Variant report

Variant	nsv868940
Chromosome Location	chr10:116933802-117032437
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:7)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:7 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:116956281..116959165-chr10:116966788..116968734,2	MCF-7	breast:
2	chr10:116940963..116942966-chr10:116944377..116947212,2	MCF-7	breast:
3	chr10:116956281..116959165-chr10:116966788..116968734,2	MCF-7	breast:
4	chr10:116931808..116934007-chr10:116939666..116942604,2	MCF-7	breast:
5	chr10:116940963..116942966-chr10:116944377..116947212,2	MCF-7	breast:
6	chr10:116931808..116934007-chr10:116939666..116942604,2	MCF-7	breast:
7	chr10:116931581..116933131-chr10:116933638..116936531,2	MCF-7	breast:

No data

Extended variants
information (count: 3062 )
Associated
traits (count: 69 )

Variant overlapped rSNPs/rCNVs (count:3062 , 50 per page) page: 1 2 3 4 5 6 7 ... 62

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs566719752	chr10:116933807-116933808	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs116005672	chr10:116933823-116933824	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs184068986	chr10:116933862-116933863	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs567463001	chr10:116933912-116933913	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs113201182	chr10:116933923-116933924	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs532714675	chr10:116933954-116933955	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs555914957	chr10:116933957-116933958	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs1663142	chr10:116933970-116933971	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
9	rs11197100	chr10:116934001-116934002	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
10	rs376374023	chr10:116934087-116934088	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs573056339	chr10:116934123-116934124	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs540437870	chr10:116934125-116934126	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs12572324	chr10:116934164-116934165	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs1264755	chr10:116934207-116934208	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
15	rs139511644	chr10:116934259-116934260	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs534491323	chr10:116934261-116934262	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs544576659	chr10:116934282-116934283	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs550710734	chr10:116934375-116934376	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs1264756	chr10:116934378-116934379	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
20	rs533462412	chr10:116934417-116934418	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs149705467	chr10:116934459-116934460	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs545470683	chr10:116934490-116934491	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs560577945	chr10:116934495-116934496	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs75970516	chr10:116934572-116934573	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs369768220	chr10:116934586-116934587	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs549221938	chr10:116934647-116934648	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs369940232	chr10:116934662-116934663	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs528758809	chr10:116934689-116934690	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs372834720	chr10:116934694-116934695	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs531542342	chr10:116934709-116934710	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs193166915	chr10:116934712-116934713	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs571204844	chr10:116934730-116934731	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs551039492	chr10:116934731-116934732	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs538253050	chr10:116934743-116934744	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs148563617	chr10:116934754-116934755	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs565455085	chr10:116934755-116934756	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs371175604	chr10:116934760-116934761	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs145631204	chr10:116934910-116934911	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs555715202	chr10:116934959-116934960	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs573718737	chr10:116934970-116934971	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs375427380	chr10:116934971-116934972	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs574263756	chr10:116934976-116934977	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs147746022	chr10:116934986-116934987	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs76614968	chr10:116935015-116935016	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs537814657	chr10:116935035-116935036	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs10885664	chr10:116935048-116935049	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
47	rs10885665	chr10:116935115-116935116	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
48	rs184993629	chr10:116935194-116935195	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs572601217	chr10:116935202-116935203	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs11197101	chr10:116935237-116935238	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a

Variant related diseases (count:69)

Disease	PMID	Source
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Ewing''s sarcoma	17952124	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Prostate cancer	18632612	CNVD
Cockayne syndrome	18421352	CNVD
Glioblastoma	16823260	CNVD
Medulloblastoma	16968546	CNVD
Neuroblastoma	17533364	CNVD
Squamous cell cancer	21044232	CNVD
Glioma	21971842	CNVD
Cancer	21637783	CNVD
Non-small cell lung cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Colorectal cancer	20709793	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Lung cancer	18438408	CNVD
Medulloblastoma	16783165	CNVD
Breast cancer	21785460	CNVD
Acute myeloid leukemia	20729466	CNVD
Paraganglioma	17535989	CNVD
Gastrointestinal stromal cancer	17535989	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Pulmonary chondroma	17535989	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	17603634	CNVD
Glioblastoma multiforme	17387387	CNVD
Wilms tumour	21544195	CNVD
Prostate cancer	16573809	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Breast cancer	16608533	CNVD
small cell lung cancer	20016488	CNVD
Glioblastoma multiforme	17002787	CNVD
Breast cancer	17393978	CNVD
Ovarian cancer	21720365	CNVD
Splenic marginal zone lymphoma	21957467	CNVD
Cornelia de Lange syndrome	24599119	CNVD
T-cell lymphomas	19863542	CNVD
Breast cancer	16397240	CNVD
Urothelial carcinoma	21177765	CNVD
Chronic lymphocytic leukemia	18645599	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Hepatocellular carcinoma	16750200	CNVD
Barrett''s syndrome	19417022	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Breast cancer	21364760	CNVD
Myelofibrosis	22110671	CNVD
Glioblastoma multiforme	22286061	CNVD
Barrett''s adenocarcinoma	18663352	CNVD
Neuroticism	17667963	CNVD
Malignant fibrous histiocytomas	21085701	CNVD
Myxofibrosarcoma	16751306	CNVD
Breast cancer	17133270	CNVD
Pancreatic cancer	17952125	CNVD
Breast cancer	22522925	CNVD
Cancer	20164919	CNVD

