Variant report

Variant	nsv8691
Chromosome Location	chr1:196710764-196927898
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1000)
CpG islands
(count:855)
Chromatin interactive
region (count:32)
LncRNA
region (count:31)
Mature miRNA
region (count: 0)
miRNA target
sites (count:1)

(count:1000 , 50 per page) page: 1 2 3 4 5 6 7 ... 20

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr1:196712502-196712701	K562	blood:	n/a	n/a
2	ARID3A	chr1:196856986-196857227	HepG2	liver:	n/a	n/a
3	ATF1	chr1:196920683-196920808	K562	blood:	n/a	n/a
4	ATF2	chr1:196920857-196921198	GM12878	blood:	n/a	n/a
5	ATF2	chr1:196920798-196921176	GM12878	blood:	n/a	n/a
6	BACH1	chr1:196866267-196866431	H1-hESC	embryonic stem cell:	n/a	n/a
7	BATF	chr1:196743800-196744098	GM12878	blood:	n/a	chr1:196743977-196743985
8	BATF	chr1:196920821-196921204	GM12878	blood:	n/a	n/a
9	BATF	chr1:196920903-196921118	GM12878	blood:	n/a	n/a
10	BATF	chr1:196856972-196857380	GM12878	blood:	n/a	chr1:196857241-196857249
11	BATF	chr1:196857035-196857206	GM12878	blood:	n/a	n/a
12	BCL11A	chr1:196856976-196857372	GM12878	blood:	n/a	n/a
13	BHLHE40	chr1:196920921-196921226	GM12878	blood:	n/a	n/a
14	BHLHE40	chr1:196902803-196903015	K562	blood:	n/a	n/a
15	CBX3	chr1:196855776-196855984	K562	blood:	n/a	n/a
16	CBX3	chr1:196902544-196903655	K562	blood:	n/a	n/a
17	CBX3	chr1:196855726-196856081	K562	blood:	n/a	n/a
18	CBX3	chr1:196902699-196903046	K562	blood:	n/a	n/a
19	CCNT2	chr1:196902726-196903313	K562	blood:	n/a	n/a
20	CEBPB	chr1:196868753-196869031	A549	lung:	n/a	n/a
21	CEBPB	chr1:196910749-196910930	H1-hESC	embryonic stem cell:	n/a	n/a
22	CEBPB	chr1:196916577-196916873	IMR90	lung:	n/a	chr1:196916715-196916728 chr1:196916716-196916727 chr1:196916717-196916726 chr1:196916715-196916726
23	CEBPB	chr1:196848041-196848299	Hela-S3	cervix:	n/a	chr1:196848177-196848188
24	CEBPB	chr1:196868787-196869010	H1-hESC	embryonic stem cell:	n/a	n/a
25	CEBPB	chr1:196848074-196848355	IMR90	lung:	n/a	chr1:196848177-196848188
26	CEBPB	chr1:196868749-196868968	IMR90	lung:	n/a	n/a
27	CEBPB	chr1:196910745-196910996	HepG2	liver:	n/a	n/a
28	CEBPB	chr1:196916588-196916860	HepG2	liver:	n/a	chr1:196916715-196916728 chr1:196916716-196916727 chr1:196916717-196916726 chr1:196916715-196916726
29	CEBPB	chr1:196745101-196745132	IMR90	lung:	n/a	n/a
30	CEBPB	chr1:196856906-196857273	HepG2	liver:	n/a	chr1:196857077-196857088 chr1:196857110-196857123 chr1:196857112-196857123
31	CEBPB	chr1:196916603-196916881	A549	lung:	n/a	chr1:196916715-196916728 chr1:196916716-196916727 chr1:196916717-196916726 chr1:196916715-196916726
32	CEBPB	chr1:196916630-196916864	H1-hESC	embryonic stem cell:	n/a	chr1:196916715-196916728 chr1:196916716-196916727 chr1:196916717-196916726 chr1:196916715-196916726
33	CEBPB	chr1:196916608-196916825	K562	blood:	n/a	chr1:196916715-196916728 chr1:196916716-196916727 chr1:196916717-196916726 chr1:196916715-196916726
34	CEBPB	chr1:196848022-196848331	HepG2	liver:	n/a	chr1:196848177-196848188
35	CEBPB	chr1:196825838-196826029	H1-hESC	embryonic stem cell:	n/a	n/a
36	CEBPB	chr1:196825893-196826006	K562	blood:	n/a	n/a
37	CEBPB	chr1:196910739-196910903	HepG2	liver:	n/a	n/a
38	CEBPB	chr1:196792584-196792829	HepG2	liver:	n/a	chr1:196792695-196792706 chr1:196792696-196792707 chr1:196792695-196792708 chr1:196792697-196792706
39	CEBPB	chr1:196910800-196910933	K562	blood:	n/a	n/a
40	CEBPB	chr1:196792559-196792845	IMR90	lung:	n/a	chr1:196792695-196792706 chr1:196792696-196792707 chr1:196792695-196792708 chr1:196792826-196792839 chr1:196792697-196792706
41	CEBPB	chr1:196792658-196792868	A549	lung:	n/a	chr1:196792695-196792706 chr1:196792696-196792707 chr1:196792695-196792708 chr1:196792826-196792839 chr1:196792697-196792706
42	CEBPD	chr1:196910706-196910978	HepG2	liver:	n/a	n/a
43	CTCF	chr1:196859930-196860117	Hela-S3	cervix:	n/a	n/a
44	CTCF	chr1:196866680-196866830	SK-N-SH_RA	brain:	n/a	n/a
45	CTCF	chr1:196866700-196866850	HRE	kidney:	n/a	n/a
46	CTCF	chr1:196871680-196871830	MCF-7	breast:	n/a	n/a
47	CTCF	chr1:196797120-196797270	HL-60	blood:	n/a	chr1:196797163-196797184 chr1:196797161-196797179 chr1:196797165-196797172 chr1:196797162-196797178
48	CTCF	chr1:196866620-196866770	HBMEC	blood vessel:	n/a	n/a
49	CTCF	chr1:196859978-196860027	HUVEC	blood vessel:	n/a	n/a
50	CTCF	chr1:196879420-196879570	HCM	heart:	n/a	n/a

