Variant report

Variant	nsv870063
Chromosome Location	chr9:139633889-139659615
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1084)
CpG islands
(count:2077)
Chromatin interactive
region (count:60)
LncRNA
region (count:7)
Mature miRNA
region (count: 2)
miRNA target
sites (count:0)

(count:1084 , 50 per page) page: 1 2 3 4 5 6 7 ... 22

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr9:139652959-139653070	K562	blood:	n/a	n/a
2	ARID3A	chr9:139652906-139653126	HepG2	liver:	n/a	n/a
3	ATF3	chr9:139635433-139635724	HepG2	liver:	n/a	n/a
4	BACH1	chr9:139657401-139657626	H1-hESC	embryonic stem cell:	n/a	n/a
5	BACH1	chr9:139652841-139653044	H1-hESC	embryonic stem cell:	n/a	n/a
6	BACH1	chr9:139655275-139655596	H1-hESC	embryonic stem cell:	n/a	n/a
7	BATF	chr9:139645032-139645290	GM12878	blood:	n/a	n/a
8	BATF	chr9:139644974-139645337	GM12878	blood:	n/a	n/a
9	BCL3	chr9:139655277-139655803	A549	lung:	n/a	n/a
10	BHLHE40	chr9:139652871-139652994	K562	blood:	n/a	n/a
11	BHLHE40	chr9:139648534-139648893	HepG2	liver:	n/a	chr9:139648708-139648721
12	BHLHE40	chr9:139657919-139657959	K562	blood:	n/a	n/a
13	BHLHE40	chr9:139635435-139636564	GM12878	blood:	n/a	chr9:139635488-139635504
14	BHLHE40	chr9:139654962-139655083	K562	blood:	n/a	n/a
15	BHLHE40	chr9:139635451-139635778	HepG2	liver:	n/a	chr9:139635488-139635504
16	BHLHE40	chr9:139655348-139655586	K562	blood:	n/a	n/a
17	BHLHE40	chr9:139635423-139635793	K562	blood:	n/a	chr9:139635488-139635504
18	BRCA1	chr9:139652975-139653071	Hela-S3	cervix:	n/a	n/a
19	CBX3	chr9:139652792-139653188	K562	blood:	n/a	n/a
20	CBX3	chr9:139646168-139646643	K562	blood:	n/a	n/a
21	CBX3	chr9:139655300-139655672	K562	blood:	n/a	n/a
22	CBX3	chr9:139650016-139650972	K562	blood:	n/a	n/a
23	CBX3	chr9:139649869-139651073	K562	blood:	n/a	n/a
24	CBX3	chr9:139646212-139646660	HCT-116	colon:	n/a	n/a
25	CBX3	chr9:139652856-139653200	K562	blood:	n/a	n/a
26	CBX3	chr9:139645449-139646115	K562	blood:	n/a	n/a
27	CCNT2	chr9:139652859-139653112	K562	blood:	n/a	n/a
28	CCNT2	chr9:139657431-139657647	K562	blood:	n/a	n/a
29	CEBPB	chr9:139652923-139653124	A549	lung:	n/a	n/a
30	CEBPB	chr9:139652900-139653141	Hela-S3	cervix:	n/a	n/a
31	CEBPB	chr9:139655398-139655477	K562	blood:	n/a	n/a
32	CEBPB	chr9:139652930-139653146	H1-hESC	embryonic stem cell:	n/a	n/a
33	CEBPB	chr9:139655688-139655879	K562	blood:	n/a	chr9:139655768-139655779
34	CEBPB	chr9:139652972-139653130	HepG2	liver:	n/a	n/a
35	CEBPB	chr9:139655745-139655828	HepG2	liver:	n/a	chr9:139655768-139655779
36	CHD2	chr9:139652905-139652944	K562	blood:	n/a	n/a
37	CHD2	chr9:139636400-139636774	GM12878	blood:	n/a	n/a
38	CHD2	chr9:139652916-139653108	H1-hESC	embryonic stem cell:	n/a	n/a
39	CHD2	chr9:139655401-139655501	H1-hESC	embryonic stem cell:	n/a	n/a
40	CHD2	chr9:139640192-139640392	K562	blood:	n/a	n/a
41	CHD2	chr9:139637254-139637433	H1-hESC	embryonic stem cell:	n/a	n/a
42	CREB1	chr9:139655340-139655679	A549	lung:	n/a	n/a
43	CTBP2	chr9:139637236-139637740	H1-hESC	embryonic stem cell:	n/a	n/a
44	CTCF	chr9:139652906-139653108	Pancreas_OC	pancreas:	n/a	chr9:139652998-139653011 chr9:139652998-139653007
45	CTCF	chr9:139655420-139655570	Hela-S3	cervix:	n/a	n/a
46	CTCF	chr9:139637440-139637590	HPAF	blood vessel:	n/a	n/a
47	CTCF	chr9:139652960-139653110	HFF-Myc	foreskin:	n/a	chr9:139652998-139653011 chr9:139652998-139653007
48	CTCF	chr9:139637480-139637630	GM12875	blood:	n/a	n/a
49	CTCF	chr9:139637460-139637610	AG09319	gingival:	n/a	n/a
50	CTCF	chr9:139655065-139655714	A549	lung:	n/a	chr9:139655117-139655130

