Variant report

Variant	nsv870428
Chromosome Location	chr10:83035110-83306265
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:35)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:35 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:83187635..83190480-chr10:83192191..83193978,2	K562	blood:
2	chr10:83166292..83168254-chr10:83168620..83171588,2	K562	blood:
3	chr10:83086678..83089633-chr10:83090595..83092763,2	MCF-7	breast:
4	chr10:83064072..83066890-chr10:83070171..83074238,3	K562	blood:
5	chr10:83184138..83185730-chr10:83186602..83188404,2	MCF-7	breast:
6	chr10:83173594..83174407-chr10:83579945..83580809,6	MCF-7	breast:
7	chr10:82459149..82460018-chr10:83107533..83108261,2	MCF-7	breast:
8	chr10:83086678..83089633-chr10:83090595..83092763,2	MCF-7	breast:
9	chr10:83187635..83190327-chr10:83192478..83195276,2	K562	blood:
10	chr10:83108354..83111179-chr10:83112427..83114161,2	MCF-7	breast:
11	chr10:83240127..83242125-chr10:83244637..83246199,2	MCF-7	breast:
12	chr10:83187635..83190327-chr10:83192478..83195276,2	K562	blood:
13	chr10:83168055..83170471-chr10:83172964..83175502,2	K562	blood:
14	chr10:83240127..83242125-chr10:83244637..83246199,2	MCF-7	breast:
15	chr10:83272245..83276354-chr10:83281692..83284767,3	MCF-7	breast:
16	chr10:83169207..83171980-chr10:83171982..83173931,2	MCF-7	breast:
17	chr10:83173793..83174788-chr10:83579814..83580608,4	MCF-7	breast:
18	chr10:83215519..83216361-chr16:146667..147520,2	MCF-7	breast:
19	chr10:83169442..83171597-chr10:83174535..83176975,2	K562	blood:
20	chr10:83173421..83174486-chr10:83598404..83599300,4	MCF-7	breast:
21	chr10:83064072..83066890-chr10:83070171..83074238,3	K562	blood:
22	chr10:83169442..83171597-chr10:83174535..83176975,2	K562	blood:
23	chr10:83273413..83276377-chr10:83278603..83280338,2	K562	blood:
24	chr10:83257478..83259594-chr10:83260723..83262916,2	MCF-7	breast:
25	chr10:83184138..83185730-chr10:83186602..83188404,2	MCF-7	breast:
26	chr10:83139370..83142179-chr10:83143741..83145936,3	K562	blood:
27	chr10:83166292..83168254-chr10:83168620..83171588,2	K562	blood:
28	chr10:83187635..83190480-chr10:83192191..83193978,2	K562	blood:
29	chr10:83168055..83170471-chr10:83172964..83175502,2	K562	blood:
30	chr10:83273413..83276377-chr10:83278603..83280338,2	K562	blood:
31	chr10:83139370..83142179-chr10:83143741..83145936,3	K562	blood:
32	chr10:83257478..83259594-chr10:83260723..83262916,2	MCF-7	breast:
33	chr10:83272245..83276354-chr10:83281692..83284767,3	MCF-7	breast:
34	chr10:83169207..83171980-chr10:83171982..83173931,2	MCF-7	breast:
35	chr10:83108354..83111179-chr10:83112427..83114161,2	MCF-7	breast:

No data

Extended variants
information (count: 1215 )
Associated
traits (count: 61 )

Variant overlapped rSNPs/rCNVs (count:1215 , 50 per page) page: 1 2 3 4 5 6 7 ... 25