(count:855 , 50 per page) page: 1 2 3 4 5 6 7 ... 18

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr1:196847859-196847909	GM12891	blood:	n/a
2	chr1:196847859-196847909	GM12891	blood:	n/a
3	chr1:196911888-196911938	GM12892	blood:	n/a
4	chr1:196844364-196844414	CMK	blood:	n/a
5	chr1:196743672-196743722	SK-N-SH_RA	brain:	n/a
6	chr1:196866322-196866372	RPTEC	kidney:	n/a
7	chr1:196855851-196855901	BE2_C	brain:	n/a
8	chr1:196866512-196866562	SKMC	muscle:	n/a
9	chr1:196855851-196855901	HepG2	liver:	n/a
10	chr1:196855851-196855901	AG04449	skin:	fetal
11	chr1:196746875-196746925	AG09319	gingival:	n/a
12	chr1:196746875-196746925	HCF	heart:	n/a
13	chr1:196865686-196865736	GM12892	blood:	n/a
14	chr1:196847859-196847909	GM06990	blood:	n/a
15	chr1:196847182-196847232	SAEC	small airway:	n/a
16	chr1:196866322-196866372	SK-N-SH_RA	brain:	n/a
17	chr1:196795943-196795993	HepG2	liver:	n/a
18	chr1:196787850-196787900	NB4	blood:	n/a
19	chr1:196911888-196911938	MCF10A-Er-Src	breast:	n/a
20	chr1:196866322-196866372	ProgFib	skin:	n/a
21	chr1:196743672-196743722	AoSMC	blood vessel:	n/a
22	chr1:196866322-196866372	HepG2	liver:	n/a
23	chr1:196795943-196795993	HRE	kidney:	n/a
24	chr1:196847182-196847232	NT2-D1	testis:	n/a
25	chr1:196911888-196911938	HCT-116	colon:	n/a
26	chr1:196844364-196844414	SK-N-SH	brain:	n/a
27	chr1:196911888-196911938	CMK	blood:	n/a
28	chr1:196787850-196787900	A549	lung:	n/a
29	chr1:196844364-196844414	T-47D	breast:	n/a
30	chr1:196746875-196746925	HCT-116	colon:	n/a
31	chr1:196795943-196795993	AG04449	skin:	fetal
32	chr1:196855851-196855901	NH-A	brain:	n/a
33	chr1:196902941-196902991	SAEC	small airway:	n/a
34	chr1:196847182-196847232	PFSK-1	brain:	n/a
35	chr1:196866512-196866562	HAEpiC	amniotic membrane:	n/a
36	chr1:196865686-196865736	K562	blood:	n/a
37	chr1:196866322-196866372	ovcar-3	ovarian:	n/a
38	chr1:196787850-196787900	AG09309	skin:	n/a
39	chr1:196795943-196795993	GM12878	blood:	n/a
40	chr1:196865686-196865736	GM12878	blood:	n/a
41	chr1:196844364-196844414	SK-N-SH_RA	brain:	n/a
42	chr1:196902941-196902991	AG04450	lung:	fetal
43	chr1:196865686-196865736	HNPCEpiC	eye:	n/a
44	chr1:196866322-196866372	HAEpiC	amniotic membrane:	n/a
45	chr1:196911888-196911938	H1-hESC	embryonic stem cell:	embryo
46	chr1:196866512-196866562	HUVEC	blood vessel:	n/a
47	chr1:196847182-196847232	SK-N-SH	brain:	n/a
48	chr1:196865686-196865736	H1-hESC	embryonic stem cell:	embryo
49	chr1:196743672-196743722	SAEC	small airway:	n/a
50	chr1:196855851-196855901	SK-N-SH	brain:	n/a

