Variant report

Variant	nsv8656
Chromosome Location	chr10:51906018-51917771
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:19)
CpG islands
(count:183)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:19 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr10:51912755-51912759	Spleen_OC	spleen:	n/a	n/a
2	CTCF	chr10:51912640-51912790	SK-N-SH_RA	brain:	n/a	n/a
3	CTCF	chr10:51909455-51909496	Kidney_OC	kidney:	n/a	n/a
4	CTCF	chr10:51911548-51911674	GM20000	blood:	n/a	n/a
5	CTCF	chr10:51912578-51912723	K562	blood:	n/a	n/a
6	CTCF	chr10:51912418-51912442	Lung_OC	lung:	n/a	n/a
7	CTCF	chr10:51906222-51906300	GM20000	blood:	n/a	n/a
8	CTCF	chr10:51913213-51913304	GM20000	blood:	n/a	n/a
9	CTCF	chr10:51912630-51912712	GM19240	blood:	n/a	n/a
10	CTCF	chr10:51906087-51906172	GM13976	blood:	n/a	n/a
11	CTCF	chr10:51912652-51912757	GM13976	blood:	n/a	n/a
12	CTCF	chr10:51912768-51912811	Spleen_OC	spleen:	n/a	n/a
13	CTCF	chr10:51913311-51913342	GM20000	blood:	n/a	n/a
14	CTCF	chr10:51912475-51912606	Kidney_OC	kidney:	n/a	n/a
15	FOSL2	chr10:51906102-51906410	HepG2	liver:	n/a	n/a
16	FOXA1	chr10:51906149-51906414	HepG2	liver:	n/a	n/a
17	RXRA	chr10:51906179-51906346	HepG2	liver:	n/a	chr10:51906249-51906258
18	SIX5	chr10:51906589-51906781	K562	blood:	n/a	n/a
19	USF1	chr10:51912411-51912645	HepG2	liver:	n/a	n/a

(count:183 , 50 per page) page: 1 2 3 4

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr10:51912805-51912855	GM19239	blood:	n/a
2	chr10:51912631-51912681	HIPEpiC	eye:	n/a
3	chr10:51912631-51912681	HMEC	breast:	n/a
4	chr10:51912631-51912681	H1-hESC	embryonic stem cell:	embryo
5	chr10:51912805-51912855	MCF-7	breast:	n/a
6	chr10:51911889-51911939	HCF	heart:	n/a
7	chr10:51912805-51912855	K562	blood:	n/a
8	chr10:51912805-51912855	BE2_C	brain:	n/a
9	chr10:51912805-51912855	NHBE	bronchial:	n/a
10	chr10:51912631-51912681	HCF	heart:	n/a
11	chr10:51912631-51912681	PrEC	prostate:	n/a
12	chr10:51912631-51912681	HRCEpiC	kidney:	n/a
13	chr10:51911889-51911939	NB4	blood:	n/a
14	chr10:51912805-51912855	SK-N-SH_RA	brain:	n/a
15	chr10:51912805-51912855	HRPEpiC	eye:	n/a
16	chr10:51912631-51912681	HCT-116	colon:	n/a
17	chr10:51912631-51912681	HCPEpiC	choroid plexus:	n/a
18	chr10:51911889-51911939	GM12878	blood:	n/a
19	chr10:51912631-51912681	CMK	blood:	n/a
20	chr10:51912805-51912855	A549	lung:	n/a
21	chr10:51912631-51912681	SAEC	small airway:	n/a
22	chr10:51911889-51911939	HRCEpiC	kidney:	n/a
23	chr10:51912805-51912855	LNCaP	prostate:	n/a
24	chr10:51912805-51912855	PFSK-1	brain:	n/a
25	chr10:51912805-51912855	Caco-2	colon:	n/a
26	chr10:51912631-51912681	HCM	heart:	n/a
27	chr10:51911889-51911939	A549	lung:	n/a
28	chr10:51912805-51912855	AoSMC	blood vessel:	n/a
29	chr10:51911889-51911939	Hepatocyte	liver:	n/a
30	chr10:51911889-51911939	SK-N-MC	brain:	n/a
31	chr10:51911889-51911939	MCF-7	breast:	n/a
32	chr10:51912805-51912855	GM06990	blood:	n/a
33	chr10:51911889-51911939	HRE	kidney:	n/a
34	chr10:51912631-51912681	AG09309	skin:	n/a
35	chr10:51912631-51912681	U87	brain:	n/a
36	chr10:51911889-51911939	BE2_C	brain:	n/a
37	chr10:51911889-51911939	PANC-1	pancreas:	n/a
38	chr10:51912631-51912681	HRPEpiC	eye:	n/a
39	chr10:51912631-51912681	IMR90	lung:	fetal
40	chr10:51911889-51911939	ECC-1	luminal epithelium:	n/a
41	chr10:51911889-51911939	HNPCEpiC	eye:	n/a
42	chr10:51912631-51912681	AG04449	skin:	fetal
43	chr10:51912631-51912681	Hela-S3	cervix:	n/a
44	chr10:51912631-51912681	SK-N-SH_RA	brain:	n/a
45	chr10:51912805-51912855	AG04449	skin:	fetal
46	chr10:51911889-51911939	SAEC	small airway:	n/a
47	chr10:51911889-51911939	IMR90	lung:	fetal
48	chr10:51912631-51912681	NT2-D1	testis:	n/a
49	chr10:51911889-51911939	LNCaP	prostate:	n/a
50	chr10:51912805-51912855	PANC-1	pancreas:	n/a

