Variant report

Variant	nsv871651
Chromosome Location	chr1:98200719-98365310
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ATF2	chr1:98256657-98257260	GM12878	blood:	n/a	n/a
2	BACH1	chr1:98330283-98330429	H1-hESC	embryonic stem cell:	n/a	n/a
3	BATF	chr1:98256785-98257057	GM12878	blood:	n/a	n/a
4	BATF	chr1:98314987-98315181	GM12878	blood:	n/a	n/a
5	BCLAF1	chr1:98256717-98257173	GM12878	blood:	n/a	n/a
6	BHLHE40	chr1:98286119-98286347	GM12878	blood:	n/a	n/a
7	BHLHE40	chr1:98293557-98293863	GM12878	blood:	n/a	n/a
8	BHLHE40	chr1:98286097-98286281	HepG2	liver:	n/a	n/a
9	BRCA1	chr1:98315427-98316172	Hela-S3	cervix:	n/a	n/a
10	CBX3	chr1:98286063-98286327	HCT-116	colon:	n/a	n/a
11	CEBPB	chr1:98252463-98252539	A549	lung:	n/a	n/a
12	CEBPB	chr1:98244025-98244225	A549	lung:	n/a	chr1:98244134-98244145 chr1:98244136-98244147 chr1:98244134-98244147 chr1:98244136-98244145
13	CEBPB	chr1:98243965-98244299	HepG2	liver:	n/a	chr1:98244134-98244145 chr1:98244136-98244147 chr1:98244134-98244147 chr1:98244136-98244145
14	CEBPB	chr1:98236073-98236275	IMR90	lung:	n/a	n/a
15	CEBPB	chr1:98314089-98314389	Hela-S3	cervix:	n/a	chr1:98314210-98314221
16	CEBPB	chr1:98319163-98319441	Hela-S3	cervix:	n/a	n/a
17	CEBPB	chr1:98353733-98353979	IMR90	lung:	n/a	chr1:98353856-98353867
18	CEBPB	chr1:98314113-98314377	A549	lung:	n/a	chr1:98314210-98314221
19	CEBPB	chr1:98315515-98315882	A549	lung:	n/a	chr1:98315683-98315694
20	CEBPB	chr1:98211520-98211827	IMR90	lung:	n/a	n/a
21	CEBPB	chr1:98338761-98339040	IMR90	lung:	n/a	chr1:98338884-98338895
22	CEBPB	chr1:98299523-98299768	IMR90	lung:	n/a	chr1:98299621-98299632
23	CEBPB	chr1:98299462-98299745	A549	lung:	n/a	chr1:98299621-98299632
24	CEBPB	chr1:98208137-98208487	IMR90	lung:	n/a	chr1:98208316-98208327
25	CEBPB	chr1:98338769-98339043	HepG2	liver:	n/a	chr1:98338884-98338895
26	CEBPB	chr1:98244033-98244278	K562	blood:	n/a	chr1:98244134-98244145 chr1:98244136-98244147 chr1:98244134-98244147 chr1:98244136-98244145
27	CEBPB	chr1:98243986-98244310	IMR90	lung:	n/a	chr1:98244134-98244145 chr1:98244136-98244147 chr1:98244134-98244147 chr1:98244136-98244145
28	CEBPB	chr1:98221656-98222027	IMR90	lung:	n/a	chr1:98221861-98221870
29	CEBPB	chr1:98208142-98208499	A549	lung:	n/a	chr1:98208316-98208327
30	CEBPB	chr1:98208209-98208432	H1-hESC	embryonic stem cell:	n/a	chr1:98208316-98208327
31	CEBPB	chr1:98314085-98314371	HepG2	liver:	n/a	chr1:98314210-98314221
32	CEBPB	chr1:98353680-98353978	HepG2	liver:	n/a	chr1:98353856-98353867
33	CEBPB	chr1:98315505-98315889	MCF-7	breast:	n/a	chr1:98315683-98315694
34	CEBPB	chr1:98353754-98353891	A549	lung:	n/a	chr1:98353856-98353867
35	CEBPB	chr1:98315355-98315986	HCT-116	colon:	n/a	chr1:98315683-98315694
36	CEBPB	chr1:98314053-98314374	IMR90	lung:	n/a	chr1:98314210-98314221
37	CEBPB	chr1:98315460-98315887	A549	lung:	n/a	chr1:98315683-98315694
38	CEBPB	chr1:98315455-98315945	Hela-S3	cervix:	n/a	chr1:98315683-98315694
39	CEBPB	chr1:98299460-98299776	HepG2	liver:	n/a	chr1:98299621-98299632
40	CEBPB	chr1:98288531-98288718	A549	lung:	n/a	n/a
41	CEBPB	chr1:98315336-98316014	A549	lung:	n/a	chr1:98315683-98315694
42	CEBPB	chr1:98315505-98315762	ECC-1	luminal epithelium:	n/a	chr1:98315683-98315694
43	CEBPB	chr1:98228781-98228989	HepG2	liver:	n/a	chr1:98228933-98228942 chr1:98228933-98228942 chr1:98228933-98228942 chr1:98228931-98228942 chr1:98228933-98228942 chr1:98228933-98228944
44	CEBPB	chr1:98315544-98315841	HCT-116	colon:	n/a	chr1:98315683-98315694
45	CEBPB	chr1:98208214-98208462	Hela-S3	cervix:	n/a	chr1:98208316-98208327
46	CEBPB	chr1:98314149-98314250	H1-hESC	embryonic stem cell:	n/a	chr1:98314210-98314221
47	CEBPB	chr1:98315476-98315890	IMR90	lung:	n/a	chr1:98315683-98315694
48	CEBPB	chr1:98208154-98208479	HepG2	liver:	n/a	chr1:98208316-98208327
49	CHD2	chr1:98315502-98315865	Hela-S3	cervix:	n/a	n/a
50	CHD2	chr1:98293520-98293730	GM12878	blood:	n/a	n/a

