Variant report

Variant	nsv869965
Chromosome Location	chr15:34650167-34658061
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr15:34650075-34650188	K562	blood:	n/a	n/a
2	ARID3A	chr15:34650682-34650948	K562	blood:	n/a	n/a
3	BHLHE40	chr15:34657488-34657770	GM12878	blood:	n/a	n/a
4	CEBPD	chr15:34649884-34650391	K562	blood:	n/a	n/a
5	CHD2	chr15:34657656-34657990	GM12878	blood:	n/a	n/a
6	CHD2	chr15:34657702-34657867	H1-hESC	embryonic stem cell:	n/a	n/a
7	CTCF	chr15:34652661-34652747	LNCaP	prostate:	n/a	chr15:34652700-34652721 chr15:34652698-34652716 chr15:34652701-34652714
8	CTCF	chr15:34650720-34650870	HCPEpiC	choroid plexus:	n/a	chr15:34650728-34650736 chr15:34650774-34650783 chr15:34650730-34650743
9	CTCF	chr15:34650680-34650830	NHEK	skin:	n/a	chr15:34650728-34650736 chr15:34650774-34650783 chr15:34650730-34650743
10	CTCF	chr15:34650660-34650810	BJ	skin:	n/a	chr15:34650728-34650736 chr15:34650774-34650783 chr15:34650730-34650743
11	CTCF	chr15:34650680-34650830	HepG2	liver:	n/a	chr15:34650728-34650736 chr15:34650774-34650783 chr15:34650730-34650743
12	CTCF	chr15:34650700-34650850	SK-N-SH_RA	brain:	n/a	chr15:34650728-34650736 chr15:34650774-34650783 chr15:34650730-34650743
13	CTCF	chr15:34650700-34650850	HPF	lung:	n/a	chr15:34650728-34650736 chr15:34650774-34650783 chr15:34650730-34650743
14	CTCF	chr15:34650667-34650831	MCF-7	breast:	n/a	chr15:34650728-34650736 chr15:34650774-34650783 chr15:34650730-34650743
15	CTCF	chr15:34650641-34650874	MCF-7	breast:	n/a	chr15:34650728-34650736 chr15:34650774-34650783 chr15:34650730-34650743
16	CTCF	chr15:34652474-34652940	MCF-7	breast:	n/a	chr15:34652700-34652721 chr15:34652698-34652716 chr15:34652701-34652714
17	CTCF	chr15:34650700-34650850	HCM	heart:	n/a	chr15:34650728-34650736 chr15:34650774-34650783 chr15:34650730-34650743
18	CTCF	chr15:34650736-34650845	HUVEC	blood vessel:	n/a	chr15:34650774-34650783
19	CTCF	chr15:34650720-34650870	Caco-2	colon:	n/a	chr15:34650728-34650736 chr15:34650774-34650783 chr15:34650730-34650743
20	CTCF	chr15:34650654-34650913	IMR90	lung:	n/a	chr15:34650728-34650736 chr15:34650774-34650783 chr15:34650730-34650743
21	CTCF	chr15:34650640-34650790	GM12869	blood:	n/a	chr15:34650728-34650736 chr15:34650774-34650783 chr15:34650730-34650743
22	CTCF	chr15:34650720-34650870	GM06990	blood:	n/a	chr15:34650728-34650736 chr15:34650774-34650783 chr15:34650730-34650743
23	CTCF	chr15:34650536-34650898	K562	blood:	n/a	chr15:34650728-34650736 chr15:34650774-34650783 chr15:34650730-34650743
24	CTCF	chr15:34650680-34650830	K562	blood:	n/a	chr15:34650728-34650736 chr15:34650774-34650783 chr15:34650730-34650743
25	CTCF	chr15:34650671-34650788	HepG2	liver:	n/a	chr15:34650728-34650736 chr15:34650774-34650783 chr15:34650730-34650743
26	CTCF	chr15:34650666-34650866	LNCaP	prostate:	n/a	chr15:34650728-34650736 chr15:34650774-34650783 chr15:34650730-34650743
27	CTCF	chr15:34650780-34650930	WI-38	lung:	n/a	n/a
28	CTCF	chr15:34652712-34652725	K562	blood:	n/a	n/a
29	CTCF	chr15:34650620-34650770	A549	lung:	n/a	chr15:34650728-34650736 chr15:34650730-34650743
30	CTCF	chr15:34650667-34650815	MCF-7	breast:	n/a	chr15:34650728-34650736 chr15:34650774-34650783 chr15:34650730-34650743
31	CTCF	chr15:34650720-34650870	HVMF	connective:	n/a	chr15:34650728-34650736 chr15:34650774-34650783 chr15:34650730-34650743
32	CTCF	chr15:34650676-34650854	Hela-S3	cervix:	n/a	chr15:34650728-34650736 chr15:34650774-34650783 chr15:34650730-34650743
33	CTCF	chr15:34650680-34650830	SAEC	small airway:	n/a	chr15:34650728-34650736 chr15:34650774-34650783 chr15:34650730-34650743
34	CTCF	chr15:34650640-34650790	WERI-Rb-1	eye:	n/a	chr15:34650728-34650736 chr15:34650774-34650783 chr15:34650730-34650743
35	CTCF	chr15:34650680-34650830	HMEC	breast:	n/a	chr15:34650728-34650736 chr15:34650774-34650783 chr15:34650730-34650743