(count:2077 , 50 per page) page: 1 2 3 4 5 6 7 ... 42

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr9:139648321-139648371	SK-N-SH_RA	brain:	n/a
2	chr9:139642875-139642925	HRE	kidney:	n/a
3	chr9:139637747-139637797	ECC-1	luminal epithelium:	n/a
4	chr9:139648321-139648371	SK-N-SH_RA	brain:	n/a
5	chr9:139642875-139642925	HRE	kidney:	n/a
6	chr9:139637747-139637797	ECC-1	luminal epithelium:	n/a
7	chr9:139634196-139634246	ovcar-3	ovarian:	n/a
8	chr9:139648167-139648217	PANC-1	pancreas:	n/a
9	chr9:139640884-139640934	SK-N-SH_RA	brain:	n/a
10	chr9:139644102-139644152	HRE	kidney:	n/a
11	chr9:139653461-139653511	HAEpiC	amniotic membrane:	n/a
12	chr9:139638566-139638616	ProgFib	skin:	n/a
13	chr9:139636616-139636666	NHBE	bronchial:	n/a
14	chr9:139648321-139648371	A549	lung:	n/a
15	chr9:139640884-139640934	SK-N-SH	brain:	n/a
16	chr9:139637747-139637797	Jurkat	blood:	n/a
17	chr9:139648321-139648371	NH-A	brain:	n/a
18	chr9:139644102-139644152	HRPEpiC	eye:	n/a
19	chr9:139653461-139653511	NHDF-neo	bronchial:	n/a
20	chr9:139652874-139652924	GM19239	blood:	n/a
21	chr9:139648321-139648371	AG09319	gingival:	n/a
22	chr9:139634272-139634322	AG09319	gingival:	n/a
23	chr9:139658896-139658946	NT2-D1	testis:	n/a
24	chr9:139640661-139640711	SK-N-SH_RA	brain:	n/a
25	chr9:139653461-139653511	AG09309	skin:	n/a
26	chr9:139640053-139640103	HNPCEpiC	eye:	n/a
27	chr9:139634196-139634246	MCF10A-Er-Src	breast:	n/a
28	chr9:139653461-139653511	HRPEpiC	eye:	n/a
29	chr9:139657079-139657129	HEK293	kidney:	embryo
30	chr9:139653461-139653511	GM06990	blood:	n/a
31	chr9:139649039-139649089	PANC-1	pancreas:	n/a
32	chr9:139634272-139634322	GM12892	blood:	n/a
33	chr9:139640661-139640711	NHBE	bronchial:	n/a
34	chr9:139649039-139649089	SK-N-SH	brain:	n/a
35	chr9:139652874-139652924	ECC-1	luminal epithelium:	n/a
36	chr9:139636493-139636543	A549	lung:	n/a
37	chr9:139648911-139648961	HCF	heart:	n/a
38	chr9:139652874-139652924	HEEpiC	esophagus:	n/a
39	chr9:139640884-139640934	T-47D	breast:	n/a
40	chr9:139642998-139643048	HL-60	blood:	n/a
41	chr9:139641402-139641452	MCF10A-Er-Src	breast:	n/a
42	chr9:139640325-139640375	NHBE	bronchial:	n/a
43	chr9:139640884-139640934	MCF10A-Er-Src	breast:	n/a
44	chr9:139637747-139637797	PFSK-1	brain:	n/a
45	chr9:139638566-139638616	K562	blood:	n/a
46	chr9:139652874-139652924	SAEC	small airway:	n/a
47	chr9:139653003-139653053	NH-A	brain:	n/a
48	chr9:139643351-139643401	SK-N-SH_RA	brain:	n/a
49	chr9:139652874-139652924	Hepatocyte	liver:	n/a
50	chr9:139644102-139644152	CMK	blood:	n/a