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs564406181	chr10:83036842-83036843	Enhancers	n/a	n/a	Overlapped CNVs	n/a
2	rs532761337	chr10:83036847-83036848	Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs190777518	chr10:83036849-83036850	Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs548603231	chr10:83036863-83036864	Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs61853861	chr10:83036869-83036870	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
6	rs548718163	chr10:83036874-83036875	Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs77099332	chr10:83036889-83036890	Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs58529050	chr10:83036928-83036929	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
9	rs530482535	chr10:83036953-83036954	Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs11189147	chr10:83036991-83036992	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
11	rs571145304	chr10:83037046-83037047	Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs539779746	chr10:83037050-83037051	Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs142238752	chr10:83037054-83037055	Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs112933895	chr10:83037057-83037058	Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs115945661	chr10:83037058-83037059	Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs182932213	chr10:83037099-83037100	Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs555904298	chr10:83037102-83037103	Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs572222794	chr10:83037104-83037105	Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs185786382	chr10:83037120-83037121	Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs113677087	chr10:83037121-83037122	Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs199614169	chr10:83037123-83037124	Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs555170130	chr10:83037138-83037139	Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs543382748	chr10:83037142-83037143	Enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs562943568	chr10:83037154-83037155	Enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs369893127	chr10:83037245-83037246	Enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs528899178	chr10:83037250-83037251	Enhancers	n/a	n/a	Overlapped CNVs	n/a
27	rs10882901	chr10:83037263-83037264	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
28	rs565442769	chr10:83037295-83037296	Enhancers	n/a	n/a	Overlapped CNVs	n/a
29	rs527853478	chr10:83037296-83037297	Enhancers	n/a	n/a	Overlapped CNVs	n/a
30	rs146383081	chr10:83037347-83037348	Enhancers	n/a	n/a	Overlapped CNVs	n/a
31	rs10882902	chr10:83037369-83037370	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
32	rs4282934	chr10:83037374-83037375	Enhancers	n/a	n/a	Overlapped CNVs	n/a
33	rs571813371	chr10:83037394-83037395	Enhancers	n/a	n/a	Overlapped CNVs	n/a
34	rs139715449	chr10:83037405-83037406	Enhancers	n/a	n/a	Overlapped CNVs	n/a
35	rs556936636	chr10:83037443-83037444	Enhancers	n/a	n/a	Overlapped CNVs	n/a
36	rs573823320	chr10:83037470-83037471	Enhancers	n/a	n/a	Overlapped CNVs	n/a
37	rs535851124	chr10:83037483-83037484	Enhancers	n/a	n/a	Overlapped CNVs	n/a
38	rs556472823	chr10:83037515-83037516	Enhancers	n/a	n/a	Overlapped CNVs	n/a
39	rs555867129	chr10:83037546-83037547	Enhancers	n/a	n/a	Overlapped CNVs	n/a
40	rs572516024	chr10:83037559-83037560	Enhancers	n/a	n/a	Overlapped CNVs	n/a
41	rs75526915	chr10:83037591-83037592	Enhancers	n/a	n/a	Overlapped CNVs	n/a
42	rs557915789	chr10:83037626-83037627	Enhancers	n/a	n/a	Overlapped CNVs	n/a
43	rs577809158	chr10:83037636-83037637	Enhancers	n/a	n/a	Overlapped CNVs	n/a
44	rs182497463	chr10:83037649-83037650	Enhancers	n/a	n/a	Overlapped CNVs	n/a
45	rs540827666	chr10:83037656-83037657	Enhancers	n/a	n/a	Overlapped CNVs	n/a
46	rs563251920	chr10:83037683-83037684	Enhancers	n/a	n/a	Overlapped CNVs	n/a
47	rs573255649	chr10:83037685-83037686	Enhancers	n/a	n/a	Overlapped CNVs	n/a
48	rs150026288	chr10:83037696-83037697	Enhancers	n/a	n/a	Overlapped CNVs	n/a
49	rs558990094	chr10:83037697-83037698	Enhancers	n/a	n/a	Overlapped CNVs	n/a
50	rs372531602	chr10:83037745-83037746	Enhancers	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:61)