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr1:98336448-98336498	HMEC	breast:	n/a
2	chr1:98336448-98336498	U87	brain:	n/a
3	chr1:98336448-98336498	GM12892	blood:	n/a
4	chr1:98336448-98336498	Hepatocyte	liver:	n/a
5	chr1:98336448-98336498	PrEC	prostate:	n/a
6	chr1:98336448-98336498	ProgFib	skin:	n/a
7	chr1:98336448-98336498	HCM	heart:	n/a
8	chr1:98336448-98336498	HPAEpiC	pulmonary alveolar:	n/a
9	chr1:98336448-98336498	GM06990	blood:	n/a
10	chr1:98336448-98336498	LNCaP	prostate:	n/a
11	chr1:98336448-98336498	SAEC	small airway:	n/a
12	chr1:98336448-98336498	GM19239	blood:	n/a
13	chr1:98336448-98336498	CMK	blood:	n/a
14	chr1:98336448-98336498	GM12878	blood:	n/a
15	chr1:98336448-98336498	NB4	blood:	n/a
16	chr1:98336448-98336498	MCF-7	breast:	n/a
17	chr1:98336448-98336498	HUVEC	blood vessel:	n/a
18	chr1:98336448-98336498	SK-N-SH	brain:	n/a
19	chr1:98336448-98336498	IMR90	lung:	fetal
20	chr1:98336448-98336498	NH-A	brain:	n/a
21	chr1:98336448-98336498	HRPEpiC	eye:	n/a
22	chr1:98336448-98336498	A549	lung:	n/a
23	chr1:98336448-98336498	HRCEpiC	kidney:	n/a
24	chr1:98336448-98336498	NHBE	bronchial:	n/a
25	chr1:98336448-98336498	AG09309	skin:	n/a
26	chr1:98336448-98336498	T-47D	breast:	n/a
27	chr1:98336448-98336498	SK-N-SH_RA	brain:	n/a
28	chr1:98336448-98336498	HIPEpiC	eye:	n/a
29	chr1:98336448-98336498	AG04450	lung:	fetal
30	chr1:98336448-98336498	AoSMC	blood vessel:	n/a
31	chr1:98336448-98336498	HCT-116	colon:	n/a
32	chr1:98336448-98336498	ovcar-3	ovarian:	n/a
33	chr1:98336448-98336498	AG04449	skin:	fetal
34	chr1:98336448-98336498	MCF10A-Er-Src	breast:	n/a
35	chr1:98336448-98336498	NT2-D1	testis:	n/a
36	chr1:98336448-98336498	PANC-1	pancreas:	n/a
37	chr1:98336448-98336498	NHDF-neo	bronchial:	n/a
38	chr1:98336448-98336498	BJ	skin:	n/a
39	chr1:98336448-98336498	Hela-S3	cervix:	n/a
40	chr1:98336448-98336498	SKMC	muscle:	n/a
41	chr1:98336448-98336498	BE2_C	brain:	n/a
42	chr1:98336448-98336498	ECC-1	luminal epithelium:	n/a
43	chr1:98336448-98336498	HEEpiC	esophagus:	n/a
44	chr1:98336448-98336498	PFSK-1	brain:	n/a
45	chr1:98336448-98336498	HL-60	blood:	n/a
46	chr1:98336448-98336498	HAEpiC	amniotic membrane:	n/a
47	chr1:98336448-98336498	HCF	heart:	n/a
48	chr1:98336448-98336498	HepG2	liver:	n/a
49	chr1:98336448-98336498	Jurkat	blood:	n/a
50	chr1:98336448-98336498	AG09319	gingival:	n/a