(count:60 , 50 per page) page: 1 2

No.	Distal block	Cell Line	Cell type
1	chr9:139653006..139655212-chr9:139781373..139783358,2	K562	blood:
2	chr9:139632417..139634367-chr9:139643293..139644926,2	K562	blood:
3	chr9:139650089..139654106-chr9:139702171..139705426,4	K562	blood:
4	chr9:139588755..139589279-chr9:139654880..139655521,2	K562	blood:
5	chr9:139637504..139640391-chr9:139641154..139643856,2	MCF-7	breast:
6	chr9:139621206..139624482-chr9:139640401..139643595,4	MCF-7	breast:
7	chr9:139655316..139662123-chr9:139682792..139687315,9	K562	blood:
8	chr9:139635253..139638024-chr9:139639450..139641983,3	MCF-7	breast:
9	chr9:139618685..139627120-chr9:139649384..139659403,28	K562	blood:
10	chr9:139645961..139648755-chr9:139656725..139659438,2	MCF-7	breast:
11	chr9:139631249..139635654-chr9:139635707..139638704,5	K562	blood:
12	chr9:139632483..139636440-chr9:139640096..139643010,3	MCF-7	breast:
13	chr9:139606573..139608819-chr9:139656066..139657601,2	MCF-7	breast:
14	chr9:139635847..139638838-chr9:139639718..139641868,2	K562	blood:
15	chr9:139653903..139656567-chr9:139886305..139888308,2	K562	blood:
16	chr9:139656148..139658977-chr9:139660169..139662564,2	MCF-7	breast:
17	chr9:139655283..139657944-chr9:139685460..139686962,2	MCF-7	breast:
18	chr9:139654976..139656765-chr9:139872353..139874072,2	MCF-7	breast:
19	chr9:139647454..139647954-chr9:139685898..139686399,2	MCF-7	breast:
20	chr9:139635375..139637243-chr9:139643749..139646523,2	K562	blood:
21	chr9:139656199..139658013-chr9:140134391..140136667,2	K562	blood:
22	chr9:139375807..139377467-chr9:139632609..139634528,2	K562	blood:
23	chr9:139646814..139650138-chr9:139650163..139653063,4	K562	blood:
24	chr9:139632127..139635237-chr9:139635834..139637855,3	MCF-7	breast:
25	chr9:139637798..139646130-chr9:139646559..139652545,9	MCF-7	breast:
26	chr9:139632417..139634367-chr9:139643293..139644926,2	K562	blood:
27	chr9:139637798..139646130-chr9:139646559..139652545,9	MCF-7	breast:
28	chr9:139656068..139657705-chr9:140147691..140150270,2	K562	blood:
29	chr9:139580165..139583818-chr9:139653958..139659503,5	K562	blood:
30	chr9:139639953..139642628-chr9:139643454..139646465,3	MCF-7	breast:
31	chr9:139637504..139640391-chr9:139641154..139643856,2	MCF-7	breast:
32	chr9:139656219..139658957-chr9:139838927..139840752,2	K562	blood:
33	chr9:139656220..139657844-chr9:139664541..139666356,2	K562	blood:
34	chr9:139635253..139638024-chr9:139639450..139641983,3	MCF-7	breast:
35	chr9:139637379..139639928-chr9:139653012..139656752,3	K562	blood:
36	chr9:139646138..139648596-chr9:139651023..139652870,2	MCF-7	breast:
37	chr9:139639885..139642896-chr9:139646566..139649792,3	K562	blood:
38	chr9:139569086..139572014-chr9:139637166..139639125,2	MCF-7	breast:
39	chr9:139655390..139657069-chr9:139657149..139658883,2	MCF-7	breast:
40	chr9:139635852..139637556-chr9:139649597..139651155,2	MCF-7	breast:
41	chr9:139645137..139647885-chr9:139650715..139653597,2	MCF-7	breast:
42	chr9:139651436..139654006-chr9:139655466..139657781,3	MCF-7	breast:
43	chr9:139640986..139643287-chr9:139653533..139657718,5	K562	blood:
44	chr9:139654549..139657197-chr9:139741303..139743750,3	MCF-7	breast:
45	chr9:139633273..139636250-chr9:139651258..139653262,2	MCF-7	breast:
46	chr9:139632870..139635001-chr9:139636207..139639164,3	K562	blood:
47	chr9:139616966..139626046-chr9:139651480..139662091,27	MCF-7	breast:
48	chr9:139612680..139614958-chr9:139653877..139656108,2	MCF-7	breast:
49	chr9:139304507..139306581-chr9:139643933..139645601,2	K562	blood:
50	chr9:139620315..139626197-chr9:139646581..139660029,24	MCF-7	breast:

