Variant report

Variant	nsv869161
Chromosome Location	chrX:155029751-155232907
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:956)
CpG islands
(count:0)
Chromatin interactive
region (count:0)
LncRNA
region (count:6)
Mature miRNA
region (count: 0)
miRNA target
sites (count:3)

(count:956 , 50 per page) page: 1 2 3 4 5 6 7 ... 20

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ATF2	chrX:155106295-155106691	GM12878	blood:	n/a	n/a
2	ATF2	chrX:155110700-155111118	GM12878	blood:	n/a	n/a
3	ATF3	chrX:155049878-155050047	K562	blood:	n/a	n/a
4	ATF3	chrX:155049846-155050087	K562	blood:	n/a	n/a
5	ATF3	chrX:155110793-155111031	K562	blood:	n/a	n/a
6	ATF3	chrX:155117821-155118206	K562	blood:	n/a	n/a
7	ATF3	chrX:155117896-155118116	K562	blood:	n/a	n/a
8	ATF3	chrX:155049810-155050080	H1-hESC	embryonic stem cell:	n/a	n/a
9	BCLAF1	chrX:155110613-155111149	GM12878	blood:	n/a	chrX:155111130-155111143
10	BCLAF1	chrX:155110620-155111034	GM12878	blood:	n/a	n/a
11	CBX3	chrX:155193867-155194177	K562	blood:	n/a	n/a
12	CBX3	chrX:155157333-155157707	K562	blood:	n/a	n/a
13	CBX3	chrX:155117729-155118210	HCT-116	colon:	n/a	n/a
14	CBX3	chrX:155213383-155213699	K562	blood:	n/a	n/a
15	CBX3	chrX:155213419-155213617	K562	blood:	n/a	n/a
16	CBX3	chrX:155097474-155097882	K562	blood:	n/a	n/a
17	CBX3	chrX:155227022-155227398	K562	blood:	n/a	n/a
18	CBX3	chrX:155117763-155118332	HCT-116	colon:	n/a	n/a
19	CBX3	chrX:155097539-155097798	K562	blood:	n/a	n/a
20	CBX3	chrX:155197896-155198446	K562	blood:	n/a	n/a
21	CBX3	chrX:155110478-155111375	K562	blood:	n/a	n/a
22	CBX3	chrX:155193995-155194178	K562	blood:	n/a	n/a
23	CBX3	chrX:155232090-155232579	K562	blood:	n/a	n/a
24	CEBPB	chrX:155049796-155050155	MCF-7	breast:	n/a	n/a
25	CEBPB	chrX:155223148-155223493	HepG2	liver:	n/a	n/a
26	CEBPB	chrX:155223210-155223405	HepG2	liver:	n/a	n/a
27	CEBPD	chrX:155231170-155231610	K562	blood:	n/a	n/a
28	CEBPD	chrX:155110955-155111174	HepG2	liver:	n/a	n/a
29	CEBPD	chrX:155231230-155231664	K562	blood:	n/a	n/a
30	CEBPD	chrX:155227119-155227489	K562	blood:	n/a	n/a
31	CREB1	chrX:155110706-155111718	H1-hESC	embryonic stem cell:	n/a	chrX:155111461-155111474
32	CREB1	chrX:155110712-155111544	HepG2	liver:	n/a	chrX:155111461-155111474
33	CREB1	chrX:155110647-155111682	GM12878	blood:	n/a	chrX:155111461-155111474
34	CREB1	chrX:155227064-155227555	GM12878	blood:	n/a	n/a
35	CREB1	chrX:155227003-155227569	K562	blood:	n/a	n/a
36	CREB1	chrX:155110725-155111683	H1-hESC	embryonic stem cell:	n/a	chrX:155111461-155111474
37	CREB1	chrX:155110556-155111675	K562	blood:	n/a	chrX:155111461-155111474
38	CREB1	chrX:155110661-155111229	A549	lung:	n/a	n/a
39	CREB1	chrX:155110616-155111646	K562	blood:	n/a	chrX:155111461-155111474
40	CREB1	chrX:155110727-155111073	A549	lung:	n/a	n/a
41	CREB1	chrX:155110547-155111661	HepG2	liver:	n/a	chrX:155111461-155111474
42	CREB1	chrX:155102863-155103160	H1-hESC	embryonic stem cell:	n/a	n/a
43	CREB1	chrX:155102854-155103248	K562	blood:	n/a	n/a
44	CREB1	chrX:155110728-155111031	ECC-1	luminal epithelium:	n/a	n/a
45	CTCF	chrX:155087303-155087558	SK-N-SH_RA	brain:	n/a	n/a
46	CTCF	chrX:155052870-155052934	GM10248	blood:	n/a	n/a
47	CTCF	chrX:155049885-155050095	NHEK	skin:	n/a	n/a
48	CTCF	chrX:155087368-155087565	Medullo	brain:	n/a	n/a
49	CTCF	chrX:155232737-155232842	LNCaP	prostate:	n/a	chrX:155232804-155232822 chrX:155232806-155232827
50	CTCF	chrX:155049886-155049890	Lung_OC	lung:	n/a	n/a

