Variant report

Variant nsv865
Chromosome Location chr12:104030102-104074864
allele n/a
Outlinks Ensembl   UCSC
Chromatin state (count:337 , 50 per page) page: 1 2 3 4 5 6 7
No. Chromosome Location Chromatin state Cell line Tissue
1 chr12:104023600-104033800 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
2 chr12:104027000-104037200 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
3 chr12:104029600-104031600 Weak transcription Spleen Spleen
4 chr12:104030200-104032200 Enhancers Ganglion Eminence derived primary cultured neurospheres brain
5 chr12:104030400-104031400 Enhancers Cortex derived primary cultured neurospheres brain
6 chr12:104030800-104031000 Enhancers H9 Derived Neuron Cultured Cells ES cell derived
7 chr12:104030800-104031200 Enhancers Brain Germinal Matrix brain
8 chr12:104031600-104033200 Strong transcription Spleen Spleen
9 chr12:104033200-104062200 Weak transcription Spleen Spleen
10 chr12:104033800-104034200 Strong transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
11 chr12:104033800-104034200 ZNF genes & repeats GM12878-XiMat blood
12 chr12:104034200-104035200 Flanking Active TSS GM12878-XiMat blood
13 chr12:104034200-104040600 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
14 chr12:104034400-104034600 Enhancers Colon Smooth Muscle Colon
15 chr12:104034400-104035400 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Female --
16 chr12:104034400-104035400 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Male --
17 chr12:104035200-104035400 Enhancers GM12878-XiMat blood
18 chr12:104035600-104036000 Weak transcription Colon Smooth Muscle Colon
19 chr12:104036000-104036600 Enhancers HepG2 liver
20 chr12:104036000-104036800 Enhancers Stomach Smooth Muscle stomach
21 chr12:104036200-104037400 Enhancers Colon Smooth Muscle Colon
22 chr12:104036200-104037400 Enhancers Rectal Smooth Muscle rectum
23 chr12:104036400-104036600 Enhancers H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
24 chr12:104036800-104037400 ZNF genes & repeats H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
25 chr12:104037200-104037400 ZNF genes & repeats iPS DF 6.9 Cell Line embryonic stem cell
26 chr12:104037400-104038400 Weak transcription Rectal Smooth Muscle rectum
27 chr12:104037400-104038800 Weak transcription Colon Smooth Muscle Colon
28 chr12:104037400-104039600 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
29 chr12:104038400-104039600 Enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
30 chr12:104038400-104041600 Enhancers Rectal Smooth Muscle rectum
31 chr12:104038600-104039600 Enhancers Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
32 chr12:104038800-104039000 Enhancers Muscle Satellite Cultured Cells --
33 chr12:104038800-104041400 Enhancers Colon Smooth Muscle Colon
34 chr12:104038800-104042000 Enhancers HSMM muscle
35 chr12:104039000-104039200 Enhancers Foreskin Keratinocyte Primary Cells skin02 Skin
36 chr12:104039000-104039200 Enhancers NH-A brain
37 chr12:104039000-104040800 Weak transcription Muscle Satellite Cultured Cells --
38 chr12:104039200-104040600 Enhancers HSMMtube muscle
39 chr12:104039400-104039800 Enhancers Aorta Aorta
40 chr12:104039400-104040600 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
41 chr12:104039400-104040600 Weak transcription NH-A brain
42 chr12:104039600-104040000 Enhancers Placenta Amnion Placenta Amnion
43 chr12:104039600-104040600 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
44 chr12:104039600-104040800 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
45 chr12:104039600-104041400 Enhancers H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
46 chr12:104040000-104040400 Weak transcription Placenta Amnion Placenta Amnion
47 chr12:104040200-104041600 Enhancers Fetal Heart heart
48 chr12:104040400-104041000 Enhancers Placenta Amnion Placenta Amnion
49 chr12:104040400-104042000 Enhancers NHEK skin
50 chr12:104040400-104042200 Enhancers HMEC breast

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