(count:7 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-FAM69B-3	chr9:139643198-139644363	NONHSAT135592
2	lnc-LCN15-2	chr9:139658196-139658235	NONHSAT135596
3	lnc-LCN15-2	chr9:139658322-139658417	NONHSAT135596
4	lnc-LCN15-2	chr9:139654086-139654166	NONHSAT135596
5	lnc-LCN15-2	chr9:139658845-139658916	NONHSAT135596
6	lnc-FAM69B-3	chr9:139640613-139640653	NONHSAT135592
7	lnc-FAM69B-3	chr9:139641530-139643024	NONHSAT135592

miRNA name	Chromosome Location	mirBase accession
hsa-miR-6722-3p	chr9:139641355-139641376	MIMAT0025854
hsa-miR-6722-5p	chr9:139641393-139641412	MIMAT0025853

No data

Variant related genes	Relation type
LCN8	TF binding region
LCN15	TF binding region
LCN6	TF binding region
LCN10	TF binding region
ENSG00000204003	TF binding region
LCN8	CpG island
LCN15	CpG island
LCN6	CpG island
LCN10	CpG island
ENSG00000204003	CpG island
ENSG00000107223	chromatin interactions
ENSG00000267206	chromatin interactions
ENSG00000233016	chromatin interactions
ENSG00000177984	chromatin interactions
ENSG00000169692	chromatin interactions
ENSG00000159069	chromatin interactions
ENSG00000188229	chromatin interactions
ENSG00000148362	chromatin interactions
ENSG00000187922	chromatin interactions
ENSG00000165688	chromatin interactions
ENSG00000054148	chromatin interactions
ENSG00000176919	chromatin interactions
ENSG00000196642	chromatin interactions
ENSG00000165716	chromatin interactions
ENSG00000165689	chromatin interactions
ENSG00000204001	chromatin interactions
ENSG00000244187	chromatin interactions
ENSG00000272896	chromatin interactions
ENSG00000213213	chromatin interactions
ENSG00000204003	chromatin interactions
ENSG00000107317	chromatin interactions
ENSG00000188986	chromatin interactions
ENSG00000228544	chromatin interactions