No data

(count:6 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-WASH6P-1	chrX:155232571-155232635	NONHSAT139250
2	lnc-TMLHE-3	chrX:155058248-155059239	NONHSAT139246
3	lnc-VAMP7-2	chrX:155105299-155105548	NONHSAT139247
4	lnc-WASH6P-1	chrX:155227399-155227452	NONHSAT139250
5	lnc-WASH6P-1	chrX:155230995-155231173	NONHSAT139250
6	lnc-TMLHE-4	chrX:155208657-155208990	NONHSAT139249

No data

(count:3 , 50 per page) page: 1

No.	miRNA target gene	miRNA name	Chromosome Location
1	VAMP7	hsa-miR-26b-5p	chrX:155172667-155172687
2	VAMP7	hsa-miR-1	chrX:155173195-155173215
3	VAMP7	hsa-miR-93-5p	chrX:155172890-155172912

Variant related genes	Relation type
AMDP1	TF binding region
IL9R	TF binding region
TCEB1P24	TF binding region
VAMP7	TF binding region
TRPC6P	TF binding region
ENSG00000270726	TF binding region
DPH3P2	TF binding region

Extended variants
information (count: 2139 )
Associated
traits (count: 2 )

Variant overlapped rSNPs/rCNVs (count:2139 , 50 per page) page: 1 2 3 4 5 6 7 ... 43

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs375912601	chrX:155049020-155049021	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
2	rs187790196	chrX:155049032-155049033	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
3	rs5983786	chrX:155049043-155049044	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
4	rs192777294	chrX:155049091-155049092	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
5	rs184953170	chrX:155049176-155049177	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
6	rs372145692	chrX:155049181-155049182	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
7	rs189464941	chrX:155049200-155049201	Enhancers ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
8	rs1764585	chrX:155049269-155049270	Enhancers ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
9	rs184381218	chrX:155049294-155049295	Enhancers ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
10	rs189620633	chrX:155049339-155049340	Enhancers ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
11	rs56223320	chrX:155049354-155049355	Enhancers ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
12	rs151025432	chrX:155049367-155049368	Enhancers ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
13	rs375424499	chrX:155049377-155049378	Enhancers ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
14	rs377048488	chrX:155049470-155049471	Enhancers ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
15	rs141218780	chrX:155049490-155049491	Enhancers ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
16	rs34709500	chrX:155049543-155049544	Enhancers ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
17	rs369999976	chrX:155049552-155049553	Enhancers ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
18	rs181914316	chrX:155049645-155049646	Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs528623883	chrX:155049915-155049916	Enhancers Bivalent Enhancer	n/a	n/a	Overlapped CNVs	n/a
20	rs185421419	chrX:155049982-155049983	Enhancers Bivalent Enhancer	n/a	n/a	Overlapped CNVs	n/a
21	rs373292827	chrX:155049988-155049989	Enhancers Bivalent Enhancer	n/a	n/a	Overlapped CNVs	n/a
22	rs189389380	chrX:155049992-155049993	Enhancers Bivalent Enhancer	n/a	n/a	Overlapped CNVs	n/a
23	rs146874419	chrX:155050051-155050052	Enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs35023725	chrX:155050254-155050255	Enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs367906064	chrX:155050255-155050256	Enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs77519528	chrX:155050260-155050261	Enhancers	n/a	n/a	Overlapped CNVs	n/a
27	rs377499323	chrX:155050261-155050262	Enhancers	n/a	n/a	Overlapped CNVs	n/a
28	rs180733024	chrX:155050263-155050264	Enhancers	n/a	n/a	Overlapped CNVs	n/a
29	rs186646043	chrX:155050271-155050272	Enhancers	n/a	n/a	Overlapped CNVs	n/a
30	rs5983787	chrX:155050280-155050281	Enhancers	n/a	n/a	Overlapped CNVs	n/a
31	rs190981629	chrX:155050301-155050302	Enhancers	n/a	n/a	Overlapped CNVs	n/a
32	rs569247737	chrX:155050367-155050368	Enhancers	n/a	n/a	Overlapped CNVs	n/a
33	rs551303272	chrX:155050370-155050371	Enhancers	n/a	n/a	Overlapped CNVs	n/a
34	rs374899627	chrX:155050378-155050379	Enhancers	n/a	n/a	Overlapped CNVs	n/a
35	rs113848733	chrX:155071207-155071208	Enhancers	n/a	n/a	Overlapped CNVs	n/a
36	rs57441404	chrX:155071219-155071220	Enhancers	n/a	n/a	Overlapped CNVs	n/a
37	rs191814010	chrX:155071266-155071267	Enhancers	n/a	n/a	Overlapped CNVs	n/a
38	rs140505680	chrX:155071326-155071327	Enhancers	n/a	n/a	Overlapped CNVs	n/a
39	rs6567777	chrX:155071332-155071333	Enhancers	n/a	n/a	Overlapped CNVs	n/a
40	rs5983796	chrX:155071400-155071401	Enhancers	n/a	n/a	Overlapped CNVs	n/a
41	rs5983797	chrX:155071456-155071457	Enhancers	n/a	n/a	Overlapped CNVs	n/a
42	rs149764616	chrX:155071532-155071533	Enhancers	n/a	n/a	Overlapped CNVs	n/a
43	rs368552308	chrX:155071556-155071557	Enhancers	n/a	n/a	Overlapped CNVs	n/a
44	rs145717724	chrX:155071559-155071560	Enhancers	n/a	n/a	Overlapped CNVs	n/a
45	rs369239245	chrX:155071644-155071645	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs373667046	chrX:155071650-155071651	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs376683453	chrX:155071666-155071667	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs184941069	chrX:155071692-155071693	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs187862333	chrX:155071890-155071891	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs4617326	chrX:155071958-155071959	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:2)