No data

Variant related genes	Relation type
SLC9A3P1	TF binding region
SLC9A3P1	CpG island

Extended variants
information (count: 17 )
Associated
traits (count: 64 )

Variant overlapped rSNPs/rCNVs (count:17 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs2813275	chr10:51906246-51906247	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
2	rs373734862	chr10:51912610-51912611	Active TSS	n/a	n/a	Overlapped CNVs	n/a
3	rs111416498	chr10:51912616-51912617	Active TSS	n/a	n/a	Overlapped CNVs	n/a
4	rs2805271	chr10:51912623-51912624	Active TSS	n/a	n/a	Overlapped CNVs	n/a
5	rs377528559	chr10:51912644-51912645	Active TSS	n/a	n/a	Overlapped CNVs	n/a
6	rs2813269	chr10:51912648-51912649	Active TSS	n/a	n/a	Overlapped CNVs	n/a
7	rs548578905	chr10:51912708-51912709	Active TSS	n/a	n/a	Overlapped CNVs	n/a
8	rs568438105	chr10:51912778-51912779	Active TSS	n/a	n/a	Overlapped CNVs	n/a
9	rs2813267	chr10:51912781-51912782	Active TSS	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
10	rs527704853	chr10:51912799-51912800	Active TSS	n/a	n/a	Overlapped CNVs	n/a
11	rs547831987	chr10:51912806-51912807	Active TSS	n/a	n/a	Overlapped CNVs	n/a
12	rs570862211	chr10:51912839-51912840	Active TSS	n/a	n/a	Overlapped CNVs	n/a
13	rs540021628	chr10:51912895-51912896	Active TSS	n/a	n/a	Overlapped CNVs	n/a
14	rs550149056	chr10:51912929-51912930	Active TSS	n/a	n/a	Overlapped CNVs	n/a
15	rs112620061	chr10:51912958-51912959	Active TSS	n/a	n/a	Overlapped CNVs	n/a
16	rs112475578	chr10:51912961-51912962	Active TSS	n/a	n/a	Overlapped CNVs	n/a
17	rs2813266	chr10:51912962-51912963	Active TSS	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:64)

Disease	PMID	Source
Pancreatic endocrine tumor	17639061	CNVD
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Ewing''s sarcoma	17952124	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
Esophageal cancer	21851588	CNVD
Prostate cancer	18632612	CNVD
Autism	18414403	CNVD
Cockayne syndrome	18421352	CNVD
Glioblastoma	16823260	CNVD
Medulloblastoma	16968546	CNVD
Neuroblastoma	17533364	CNVD
Cancer	21183584	CNVD
T-cell lymphomas	19863542	CNVD
Testicular germ cell tumor	18059402	CNVD
Squamous cell cancer	21044232	CNVD
Glioma	21971842	CNVD
Cancer	21637783	CNVD
Non-small cell lung cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Colorectal cancer	20709793	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Papillary thyroid carcinoma	21436994	CNVD
Hirschsprung''s Disease	21712996	CNVD
Non-syndromic sensorineural hearing loss	15273396	CNVD
Obesity	21956041	CNVD
Renal cell carcinoma	18765545	CNVD
Developmental delay	21948486	CNVD
Dysmorphic features	21948486	CNVD
Epilepsy	21948486	CNVD
Breast cancer	21785460	CNVD
Intellectual disability	21948486	CNVD
Intellectual disability	22045946	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Lung cancer	18438408	CNVD
Breast cancer	21364760	CNVD
small cell lung cancer	20016488	CNVD
skeletal anomalies	21948486	CNVD
Autism	21948486	CNVD
speech delay	21948486	CNVD
Colorectal cancer	16272173	CNVD
Breast cancer	21990379	CNVD
Myelofibrosis	22110671	CNVD
Metanephric adenoma	20802469	CNVD
Autism	20841430	CNVD
Cancer	20164919	CNVD
Pancreatic cancer	17952125	CNVD
Breast cancer	22522925	CNVD

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:51912600-51913000	Active TSS	Brain Germinal Matrix	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links