Chromatin state (count:90 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:116923800-116935600	Weak transcription	Fetal Brain Male	brain
2	chr10:116924400-116936000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr10:116926600-116951400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr10:116932400-116940400	Weak transcription	Aorta	Aorta
5	chr10:116937000-116939400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr10:116943000-116943400	Enhancers	Pancreatic Islets	Pancreatic Islet
7	chr10:116959400-116959600	Enhancers	Pancreatic Islets	Pancreatic Islet
8	chr10:116964600-116964800	Enhancers	Primary T helper naive cells from peripheral blood	blood
9	chr10:116964800-116966800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
10	chr10:116966600-116966800	Weak transcription	Liver	Liver
11	chr10:116966800-116967000	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
12	chr10:116966800-116967000	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr10:116966800-116967000	ZNF genes & repeats	H9 Cell Line	embryonic stem cell
14	chr10:116966800-116967000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr10:116966800-116967000	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
16	chr10:116966800-116967000	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
17	chr10:116966800-116967000	Flanking Bivalent TSS/Enh	Primary T helper memory cells from peripheral blood 2	blood
18	chr10:116966800-116967000	ZNF genes & repeats	Primary T helper naive cells from peripheral blood	blood
19	chr10:116966800-116967000	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 1	blood
20	chr10:116966800-116967000	Flanking Bivalent TSS/Enh	Primary T helper cells PMA-I stimulated	--
21	chr10:116966800-116967000	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood
22	chr10:116966800-116967000	ZNF genes & repeats	Primary T regulatory cells fromperipheralblood	blood
23	chr10:116966800-116967000	ZNF genes & repeats	Primary T killer memory cells from peripheral blood	blood
24	chr10:116966800-116967000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr10:116966800-116967000	ZNF genes & repeats	Liver	Liver
26	chr10:116966800-116967000	ZNF genes & repeats	Colon Smooth Muscle	Colon
27	chr10:116966800-116967000	ZNF genes & repeats	Fetal Kidney	kidney
28	chr10:116966800-116967000	ZNF genes & repeats	Stomach Mucosa	stomach
29	chr10:116967000-116967400	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
30	chr10:116967000-116967400	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
31	chr10:116967000-116967400	Weak transcription	Liver	Liver
32	chr10:116967000-116967400	Active TSS	Monocytes-CD14+_RO01746	blood
33	chr10:116967000-116967400	Active TSS	Osteobl	bone
34	chr10:116967000-116967600	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr10:116967000-116967600	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
36	chr10:116967000-116967600	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
37	chr10:116967000-116967600	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
38	chr10:116967000-116967600	Active TSS	GM12878-XiMat	blood
39	chr10:116967000-116967800	Active TSS	HMEC	breast
40	chr10:116967000-116968200	Active TSS	NHDF-Ad	bronchial
41	chr10:116967000-116969400	Weak transcription	Colon Smooth Muscle	Colon
42	chr10:116967000-116980400	Weak transcription	Fetal Kidney	kidney
43	chr10:116967200-116967600	Active TSS	Hela-S3	cervix
44	chr10:116967400-116967600	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
45	chr10:116967400-116967600	Flanking Active TSS	Liver	Liver
46	chr10:116967400-116967800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
47	chr10:116967400-116968400	Enhancers	Dnd41	blood
48	chr10:116967600-116967800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
49	chr10:116967600-116967800	Enhancers	Liver	Liver
50	chr10:116967600-116968200	Weak transcription	Aorta	Aorta

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