36	CTCF	chr15:34650700-34650850	HA-sp	spinal cord:	n/a	chr15:34650728-34650736 chr15:34650774-34650783 chr15:34650730-34650743
37	CTCF	chr15:34650718-34650801	Fibrobl	skin:	n/a	chr15:34650728-34650736 chr15:34650774-34650783 chr15:34650730-34650743
38	CTCF	chr15:34654632-34654663	GM13977	blood:	n/a	n/a
39	CTCF	chr15:34650720-34650870	GM12872	blood:	n/a	chr15:34650728-34650736 chr15:34650774-34650783 chr15:34650730-34650743
40	CTCF	chr15:34652620-34652770	Hela-S3	cervix:	n/a	chr15:34652700-34652721 chr15:34652698-34652716 chr15:34652701-34652714
41	CTCF	chr15:34652620-34652770	WERI-Rb-1	eye:	n/a	chr15:34652700-34652721 chr15:34652698-34652716 chr15:34652701-34652714
42	CTCF	chr15:34650780-34650930	HRE	kidney:	n/a	n/a
43	CTCF	chr15:34650700-34650850	Hela-S3	cervix:	n/a	chr15:34650728-34650736 chr15:34650774-34650783 chr15:34650730-34650743
44	CTCF	chr15:34650720-34650870	HFF-Myc	foreskin:	n/a	chr15:34650728-34650736 chr15:34650774-34650783 chr15:34650730-34650743
45	CTCF	chr15:34650735-34650829	Pancreas_OC	pancreas:	n/a	chr15:34650774-34650783
46	CTCF	chr15:34651640-34651790	GM12866	blood:	n/a	n/a
47	CTCF	chr15:34650700-34650850	GM12875	blood:	n/a	chr15:34650728-34650736 chr15:34650774-34650783 chr15:34650730-34650743
48	CTCF	chr15:34650638-34650817	A549	lung:	n/a	chr15:34650728-34650736 chr15:34650774-34650783 chr15:34650730-34650743
49	CTCF	chr15:34654333-34654544	H1-hESC	embryonic stem cell:	n/a	n/a
50	CTCF	chr15:34650700-34650850	GM12866	blood:	n/a	chr15:34650728-34650736 chr15:34650774-34650783 chr15:34650730-34650743

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr15:34657364-34657414	SK-N-SH_RA	brain:	n/a
2	chr15:34657364-34657414	BJ	skin:	n/a
3	chr15:34657364-34657414	MCF-7	breast:	n/a
4	chr15:34657364-34657414	MCF10A-Er-Src	breast:	n/a
5	chr15:34657364-34657414	HL-60	blood:	n/a
6	chr15:34657364-34657414	HepG2	liver:	n/a
7	chr15:34657364-34657414	U87	brain:	n/a
8	chr15:34657364-34657414	ProgFib	skin:	n/a
9	chr15:34657364-34657414	PFSK-1	brain:	n/a
10	chr15:34657364-34657414	Caco-2	colon:	n/a
11	chr15:34657364-34657414	CMK	blood:	n/a
12	chr15:34657364-34657414	HCF	heart:	n/a
13	chr15:34657364-34657414	AG10803	skin:	n/a
14	chr15:34657364-34657414	GM06990	blood:	n/a
15	chr15:34657364-34657414	HNPCEpiC	eye:	n/a
16	chr15:34657364-34657414	ovcar-3	ovarian:	n/a
17	chr15:34657364-34657414	HRPEpiC	eye:	n/a
18	chr15:34657364-34657414	K562	blood:	n/a
19	chr15:34657364-34657414	AG09319	gingival:	n/a
20	chr15:34657364-34657414	GM19239	blood:	n/a
21	chr15:34657364-34657414	SK-N-MC	brain:	n/a
22	chr15:34657364-34657414	ECC-1	luminal epithelium:	n/a
23	chr15:34657364-34657414	NB4	blood:	n/a
24	chr15:34657364-34657414	NHDF-neo	bronchial:	n/a
25	chr15:34657364-34657414	SK-N-SH	brain:	n/a
26	chr15:34657364-34657414	NHBE	bronchial:	n/a
27	chr15:34657364-34657414	HPAEpiC	pulmonary alveolar:	n/a
28	chr15:34657364-34657414	PANC-1	pancreas:	n/a
29	chr15:34657364-34657414	HCM	heart:	n/a
30	chr15:34657364-34657414	HRCEpiC	kidney:	n/a
31	chr15:34657364-34657414	AG04449	skin:	fetal
32	chr15:34657364-34657414	Hepatocyte	liver:	n/a
33	chr15:34657364-34657414	GM12878	blood:	n/a
34	chr15:34657364-34657414	PrEC	prostate:	n/a
35	chr15:34657364-34657414	AG04450	lung:	fetal
36	chr15:34657364-34657414	HCPEpiC	choroid plexus:	n/a
37	chr15:34657364-34657414	T-47D	breast:	n/a
38	chr15:34657364-34657414	IMR90	lung:	fetal
39	chr15:34657364-34657414	LNCaP	prostate:	n/a
40	chr15:34657364-34657414	Hela-S3	cervix:	n/a
41	chr15:34657364-34657414	AoSMC	blood vessel:	n/a
42	chr15:34657364-34657414	AG09309	skin:	n/a
43	chr15:34657364-34657414	NH-A	brain:	n/a
44	chr15:34657364-34657414	HUVEC	blood vessel:	n/a
45	chr15:34657364-34657414	NT2-D1	testis:	n/a
46	chr15:34657364-34657414	HIPEpiC	eye:	n/a
47	chr15:34657364-34657414	RPTEC	kidney:	n/a