Disease	PMID	Source
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Ewing''s sarcoma	17952124	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
Prostate cancer	18632612	CNVD
Cockayne syndrome	18421352	CNVD
Glioblastoma	16823260	CNVD
Medulloblastoma	16968546	CNVD
Neuroblastoma	17533364	CNVD
Squamous cell cancer	21044232	CNVD
Glioma	21971842	CNVD
Cancer	21637783	CNVD
Non-small cell lung cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Colorectal cancer	20709793	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Lung cancer	18438408	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Usher syndrome	20538994	CNVD
Medulloblastoma	16783165	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Breast cancer	21785460	CNVD
Acute myeloid leukemia	20729466	CNVD
Prostate cancer	16573809	CNVD
Paraganglioma	17535989	CNVD
Submicroscopic aberration syndrome	21292638	CNVD
Gastrointestinal stromal cancer	17535989	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Pulmonary chondroma	17535989	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
small cell lung cancer	20016488	CNVD
Myelofibrosis	22110671	CNVD
Colorectal cancer	18645599	CNVD
Polyposis syndrome	18645599	CNVD
Prostate cancer	17245344	CNVD
Glioblastoma multiforme	17369134	CNVD
Glioblastoma multiforme	21750150	CNVD
Breast cancer	22032731	CNVD
Ovarian cancer	20844748	CNVD
Glioblastoma multiforme	17002787	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	17603634	CNVD
Glioblastoma multiforme	17387387	CNVD
Breast cancer	21364760	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD
Urothelial carcinoma	21177765	CNVD
Non-syndromic sensorineural hearing loss	18451855	CNVD

Chromatin state (count:53 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:83036800-83037800	Enhancers	iPS-15b Cell Line	embryonic stem cell
2	chr10:83037200-83037800	Enhancers	iPS-18 Cell Line	embryonic stem cell
3	chr10:83037400-83037800	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr10:83037400-83038000	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr10:83037400-83038200	Enhancers	iPS-20b Cell Line	embryonic stem cell
6	chr10:83056600-83057600	Active TSS	A549	lung
7	chr10:83063600-83064000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr10:83067000-83067600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr10:83067200-83067600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr10:83067200-83067600	Enhancers	HMEC	breast
11	chr10:83072800-83074400	Enhancers	Fetal Brain Male	brain
12	chr10:83074000-83074600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr10:83074400-83075400	Weak transcription	Fetal Brain Male	brain
14	chr10:83074600-83076000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr10:83075400-83076000	Enhancers	Fetal Brain Male	brain
16	chr10:83076000-83076200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr10:83076200-83076600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr10:83076600-83077400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr10:83077400-83078600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr10:83079400-83079600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr10:83117200-83118400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr10:83118400-83120400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr10:83123000-83126600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr10:83125800-83128400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr10:83126600-83126800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr10:83126600-83127600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr10:83126800-83127200	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr10:83146600-83146800	Enhancers	Pancreas	Pancrea
29	chr10:83146800-83147200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr10:83184400-83184800	Enhancers	HUES48 Cell Line	embryonic stem cell
31	chr10:83184400-83184800	Enhancers	Brain Germinal Matrix	brain
32	chr10:83187800-83189200	Enhancers	Liver	Liver
33	chr10:83201400-83201800	Active TSS	H9 Cell Line	embryonic stem cell
34	chr10:83201400-83201800	Active TSS	K562	blood
35	chr10:83204000-83204400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
36	chr10:83204200-83204600	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
37	chr10:83204400-83204600	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
38	chr10:83204600-83205000	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
39	chr10:83210600-83211000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
40	chr10:83231800-83234200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr10:83232200-83233600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
42	chr10:83232600-83233000	Enhancers	H1 Cell Line	embryonic stem cell
43	chr10:83232600-83233800	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
44	chr10:83233200-83233800	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
45	chr10:83241800-83242000	Enhancers	Brain Germinal Matrix	brain
46	chr10:83243600-83244200	Enhancers	Brain Germinal Matrix	brain
47	chr10:83258000-83258600	Enhancers	Fetal Kidney	kidney
48	chr10:83262600-83263000	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
49	chr10:83274200-83275000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr10:83274200-83275200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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