Disease	PMID	Source
Olfactory neuroblastoma	18408657	CNVD
Hereditary coagulopathy	21993689	CNVD

Chromatin state (count:1820 , 50 per page) page: 1 2 3 4 5 6 7 ... 37

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:155049000-155049600	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
2	chrX:155049200-155049800	Enhancers	HUES6 Cell Line	embryonic stem cell
3	chrX:155049200-155050000	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chrX:155049200-155050200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chrX:155049400-155049800	Enhancers	iPS-15b Cell Line	embryonic stem cell
6	chrX:155049400-155050400	Enhancers	HMEC	breast
7	chrX:155049800-155050000	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
8	chrX:155049800-155050400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chrX:155071200-155071600	Enhancers	Monocytes-CD14+_RO01746	blood
10	chrX:155071200-155073000	Enhancers	Primary monocytes fromperipheralblood	blood
11	chrX:155071600-155072600	Weak transcription	Monocytes-CD14+_RO01746	blood
12	chrX:155072600-155072800	Enhancers	Monocytes-CD14+_RO01746	blood
13	chrX:155072600-155073000	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
14	chrX:155074800-155075200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chrX:155103800-155104000	Bivalent Enhancer	ES-WA7 Cell Line	embryonic stem cell
16	chrX:155103800-155105400	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chrX:155104000-155104200	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
18	chrX:155104000-155104200	Bivalent Enhancer	Primary T helper 17 cells PMA-I stimulated	--
19	chrX:155104000-155104200	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chrX:155104000-155104200	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
21	chrX:155104000-155104200	Active TSS	Brain Hippocampus Middle	brain
22	chrX:155104000-155104600	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
23	chrX:155104000-155104600	Active TSS	Brain Anterior Caudate	brain
24	chrX:155104000-155104600	Active TSS	Osteobl	bone
25	chrX:155104000-155104800	ZNF genes & repeats	Foreskin Fibroblast Primary Cells skin01	Skin
26	chrX:155104000-155104800	Active TSS	Ovary	ovary
27	chrX:155104200-155104400	Flanking Bivalent TSS/Enh	Primary monocytes fromperipheralblood	blood
28	chrX:155104200-155104400	Bivalent/Poised TSS	Duodenum Smooth Muscle	Duodenum
29	chrX:155104200-155104400	Bivalent Enhancer	Fetal Muscle Leg	muscle
30	chrX:155104200-155104600	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
31	chrX:155104200-155104600	Bivalent/Poised TSS	Cortex derived primary cultured neurospheres	brain
32	chrX:155104200-155104600	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
33	chrX:155104200-155104600	Bivalent/Poised TSS	Brain Hippocampus Middle	brain
34	chrX:155104200-155104600	Bivalent Enhancer	Lung	lung
35	chrX:155104200-155104600	Flanking Active TSS	Pancreas	Pancrea
36	chrX:155104200-155104600	Active TSS	Right Atrium	heart
37	chrX:155104200-155104600	Active TSS	HMEC	breast
38	chrX:155104200-155104600	Active TSS	HSMMtube	muscle
39	chrX:155104200-155104800	Flanking Bivalent TSS/Enh	IMR90 fetal lung fibroblasts Cell Line	lung
40	chrX:155104200-155104800	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
41	chrX:155104200-155104800	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
42	chrX:155104200-155104800	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
43	chrX:155104200-155104800	Bivalent/Poised TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
44	chrX:155104200-155104800	Active TSS	Muscle Satellite Cultured Cells	--
45	chrX:155104200-155104800	Bivalent/Poised TSS	Brain Angular Gyrus	brain
46	chrX:155104200-155104800	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
47	chrX:155104200-155104800	Bivalent/Poised TSS	A549	lung
48	chrX:155104200-155104800	Active TSS	HepG2	liver
49	chrX:155104200-155104800	Active TSS	NHDF-Ad	bronchial
50	chrX:155104200-155104800	Active TSS	NHLF	lung

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