48	chr15:34657364-34657414	HEEpiC	esophagus:	n/a
49	chr15:34657364-34657414	HMEC	breast:	n/a
50	chr15:34657364-34657414	BE2_C	brain:	n/a

No.	Distal block	Cell Line	Cell type
1	chr15:34469294..34472119-chr15:34650020..34652509,2	K562	blood:
2	chr15:34635280..34637526-chr15:34658001..34660457,2	K562	blood:
3	chr15:34635057..34636788-chr15:34655744..34657443,2	MCF-7	breast:
4	chr15:34634087..34636610-chr15:34652468..34654209,2	MCF-7	breast:
5	chr15:34632759..34637829-chr15:34654252..34657716,5	K562	blood:
6	chr15:34636826..34639011-chr15:34652309..34655135,2	K562	blood:
7	chr15:34392506..34394195-chr15:34653164..34655913,2	MCF-7	breast:
8	chr15:34637138..34639879-chr15:34649116..34651310,2	K562	blood:
9	chr15:34642775..34644501-chr15:34648793..34650495,2	K562	blood:
10	chr15:34654804..34656714-chr15:34658910..34661703,3	K562	blood:
11	chr15:34632008..34636763-chr15:34655757..34660926,8	K562	blood:
12	chr15:34626796..34628377-chr15:34649112..34652053,2	MCF-7	breast:
13	chr15:34650334..34650906-chr15:34879916..34880747,2	MCF-7	breast:
14	chr15:34642499..34645200-chr15:34648396..34650653,3	K562	blood:
15	chr15:34646986..34649043-chr15:34651074..34652808,2	MCF-7	breast:
16	chr15:34655711..34662054-chr15:34662110..34667087,9	K562	blood:
17	chr15:34637952..34639730-chr15:34647346..34650256,2	MCF-7	breast:
18	chr15:34634560..34637281-chr15:34649248..34651493,2	MCF-7	breast:
19	chr15:34633629..34635584-chr15:34657779..34659599,2	MCF-7	breast:
20	chr15:34629384..34632183-chr15:34656418..34659243,3	MCF-7	breast:

Variant related genes	Relation type
LPCAT4	TF binding region
LPCAT4	CpG island
ENSG00000266205	chromatin interactions
ENSG00000215252	chromatin interactions
ENSG00000259904	chromatin interactions
ENSG00000182117	chromatin interactions
ENSG00000184507	chromatin interactions
ENSG00000134153	chromatin interactions
ENSG00000140199	chromatin interactions
ENSG00000176454	chromatin interactions

Extended variants
information (count: 340 )
Associated
traits (count: 67 )

Variant overlapped rSNPs/rCNVs (count:340 , 50 per page) page: 1 2 3 4 5 6 7

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs372035147	chr15:34650195-34650196	Weak transcription Strong transcription Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
2	rs577175718	chr15:34650243-34650244	Weak transcription Strong transcription Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
3	rs570702297	chr15:34650254-34650255	Weak transcription Strong transcription Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
4	rs180824619	chr15:34650256-34650257	Weak transcription Strong transcription Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
5	rs186539430	chr15:34650288-34650289	Weak transcription Strong transcription Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
6	rs534822930	chr15:34650340-34650341	Weak transcription Strong transcription Enhancers	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
7	rs190940817	chr15:34650371-34650372	Weak transcription Strong transcription Enhancers	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
8	rs549144608	chr15:34650442-34650443	Weak transcription Strong transcription Enhancers	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
9	rs76074603	chr15:34650476-34650477	Weak transcription Strong transcription Enhancers	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
10	rs147885815	chr15:34650562-34650563	Weak transcription Strong transcription Enhancers	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
11	rs528774139	chr15:34650676-34650677	Strong transcription Weak transcription Enhancers	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
12	rs141520353	chr15:34650687-34650688	Strong transcription Weak transcription Enhancers	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