Extended variants
information (count: 1433 )
Associated
traits (count: 84 )

Variant overlapped rSNPs/rCNVs (count:1433 , 50 per page) page: 1 2 3 4 5 6 7 ... 29

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs374351599	chr9:139633891-139633892	Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers	Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
2	rs149102065	chr9:139633903-139633904	Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers	Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
3	rs546447814	chr9:139633909-139633910	Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers	Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
4	rs372240260	chr9:139633913-139633914	Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers	Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
5	rs374912642	chr9:139633919-139633920	Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers	Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
6	rs532008698	chr9:139633926-139633927	Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers	Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
7	rs144903387	chr9:139633943-139633944	Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers	Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
8	rs371990989	chr9:139633949-139633950	Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers	Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
9	rs375095483	chr9:139633969-139633970	Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers	Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
10	rs144589797	chr9:139633985-139633986	Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers	Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
11	rs114525382	chr9:139633990-139633991	Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers	Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
12	rs369873695	chr9:139633994-139633995	Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers	Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
13	rs115170022	chr9:139633996-139633997	Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers	Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
14	rs532156338	chr9:139633999-139634000	Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers	Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
15	rs201438477	chr9:139634012-139634013	Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
16	rs369877808	chr9:139634021-139634022	Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
17	rs368977538	chr9:139634053-139634054	Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
18	rs188694514	chr9:139634063-139634064	Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
19	rs146718889	chr9:139634072-139634073	Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
20	rs116557487	chr9:139634087-139634088	Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
21	rs568352724	chr9:139634101-139634102	Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
22	rs367635724	chr9:139634102-139634103	Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
23	rs534231990	chr9:139634121-139634122	Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
24	rs191641202	chr9:139634122-139634123	Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
25	rs577384314	chr9:139634136-139634137	Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
26	rs546335670	chr9:139634153-139634154	Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
27	rs184143065	chr9:139634164-139634165	Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
28	rs140358439	chr9:139634165-139634166	Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
29	rs114417543	chr9:139634171-139634172	Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
30	rs559376581	chr9:139634201-139634202	Weak transcription Genic enhancers Strong transcription Bivalent Enhancer	Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
31	rs529644215	chr9:139634208-139634209	Weak transcription Genic enhancers Strong transcription Bivalent Enhancer	Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
32	rs540255618	chr9:139634213-139634214	Weak transcription Genic enhancers Strong transcription Bivalent Enhancer	Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
33	rs188055554	chr9:139634253-139634254	Weak transcription Genic enhancers Strong transcription Bivalent Enhancer	Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
34	rs532034882	chr9:139634272-139634273	Weak transcription Genic enhancers Strong transcription Bivalent Enhancer	Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
35	rs551857754	chr9:139634273-139634274	Weak transcription Genic enhancers Strong transcription Bivalent Enhancer	Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
36	rs568706515	chr9:139634281-139634282	Weak transcription Genic enhancers Strong transcription Bivalent Enhancer	Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
37	rs528279621	chr9:139634295-139634296	Weak transcription Genic enhancers Strong transcription Bivalent Enhancer	Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
38	rs531442331	chr9:139634324-139634325	Weak transcription Genic enhancers Strong transcription Bivalent Enhancer	Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
39	rs548170678	chr9:139634345-139634346	Weak transcription Genic enhancers Strong transcription Bivalent Enhancer	Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
40	rs202074518	chr9:139634350-139634351	Weak transcription Genic enhancers Strong transcription Bivalent Enhancer	Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
41	rs533865454	chr9:139634356-139634357	Weak transcription Genic enhancers Strong transcription Bivalent Enhancer	Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
42	rs200544154	chr9:139634363-139634364	Weak transcription Genic enhancers Strong transcription Bivalent Enhancer	Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
43	rs73554078	chr9:139634375-139634376	Weak transcription Genic enhancers Strong transcription Bivalent Enhancer	Chromatin interactive region	6 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
44	rs145336039	chr9:139634377-139634378	Weak transcription Genic enhancers Strong transcription Bivalent Enhancer	Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
45	rs148019825	chr9:139634402-139634403	Weak transcription Genic enhancers Strong transcription Bivalent Enhancer	Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
46	rs576702839	chr9:139634412-139634413	Weak transcription Genic enhancers Strong transcription Bivalent Enhancer	Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
47	rs536082781	chr9:139634420-139634421	Weak transcription Genic enhancers Strong transcription Bivalent Enhancer	Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
48	rs376710313	chr9:139634424-139634425	Weak transcription Genic enhancers Strong transcription Bivalent Enhancer	Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
49	rs371640416	chr9:139634454-139634455	Weak transcription Genic enhancers Strong transcription Bivalent Enhancer	Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
50	rs148487810	chr9:139634458-139634459	Weak transcription Genic enhancers Strong transcription Bivalent Enhancer	Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:84)