(count:32 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr1:196734362..196735975-chr1:196744220..196746531,2	MCF-7	breast:
2	chr1:196919526..196921876-chr1:197123089..197124599,2	K562	blood:
3	chr1:196821183..196821683-chr13:114578689..114579580,2	NB4	blood:
4	chr1:196711931..196712944-chr1:196796605..196797511,4	MCF-7	breast:
5	chr1:196833036..196835508-chr1:196837217..196839600,2	K562	blood:
6	chr1:196852522..196854884-chr1:197003323..197006250,2	K562	blood:
7	chr1:196700723..196702673-chr1:196877017..196878794,2	K562	blood:
8	chr1:196863909..196866784-chr1:196987706..196990469,2	K562	blood:
9	chr1:196833036..196835508-chr1:196837217..196839600,2	K562	blood:
10	chr1:196692236..196693111-chr1:196859470..196860182,3	MCF-7	breast:
11	chr1:196918167..196920410-chr1:196924098..196925907,2	K562	blood:
12	chr1:196796721..196797658-chr1:196859492..196860452,2	MCF-7	breast:
13	chr1:196286813..196287729-chr1:196859599..196860261,2	MCF-7	breast:
14	chr1:196711011..196712654-chr1:196796494..196798129,2	MCF-7	breast:
15	chr1:196712168..196712942-chr1:196796703..196797590,3	MCF-7	breast:
16	chr1:196706600..196708493-chr1:196711945..196714734,2	K562	blood:
17	chr1:196796721..196797658-chr1:196859492..196860452,2	MCF-7	breast:
18	chr1:196866686..196869291-chr1:196870395..196872004,2	K562	blood:
19	chr1:196712121..196712996-chr1:197035666..197036522,2	MCF-7	breast:
20	chr1:196874466..196877134-chr1:196878401..196880151,2	MCF-7	breast:
21	chr1:196734362..196735975-chr1:196744220..196746531,2	MCF-7	breast:
22	chr1:196874466..196877134-chr1:196878401..196880151,2	MCF-7	breast:
23	chr1:196902868..196904408-chr1:196927162..196928980,2	K562	blood:
24	chr1:196712193..196713017-chr1:197326079..197326750,3	MCF-7	breast:
25	chr1:196738269..196739930-chr1:196742962..196745311,2	MCF-7	breast:
26	chr1:196870703..196871324-chr2:207697433..207698180,2	MCF-7	breast:
27	chr1:196902868..196904408-chr1:196927162..196928980,2	K562	blood:
28	chr1:196711931..196712944-chr1:196796605..196797511,4	MCF-7	breast:
29	chr1:196711011..196712654-chr1:196796494..196798129,2	MCF-7	breast:
30	chr1:196712168..196712942-chr1:196796703..196797590,3	MCF-7	breast:
31	chr1:196866686..196869291-chr1:196870395..196872004,2	K562	blood:
32	chr1:196918167..196920410-chr1:196924098..196925907,2	K562	blood:

(count:31 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-CFHR5-1	chr1:196919982-196920157	NONHSAT008606
2	lnc-CFHR5-1	chr1:196927021-196927203	NONHSAT008609
3	lnc-CFHR5-1	chr1:196912957-196913068	NONHSAT008608
4	lnc-CFHR2-1	chr1:196794607-196795156	NONHSAT008602
5	lnc-CFHR2-1	chr1:196795959-196796135	NONHSAT008600
6	lnc-CFHR5-1	chr1:196918747-196918779	NONHSAT008606
7	lnc-CFHR5-1	chr1:196927021-196927203	NONHSAT008608
8	lnc-CFHR2-1	chr1:196790015-196790332	NONHSAT008601
9	lnc-CFHR2-1	chr1:196794607-196794801	NONHSAT008600
10	lnc-CFHR2-1	chr1:196788952-196789032	NONHSAT008601
11	lnc-CFHR5-1	chr1:196927021-196927203	NONHSAT008605
12	lnc-CFHR5-1	chr1:196912902-196913068	NONHSAT008605
13	lnc-CFHR1-1	chr1:196762447-196762763	NONHSAT008599
14	lnc-CFHR5-1	chr1:196919982-196920069	NONHSAT008607
15	lnc-CFHR5-1	chr1:196918585-196918779	NONHSAT008605
16	lnc-CFHR5-1	chr1:196919982-196920158	NONHSAT008608
17	lnc-CFHR2-1	chr1:196797200-196797225	NONHSAT008600
18	lnc-CFHR5-1	chr1:196912902-196913068	NONHSAT008606
19	lnc-CFHR2-1	chr1:196788893-196789032	NONHSAT008600
20	lnc-F13B-1	chr1:196834519-196834621	NONHSAT008604
21	lnc-CFHR2-1	chr1:196794354-196794801	NONHSAT008603
22	lnc-CFHR5-1	chr1:196920030-196920158	NONHSAT008605
23	lnc-F13B-1	chr1:196833477-196833736	NONHSAT008604
24	lnc-CFHR5-1	chr1:196912947-196913068	NONHSAT008607
25	lnc-CFHR5-1	chr1:196912988-196913068	NONHSAT008609
26	lnc-CFHR2-1	chr1:196795959-196796135	NONHSAT008603
27	lnc-CFHR2-1	chr1:196797280-196797376	NONHSAT008600
28	lnc-CFHR2-1	chr1:196797200-196797297	NONHSAT008603
29	lnc-CFHR5-1	chr1:196918566-196918779	NONHSAT008607
30	lnc-CFHR1-1	chr1:196758890-196759357	NONHSAT008599
31	lnc-CFHR2-1	chr1:196788995-196789032	NONHSAT008602

No data

(count:1 , 50 per page) page: 1

No.	miRNA target gene	miRNA name	Chromosome Location	mirBase accession
1	CFH	hsa-miR-146a-5p	chr1:196716478-196716499

Variant related genes	Relation type
CFHR4	TF binding region
CFHR2	TF binding region
CFHR1	TF binding region
CFHR3	TF binding region
CFHR4	CpG island
CFHR2	CpG island
CFHR1	CpG island
CFHR3	CpG island
ENSG00000143278	chromatin interactions
ENSG00000116785	chromatin interactions

Extended variants
information (count: 5269 )
Associated
traits (count: 92 )

Variant overlapped rSNPs/rCNVs (count:5269 , 50 per page) page: 1 2 3 4 5 6 7 ... 106