13	rs571852408	chr15:34650734-34650735	Strong transcription Weak transcription Enhancers	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
14	rs539004815	chr15:34650784-34650785	Strong transcription Weak transcription Enhancers	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
15	rs551009034	chr15:34650816-34650817	Strong transcription Weak transcription Enhancers	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
16	rs569356490	chr15:34650832-34650833	Strong transcription Weak transcription Enhancers	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
17	rs551534973	chr15:34650853-34650854	Strong transcription Weak transcription Enhancers	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
18	rs181661590	chr15:34650891-34650892	Strong transcription Weak transcription Enhancers	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
19	rs185950167	chr15:34650932-34650933	Strong transcription Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
20	rs370344025	chr15:34650951-34650952	Strong transcription Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
21	rs7162607	chr15:34650986-34650987	Strong transcription Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
22	rs557108652	chr15:34651059-34651060	Strong transcription Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
23	rs537265398	chr15:34651098-34651099	Strong transcription Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
24	rs573799747	chr15:34651119-34651120	Strong transcription Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
25	rs544590031	chr15:34651126-34651127	Strong transcription Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
26	rs201560543	chr15:34651210-34651211	Strong transcription Weak transcription Genic enhancers Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
27	rs202247617	chr15:34651218-34651219	Strong transcription Weak transcription Genic enhancers Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
28	rs368552199	chr15:34651294-34651295	Strong transcription Weak transcription Genic enhancers Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
29	rs562925405	chr15:34651297-34651298	Strong transcription Weak transcription Genic enhancers Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
30	rs556567055	chr15:34651308-34651309	Strong transcription Weak transcription Genic enhancers Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
31	rs150950234	chr15:34651374-34651375	Strong transcription Weak transcription Genic enhancers Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
32	rs140766184	chr15:34651378-34651379	Strong transcription Weak transcription Genic enhancers Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
33	rs150097701	chr15:34651404-34651405	Strong transcription Weak transcription Genic enhancers Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
34	rs372160520	chr15:34651407-34651408	Strong transcription Weak transcription Genic enhancers Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
35	rs138378733	chr15:34651434-34651435	Strong transcription Weak transcription Genic enhancers Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
36	rs575211382	chr15:34651440-34651441	Strong transcription Weak transcription Genic enhancers Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
37	rs375783823	chr15:34651441-34651442	Strong transcription Weak transcription Genic enhancers Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
38	rs560831711	chr15:34651442-34651443	Strong transcription Weak transcription Genic enhancers Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
39	rs201047365	chr15:34651449-34651450	Strong transcription Weak transcription Genic enhancers Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