Disease	PMID	Source
Acute lymphoblastic leukemia	22237106	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Chordoma	21602918	CNVD
Renal cell carcinoma	18592004	CNVD
Developmental delay	19490664	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Medulloblastoma	21979893	CNVD
microdeletion syndrome	16199537	CNVD
Urothelial carcinoma	21177765	CNVD
Cancer	16751803	CNVD
Myelofibrosis	22110671	CNVD
Leukemia	17361228	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Glioblastoma	16823260	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Non-small cell lung cancer	21044232	CNVD
Brain cancer	20823417	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Astrocytoma	17387387	CNVD
Glioblastoma multiforme	21080181	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Renal cell carcinoma	19461508	CNVD
Neuroblastoma	18923191	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Heart disease	21282601	CNVD
Lung cancer	18438408	CNVD
Breast cancer	17603634	CNVD
Oral cancer	21386901	CNVD
Cardiac fibroma	18329553	CNVD
Lung cancer	19147751	CNVD
Melanoma	18172304	CNVD
Cervical cancer	16585170	CNVD
Ependymoma	19289631	CNVD
Acute lymphoblastic leukemia	17443227	CNVD
Cervical cancer	17311676	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Gastric cancer	17908304	CNVD
Breast cancer	16608533	CNVD
Metanephric adenoma	20802469	CNVD
Adenoid cystic carcinoma	18698036	CNVD
Salivary gland adenoid cystic carcinoma	17545515	CNVD
Chordoma	18071362	CNVD
small cell lung cancer	20016488	CNVD
T-cell acute lymphoblastic leukemia	20065082	CNVD
Kleefstra Syndrome	21538692	CNVD
Disorders of sex development	22290220	CNVD
Cancer	21183584	CNVD
Chronic myelomonocytic leukemia	16760666	CNVD
Abnormal phenotypes	18644119	CNVD
Ovarian cancer	21720365	CNVD
Primary mediastinal b-cell lymphoma	17728785	CNVD
Sudden cardiac death	19188705	CNVD
Myoepithelioma	18604193	CNVD
Tuberous sclerosis	19566914	CNVD
Multiple myeloma	16616336	CNVD
Acute lymphoblastic leukemia	19100363	CNVD
Breast cancer	21364760	CNVD
Acute lymphoblastic leukemia	21248843	CNVD
Hepatocellular carcinoma	22174799	CNVD
Idiopathic chronic pancreatitis	21572526	CNVD
Kleefstra syndrome	22670141	CNVD
Schizophrenia	22241247	CNVD
9q deletion syndrome	16826528	CNVD
Primary central nervous system lymphoma	21088137	CNVD
Non-small cell lung cancer	21829676	CNVD
Non-syndromic sensorineural hearing loss	19293338	CNVD
Neurodevelopmental disorder	22521361	CNVD
Acute lymphoblastic leukemia	21098271	CNVD
Mantle cell lymphoma	19029149	CNVD
Autism	20808228	CNVD
Epilepsy	22083797	CNVD
Cancer	20164920	CNVD
Breast cancer	21509527	CNVD
Developmental delay	20877625	CNVD
Hypoplastic	20877625	CNVD
Mental retardation	20877625	CNVD
Microcephaly	20877625	CNVD
Palpebral fissures	20877625	CNVD
Melanoma	20877625	CNVD
Medulloblastoma	21163964	CNVD
Breast cancer	22522925	CNVD