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs385892	chr1:196710790-196710791	Weak transcription Strong transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
2	rs528657593	chr1:196710800-196710801	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs181075256	chr1:196710814-196710815	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs16840522	chr1:196710916-196710917	Weak transcription Strong transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
5	rs385543	chr1:196710917-196710918	Weak transcription Strong transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
6	rs184233638	chr1:196710919-196710920	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs113158961	chr1:196710959-196710960	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs369121227	chr1:196710975-196710976	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs56191748	chr1:196710976-196710977	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs190778135	chr1:196710998-196710999	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs17575212	chr1:196711038-196711039	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs201816520	chr1:196711052-196711053	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs111924608	chr1:196711057-196711058	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs534399	chr1:196711067-196711068	Weak transcription Strong transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
15	rs201380066	chr1:196711073-196711074	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs11539862	chr1:196711076-196711077	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs147864267	chr1:196711093-196711094	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs34362004	chr1:196711098-196711099	Weak transcription Strong transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
19	rs1040597	chr1:196711099-196711100	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs199585511	chr1:196711110-196711111	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs373385518	chr1:196711127-196711128	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs34594237	chr1:196711150-196711151	Weak transcription Strong transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
23	rs377051240	chr1:196711161-196711162	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs148480839	chr1:196711166-196711167	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs370384708	chr1:196711167-196711168	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs111658900	chr1:196711182-196711183	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs111415585	chr1:196711183-196711184	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs374729595	chr1:196711185-196711186	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs142718541	chr1:196711189-196711190	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs533218029	chr1:196711213-196711214	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs368026369	chr1:196711214-196711215	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs573680704	chr1:196711243-196711244	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs538497435	chr1:196711248-196711249	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs556854784	chr1:196711257-196711258	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs151243611	chr1:196711280-196711281	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs545611835	chr1:196711333-196711334	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs551306452	chr1:196711338-196711339	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs560537602	chr1:196711347-196711348	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs200292510	chr1:196711348-196711349	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs202063301	chr1:196711351-196711352	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs572179467	chr1:196711358-196711359	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs537793604	chr1:196711366-196711367	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs117434964	chr1:196711380-196711381	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs560906905	chr1:196711393-196711394	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs531637386	chr1:196711420-196711421	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs140457772	chr1:196711438-196711439	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs35496304	chr1:196711460-196711461	Strong transcription Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
48	rs376189313	chr1:196711463-196711464	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs532969108	chr1:196711477-196711478	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs201254178	chr1:196711480-196711481	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:92)

Disease	PMID	Source
Breast cancer	17603634	CNVD
Esophageal squamous carcinoma	21637470	CNVD
HIV/AIDS	22032296	CNVD
Schizophrenia	19415332	CNVD
Autism	22495311	CNVD
Liposarcoma	21253554	CNVD
Burkitt''s lymphoma	18698080	CNVD
Melanoma	18172304	CNVD
Rett syndrome	21593744	CNVD
Cancer	20164919	CNVD
Medulloblastoma	21979893	CNVD
Acute lymphoblastic leukemia	17443227	CNVD
Wilms tumour	21544195	CNVD
Breast cancer	17133270	CNVD
Carcinoma ex pleomorphic adenoma	18828159	CNVD
Non-small cell lung cancer	21044232	CNVD
Cervical cancer	21063398	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	20632083	CNVD
Endometrial cancer	22040021	CNVD
Ewing''s sarcoma	21437220	CNVD
Gastrointestinal stromal cancer	20470368	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	21080181	CNVD
Hepatocellular carcinoma	22174799	CNVD
Medulloblastoma	21292688	CNVD
Phyllodes tumor	17334353	CNVD
Breast cancer	21264507	CNVD
Multiple myeloma	21628407	CNVD
Cancer	16751803	CNVD
Prostate cancer	16705090	CNVD
Neuroblastoma	19435921	CNVD
Breast cancer	17850661	CNVD
Breast cancer	16461572	CNVD
Intracranial tumor	16823260	CNVD
Medulloblastoma	18056178	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Primary mediastinal b-cell lymphoma	17728785	CNVD
Colorectal cancer	16272173	CNVD
Acute lymphoblastic leukemia	21098271	CNVD
Neuroblastoma	21899760	CNVD
Ovarian neoplasms	16753589	CNVD
Glioblastoma multiforme	17002787	CNVD
Breast cancer	21858162	CNVD
Non-small cell lung cancer	21385341	CNVD
Acute lymphoblastic leukemia	21980252	CNVD
Breast cancer	16608533	CNVD
Ewing''s sarcoma	22429812	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Hepatocellular carcinoma	18803288	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Breast cancer	17001317	CNVD
Acute myeloid leukemia	21251322	CNVD
Multiple myeloma	17550852	CNVD
Prostate cancer	18632612	CNVD
Acute myeloid leukemia	20729466	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Testicular germ cell tumor	18059402	CNVD
Ependymoma	18628472	CNVD
Leukemia	18628472	CNVD
Neuroblastoma	18923191	CNVD
Acute lymphoblastic leukemia	19100363	CNVD
Breast cancer	21509527	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Lung cancer	18438408	CNVD
Metanephric adenoma	20802469	CNVD
Breast cancer	21611746	CNVD
primary effusion lymphomas	17116491	CNVD
Breast cancer	17393978	CNVD
Hepatocellular carcinoma	16750200	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Non-small cell lung cancer	19010865	CNVD
Mental retardation	17847001	CNVD
Basal cell lymphoma	17170743	CNVD
Follicular lymphoma	17170743	CNVD
Trisomy 5 syndrome	21098271	CNVD
Glioblastoma multiforme	22286061	CNVD
Urothelial carcinoma	21177765	CNVD
Myelofibrosis	22110671	CNVD
Breast cancer	16272173	CNVD
Mental retardation	21062444	CNVD
Liver carcinoma	19366792	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Chordoma	18071362	CNVD
small cell lung cancer	20016488	CNVD
Neuroblastoma	20406844	CNVD
early-passage human iPS cells	21368824	CNVD
Non-syndromic sensorineural hearing loss	21293372	CNVD
Pancreatic cancer	17952125	CNVD
Breast cancer	22522925	CNVD