40	rs372209236	chr15:34651475-34651476	Strong transcription Weak transcription Genic enhancers Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
41	rs375303753	chr15:34651520-34651521	Strong transcription Weak transcription Genic enhancers Enhancers	n/a	n/a	Overlapped CNVs	n/a
42	rs372174058	chr15:34651536-34651537	Strong transcription Weak transcription Genic enhancers Enhancers	n/a	n/a	Overlapped CNVs	n/a
43	rs371277135	chr15:34651546-34651547	Strong transcription Weak transcription Genic enhancers Enhancers	n/a	n/a	Overlapped CNVs	n/a
44	rs373050431	chr15:34651554-34651555	Strong transcription Weak transcription Genic enhancers Enhancers	n/a	n/a	Overlapped CNVs	n/a
45	rs147028129	chr15:34651580-34651581	Strong transcription Weak transcription Genic enhancers Enhancers	n/a	n/a	Overlapped CNVs	n/a
46	rs4984236	chr15:34651587-34651588	Strong transcription Weak transcription Genic enhancers Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
47	rs191214273	chr15:34651609-34651610	Strong transcription Weak transcription Genic enhancers Enhancers	n/a	n/a	Overlapped CNVs	n/a
48	rs368638523	chr15:34651632-34651633	Strong transcription Weak transcription Genic enhancers Enhancers	n/a	n/a	Overlapped CNVs	n/a
49	rs183080914	chr15:34651646-34651647	Strong transcription Weak transcription Genic enhancers Enhancers	n/a	n/a	Overlapped CNVs	n/a
50	rs75985475	chr15:34651655-34651656	Strong transcription Weak transcription Genic enhancers Enhancers	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:67)

Disease	PMID	Source
HDAC8	0	CNVD
NIPBL	0	CNVD
RAD21	0	CNVD
SMC1A	0	CNVD
SMC3	0	CNVD
Ewing''s sarcoma	21437220	CNVD
Schizophrenia	19415332	CNVD
Breast cancer	22522925	CNVD
Autism	22495311	CNVD
Wilms tumour	21544195	CNVD
Angelman syndrome	16183798	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Testicular germ cell tumor	18059402	CNVD
cataract	16735990	CNVD
Cancer	21637783	CNVD
Colorectal cancer	20709793	CNVD
Medulloblastoma	21979893	CNVD
spastic paraplegia with thinning of corpus callosum	19105190	CNVD
Schizophrenia	21324950	CNVD
Astrocytoma	17387387	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Disease	21824424	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Melanoma	18172304	CNVD
Colorectal cancer	16774939	CNVD
Gastric cancer	17167181	CNVD
Neuroblastoma	19435921	CNVD
Colorectal cancer	19359472	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Multiple myeloma	17077331	CNVD
Colorectal cancer	16272173	CNVD
Gastrointestinal stromal cancer	20470368	CNVD
Multiple myeloma	17550852	CNVD
Intellectual disability	22102821	CNVD
Hodgkin''s lymphoma	17606441	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute myeloid leukemia	20729466	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Breast cancer	17133270	CNVD
Prostate cancer	16573809	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Multiple myeloma	20724749	CNVD
Lung cancer	18438408	CNVD
Breast cancer	21858162	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Breast cancer	21785460	CNVD
Abnormal corpus callosum	21572526	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Autism	19204725	CNVD
Schizophrenia	19204725	CNVD
Schizophrenia	19149910	CNVD
Ovarian cancer	22174824	CNVD
Prostate cancer	18632612	CNVD
small cell lung cancer	20016488	CNVD
Legius syndrome	19443465	CNVD
Holoprosencephaly	21359414	CNVD
Myelofibrosis	22110671	CNVD
Glioblastoma multiforme	22286061	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Prader-willi syndrome	21504564	CNVD
Cancer	17440070	CNVD
Basal cell lymphoma	17053054	CNVD
Pancreatic ductal adenocarcinoma	19077451	CNVD
Acute lymphoblastic leukemia	18458336	CNVD

Chromatin state (count:591 , 50 per page) page: 1 2 3 4 5 6 7 ... 12

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:34635600-34651200	Weak transcription	Pancreas	Pancrea
