Variant report
| Variant | nsv8651 |
|---|---|
| Chromosome Location | chr10:51635022-51636688 |
| allele | n/a |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
Variant overlapped rSNPs/rCNVs (count:22 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | rs371392779 | chr10:51635040-51635041 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 2 | rs587670156 | chr10:51635201-51635202 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 3 | rs587723625 | chr10:51635285-51635286 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 4 | rs375951994 | chr10:51635349-51635350 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 5 | rs375463088 | chr10:51635412-51635413 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 6 | rs7474814 | chr10:51635506-51635507 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 7 | rs587605865 | chr10:51635512-51635513 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 8 | rs587653573 | chr10:51635564-51635565 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 9 | rs587762186 | chr10:51635576-51635577 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 10 | rs79287804 | chr10:51635581-51635582 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 11 | rs587635826 | chr10:51635642-51635643 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 12 | rs587717415 | chr10:51635649-51635650 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 13 | rs587752166 | chr10:51635821-51635822 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 14 | rs587767311 | chr10:51635915-51635916 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 15 | rs587622892 | chr10:51635938-51635939 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 16 | rs587686353 | chr10:51635975-51635976 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 17 | rs2812978 | chr10:51636151-51636152 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 18 | rs587762770 | chr10:51636180-51636181 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 19 | rs587620045 | chr10:51636198-51636199 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 20 | rs188446577 | chr10:51636200-51636201 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 21 | rs587759774 | chr10:51636392-51636393 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 22 | rs376840798 | chr10:51636409-51636410 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
Variant related diseases (count:64)
| Disease | PMID | Source |
|---|---|---|
| Pancreatic endocrine tumor | 17639061 | CNVD |
| Gastric cancer | 17908304 | CNVD |
| Chordoma | 21602918 | CNVD |
| Ewing''s sarcoma | 21437220 | CNVD |
| Glioblastoma multiforme | 21080181 | CNVD |
| Medulloblastoma | 21979893 | CNVD |
| Melanoma | 18172304 | CNVD |
| Pleomorphic xanthoastrocytoma | 20730472 | CNVD |
| Thoracic aortic aneurysm | 21092924 | CNVD |
| Ewing''s sarcoma | 17952124 | CNVD |
| T-cell prolymphocytic leukemia | 19278963 | CNVD |
| Hodgkin''s lymphoma | 17606441 | CNVD |
| Acute lymphoblastic leukemia | 20435627 | CNVD |
| Acute lymphoblastic leukemia | 20724749 | CNVD |
| Autism | 22495311 | CNVD |
| Esophageal cancer | 21851588 | CNVD |
| Prostate cancer | 18632612 | CNVD |
| Autism | 18414403 | CNVD |
| Cockayne syndrome | 18421352 | CNVD |
| Glioblastoma | 16823260 | CNVD |
| Medulloblastoma | 16968546 | CNVD |
| Neuroblastoma | 17533364 | CNVD |
| Cancer | 21183584 | CNVD |
| T-cell lymphomas | 19863542 | CNVD |
| Testicular germ cell tumor | 18059402 | CNVD |
| Squamous cell cancer | 21044232 | CNVD |
| Glioma | 21971842 | CNVD |
| Cancer | 21637783 | CNVD |
| Non-small cell lung cancer | 21044232 | CNVD |
| Non-syndromic sensorineural hearing loss | 18471307 | CNVD |
| Colorectal cancer | 20709793 | CNVD |
| Endometrial cancer | 22040021 | CNVD |
| Breast cancer | 21264507 | CNVD |
| Esophageal squamous carcinoma | 21637470 | CNVD |
| Liposarcoma | 21253554 | CNVD |
| Oligodendroglial tumors | 17285580 | CNVD |
| Chronic lymphocytic leukemia | 21546498 | CNVD |
| Papillary thyroid carcinoma | 21436994 | CNVD |
| Hirschsprung''s Disease | 21712996 | CNVD |
| Non-syndromic sensorineural hearing loss | 15273396 | CNVD |
| Obesity | 21956041 | CNVD |
| Renal cell carcinoma | 18765545 | CNVD |
| Developmental delay | 21948486 | CNVD |
| Dysmorphic features | 21948486 | CNVD |
| Epilepsy | 21948486 | CNVD |
| Breast cancer | 21785460 | CNVD |
| Intellectual disability | 21948486 | CNVD |
| Intellectual disability | 22045946 | CNVD |
| Basal cell lymphoma | 16317097 | CNVD |
| Diffuse large b-cell lymphoma | 16317097 | CNVD |
| Lung cancer | 18438408 | CNVD |
| Breast cancer | 21364760 | CNVD |
| small cell lung cancer | 20016488 | CNVD |
| skeletal anomalies | 21948486 | CNVD |
| Autism | 21948486 | CNVD |
| speech delay | 21948486 | CNVD |
| Colorectal cancer | 16272173 | CNVD |
| Breast cancer | 21990379 | CNVD |
| Myelofibrosis | 22110671 | CNVD |
| Metanephric adenoma | 20802469 | CNVD |
| Melanoma | 17363583 | CNVD |
| Pancreatic cancer | 17952125 | CNVD |
| Cancer | 20164919 | CNVD |
| Breast cancer | 22522925 | CNVD |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr10:51624000-51636600 | Weak transcription | Primary mononuclear cells fromperipheralblood | Blood |
| 2 | chr10:51624000-51637000 | Weak transcription | H1 Cell Line | embryonic stem cell |