Chromatin state (count:309 , 50 per page) page: 1 2 3 4 5 6 7

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:196691200-196718400	Weak transcription	Skeletal Muscle Male	skeletal muscle
2	chr1:196706000-196711400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr1:196707400-196722400	Weak transcription	Psoas Muscle	Psoas
4	chr1:196707800-196712600	Weak transcription	NH-A	brain
5	chr1:196708000-196719800	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr1:196708400-196711000	Weak transcription	Osteobl	bone
7	chr1:196708400-196711400	Strong transcription	Fetal Muscle Leg	muscle
8	chr1:196708400-196711600	Strong transcription	Ovary	ovary
9	chr1:196708400-196712000	Weak transcription	Small Intestine	intestine
10	chr1:196708400-196712800	Weak transcription	Fetal Stomach	stomach
11	chr1:196708400-196717200	Strong transcription	Liver	Liver
12	chr1:196708800-196712600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr1:196708800-196718200	Weak transcription	Adipose Nuclei	Adipose
14	chr1:196709000-196712000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
15	chr1:196709000-196712600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr1:196709200-196712600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr1:196709200-196712600	Weak transcription	Muscle Satellite Cultured Cells	--
18	chr1:196709400-196711200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr1:196709400-196716800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr1:196709400-196716800	Weak transcription	Fetal Muscle Trunk	muscle
21	chr1:196709400-196718000	Weak transcription	Duodenum Mucosa	Duodenum
22	chr1:196710200-196711200	Strong transcription	Dnd41	blood
23	chr1:196710200-196711800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr1:196710200-196712000	Weak transcription	K562	blood
25	chr1:196710600-196718200	Weak transcription	HSMM	muscle
26	chr1:196711200-196711600	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr1:196711200-196714600	Weak transcription	Dnd41	blood
28	chr1:196711400-196717800	Weak transcription	Fetal Muscle Leg	muscle
29	chr1:196711400-196719800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr1:196711600-196717200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr1:196711600-196718000	Weak transcription	Ovary	ovary
32	chr1:196711800-196713400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
33	chr1:196712600-196712800	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
34	chr1:196712600-196712800	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr1:196712600-196712800	Enhancers	Muscle Satellite Cultured Cells	--
36	chr1:196712800-196718400	Weak transcription	Muscle Satellite Cultured Cells	--
37	chr1:196714600-196717000	Strong transcription	Dnd41	blood
38	chr1:196717000-196719800	Weak transcription	Dnd41	blood
39	chr1:196717200-196718800	Weak transcription	Liver	Liver
40	chr1:196734800-196735000	Enhancers	Liver	Liver
41	chr1:196735000-196743200	Weak transcription	Liver	Liver
42	chr1:196743200-196743600	Flanking Active TSS	Liver	Liver
43	chr1:196743600-196748600	Active TSS	Liver	Liver
44	chr1:196748600-196749000	Weak transcription	Liver	Liver
45	chr1:196749000-196749200	ZNF genes & repeats	Pancreas	Pancrea
46	chr1:196749000-196749800	ZNF genes & repeats	Liver	Liver
47	chr1:196749800-196755800	Weak transcription	Liver	Liver
48	chr1:196755000-196756200	Active TSS	ES-I3 Cell Line	embryonic stem cell
49	chr1:196755200-196755800	Active TSS	HUES64 Cell Line	embryonic stem cell
50	chr1:196755200-196756400	Active TSS	HUES48 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links