444	CNVD
Cancer	21183584	CNVD
T-cell lymphomas	19863542	CNVD
Testicular germ cell tumor	18059402	CNVD
Squamous cell cancer	21044232	CNVD
Glioma	21971842	CNVD
Cancer	21637783	CNVD
Non-small cell lung cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Colorectal cancer	20709793	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Obesity	20622171	CNVD
Breast cancer	21364760	CNVD
Myelofibrosis	22110671	CNVD
Schizophrenia	22241247	CNVD
Intellectual disability	21811512	CNVD
Papillary thyroid carcinoma	21436994	CNVD
Hirschsprung''s Disease	21712996	CNVD
Non-syndromic sensorineural hearing loss	15273396	CNVD
Obesity	21956041	CNVD
Lung cancer	21569311	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
Renal cell carcinoma	18765545	CNVD
Breast cancer	21785460	CNVD
Autism	20531469	CNVD
small cell lung cancer	20016488	CNVD

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:42732400-42742600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr10:42742600-42742800	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived

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