Chromatin state (count:707 , 50 per page) page: 1 2 3 4 5 6 7 ... 15

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:139623600-139635600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
2	chr9:139623800-139635400	Weak transcription	Right Atrium	heart
3	chr9:139623800-139636400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr9:139624000-139634000	Weak transcription	Primary B cells from cord blood	blood
5	chr9:139624000-139635200	Weak transcription	Gastric	stomach
6	chr9:139624000-139635600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr9:139624800-139635200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr9:139627600-139635400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
9	chr9:139627600-139635600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr9:139630800-139634800	Weak transcription	Fetal Thymus	thymus
11	chr9:139632800-139634400	Strong transcription	Primary B cells from peripheral blood	blood
12	chr9:139633000-139634400	Strong transcription	Right Ventricle	heart
13	chr9:139633000-139635000	Strong transcription	Spleen	Spleen
14	chr9:139633200-139634000	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
15	chr9:139633400-139634200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
16	chr9:139633400-139636000	Genic enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr9:139633600-139634000	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin01	Skin
18	chr9:139633800-139634000	Enhancers	K562	blood
19	chr9:139633800-139634200	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr9:139634000-139634600	Strong transcription	Primary B cells from cord blood	blood
21	chr9:139634000-139635400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
22	chr9:139634000-139635600	Weak transcription	K562	blood
23	chr9:139634200-139635200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
24	chr9:139634200-139635400	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr9:139634400-139634800	Genic enhancers	Primary B cells from peripheral blood	blood
26	chr9:139634400-139634800	Weak transcription	Right Ventricle	heart
27	chr9:139634600-139634800	Weak transcription	Primary B cells from cord blood	blood
28	chr9:139634800-139635000	Enhancers	Primary B cells from peripheral blood	blood
29	chr9:139634800-139635000	Bivalent Enhancer	Colonic Mucosa	Colon
30	chr9:139634800-139635200	Enhancers	Primary B cells from cord blood	blood
31	chr9:139634800-139636000	Enhancers	Fetal Thymus	thymus
32	chr9:139634800-139636200	Enhancers	Right Ventricle	heart
33	chr9:139634800-139638000	Enhancers	Fetal Heart	heart
34	chr9:139635000-139635200	ZNF genes & repeats	Spleen	Spleen
35	chr9:139635000-139635400	Enhancers	Fetal Intestine Large	intestine
36	chr9:139635000-139635600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
37	chr9:139635000-139635600	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin01	Skin
38	chr9:139635000-139635800	Enhancers	Brain Hippocampus Middle	brain
39	chr9:139635000-139636400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
40	chr9:139635000-139636400	Bivalent Enhancer	Fetal Muscle Trunk	muscle
41	chr9:139635000-139636600	Bivalent Enhancer	Fetal Muscle Leg	muscle
42	chr9:139635000-139637400	Flanking Active TSS	Primary B cells from peripheral blood	blood
43	chr9:139635000-139637800	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
44	chr9:139635200-139635400	Bivalent Enhancer	Breast Myoepithelial Primary Cells	Breast
45	chr9:139635200-139635400	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
46	chr9:139635200-139635400	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
47	chr9:139635200-139635400	Bivalent Enhancer	HepG2	liver
48	chr9:139635200-139635600	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
49	chr9:139635200-139635600	Enhancers	Primary T helper cells PMA-I stimulated	--
50	chr9:139635200-139635600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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