2	chr15:34635600-34657200	Weak transcription	Right Atrium	heart
3	chr15:34635800-34650600	Weak transcription	Primary B cells from peripheral blood	blood
4	chr15:34635800-34650800	Weak transcription	Primary monocytes fromperipheralblood	blood
5	chr15:34635800-34650800	Weak transcription	Small Intestine	intestine
6	chr15:34635800-34652600	Weak transcription	Fetal Heart	heart
7	chr15:34640000-34651000	Weak transcription	Primary hematopoietic stem cells	blood
8	chr15:34640800-34651200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr15:34642000-34657600	Weak transcription	Colon Smooth Muscle	Colon
10	chr15:34642600-34650800	Weak transcription	Muscle Satellite Cultured Cells	--
11	chr15:34642800-34650600	Weak transcription	Skeletal Muscle Male	skeletal muscle
12	chr15:34643600-34651800	Weak transcription	Placenta Amnion	Placenta Amnion
13	chr15:34644400-34657000	Weak transcription	Fetal Brain Male	brain
14	chr15:34644400-34657600	Weak transcription	HepG2	liver
15	chr15:34645400-34652600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
16	chr15:34645400-34654400	Strong transcription	Fetal Intestine Small	intestine
17	chr15:34645400-34656600	Strong transcription	Thymus	Thymus
18	chr15:34645400-34657800	Strong transcription	Fetal Stomach	stomach
19	chr15:34645600-34651200	Strong transcription	Duodenum Mucosa	Duodenum
20	chr15:34645600-34653800	Strong transcription	Fetal Intestine Large	intestine
21	chr15:34645600-34654400	Strong transcription	Sigmoid Colon	Sigmoid Colon
22	chr15:34645600-34656400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
23	chr15:34645600-34656600	Strong transcription	Primary T cells from cord blood	blood
24	chr15:34645800-34650600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
25	chr15:34645800-34650600	Strong transcription	Gastric	stomach
26	chr15:34645800-34650800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr15:34645800-34651000	Strong transcription	Stomach Mucosa	stomach
28	chr15:34645800-34651200	Strong transcription	Esophagus	oesophagus
29	chr15:34645800-34651600	Strong transcription	Rectal Mucosa Donor 31	rectum
30	chr15:34645800-34651800	Strong transcription	Rectal Mucosa Donor 29	rectum
31	chr15:34645800-34654600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
32	chr15:34645800-34655800	Strong transcription	Primary T cells fromperipheralblood	blood
33	chr15:34645800-34655800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
34	chr15:34645800-34656400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
35	chr15:34645800-34656600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr15:34645800-34656600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
37	chr15:34645800-34657000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
38	chr15:34646000-34651600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
39	chr15:34646000-34652200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
40	chr15:34646200-34652800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
41	chr15:34646200-34655400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
42	chr15:34646400-34650600	Weak transcription	Brain Angular Gyrus	brain
43	chr15:34646400-34654600	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
44	chr15:34646400-34656000	Strong transcription	H9 Cell Line	embryonic stem cell
45	chr15:34646400-34656600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
46	chr15:34646600-34651800	Strong transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr15:34646600-34655000	Strong transcription	Lung	lung
48	chr15:34646600-34656200	Strong transcription	Fetal Brain Female	brain
49	chr15:34646600-34656400	Strong transcription	Primary T helper cells fromperipheralblood	blood
50	chr15:34646600-34656400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links