No.	Distal block	Cell Line	Cell type
1	chr1:97603745..97604533-chr1:98286034..98286590,2	MCF-7	breast:
2	chr1:98268724..98270842-chr1:98273200..98275102,2	K562	blood:
3	chr1:98215254..98218184-chr1:98219378..98221906,2	K562	blood:
4	chr1:98355629..98357274-chr1:98363279..98366044,2	K562	blood:
5	chr1:98355629..98357274-chr1:98363279..98366044,2	K562	blood:
6	chr1:98276910..98277431-chr11:65769065..65769690,2	Hela-S3	cervix:
7	chr1:98215254..98218184-chr1:98219378..98221906,2	K562	blood:
8	chr1:98360000..98361724-chr1:98365980..98368297,2	K562	blood:
9	chr1:98355629..98357546-chr1:98364329..98366044,2	K562	blood:
10	chr1:98355629..98357546-chr1:98364329..98366044,2	K562	blood:
11	chr1:98232688..98235381-chr1:98240146..98242077,2	MCF-7	breast:
12	chr1:98228606..98230942-chr1:98231366..98234177,2	K562	blood:
13	chr1:98228606..98230942-chr1:98231366..98234177,2	K562	blood:
14	chr1:98268724..98270842-chr1:98273200..98275102,2	K562	blood:
15	chr1:98277100..98278650-chr1:98293087..98294811,2	K562	blood:
16	chr1:98277100..98278650-chr1:98293087..98294811,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-SNX7-2	chr1:98262771-98262851	NR_046591
2	lnc-SNX7-2	chr1:98263024-98263607	NR_046591
3	lnc-LPPR5.1-4	chr1:98233060-98233679	l_97_chr1:98213107-98217461
4	lnc-LPPR5.1-4	chr1:98213403-98213506	l_97_chr1:98213107-98217461
5	lnc-LPPR5.1-4	chr1:98217399-98217461	l_97_chr1:98213107-98217461
6	lnc-SNX7-2	chr1:98262477-98262628	NR_046591
7	lnc-SNX7-11	chr1:98321131-98322381	NONHSAT004723
8	lnc-LPPR5.1-4	chr1:98213108-98213244	l_97_chr1:98213107-98217461
9	lnc-SNX7-2	chr1:98262477-98262851	ENSG00000235777.1
10	lnc-SNX7-2	chr1:98263024-98263622	ENSG00000235777.1
11	lnc-LPPR5.1-4	chr1:98227401-98227713	l_97_chr1:98213107-98217461
12	lnc-SNX7-2	chr1:98262771-98262851	ENSG00000235777.1
13	lnc-SNX7-12	chr1:98240225-98240582	NONHSAT004719
14	lnc-LPPR5.1-4	chr1:98229394-98229587	l_97_chr1:98213107-98217461
15	lnc-SNX7-2	chr1:98262521-98262628	ENSG00000235777.1
16	lnc-SNX7-2	chr1:98263024-98263424	ENSG00000235777.1

Variant related genes	Relation type
ENSG00000270911	TF binding region
ENSG00000230718	TF binding region
DPYD-AS2	TF binding region
ENSG00000270911	CpG island
ENSG00000230718	CpG island
DPYD-AS2	CpG island
ENSG00000175376	chromatin interactions
ENSG00000175334	chromatin interactions
ENSG00000230718	chromatin interactions
FXR1	miRNA target sites

Extended variants
information (count: 5712 )
Associated
traits (count: 104 )

Variant overlapped rSNPs/rCNVs (count:5712 , 50 per page) page: 1 2 3 4 5 6 7 ... 115

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs6683957	chr1:98200719-98200720	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
2	rs573450096	chr1:98200747-98200748	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs536039301	chr1:98200750-98200751	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs555714927	chr1:98200845-98200846	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs184052650	chr1:98200880-98200881	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs556847533	chr1:98200927-98200928	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs564061215	chr1:98200948-98200949	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs112526027	chr1:98201051-98201052	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs375376499	chr1:98201074-98201075	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs71657276	chr1:98201075-98201076	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs376553650	chr1:98201076-98201077	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs188548478	chr1:98201117-98201118	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs539906645	chr1:98201122-98201123	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs559837275	chr1:98201161-98201162	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs79439995	chr1:98201189-98201190	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs562589447	chr1:98201216-98201217	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs5776378	chr1:98201242-98201243	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs12139338	chr1:98201283-98201284	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
19	rs571700404	chr1:98201333-98201334	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs551398422	chr1:98201337-98201338	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs570826887	chr1:98201347-98201348	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs548564214	chr1:98201362-98201363	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs539866685	chr1:98201554-98201555	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs375558270	chr1:98201577-98201578	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs573755976	chr1:98201624-98201625	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs527893424	chr1:98201708-98201709	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs547540296	chr1:98201789-98201790	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs547047172	chr1:98201791-98201792	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs6695791	chr1:98201803-98201804	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs151160275	chr1:98201830-98201831	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs193166417	chr1:98201840-98201841	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs555923429	chr1:98201843-98201844	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs575749994	chr1:98201861-98201862	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs79161819	chr1:98201870-98201871	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs140115195	chr1:98201879-98201880	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs577189664	chr1:98201928-98201929	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs542587271	chr1:98201960-98201961	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs148803098	chr1:98201961-98201962	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs559758307	chr1:98201962-98201963	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs556583591	chr1:98201987-98201988	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs184182920	chr1:98202043-98202044	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs12354275	chr1:98202051-98202052	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
43	rs60470684	chr1:98202066-98202067	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
44	rs187093199	chr1:98202072-98202073	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs559586726	chr1:98202097-98202098	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs569170215	chr1:98202115-98202116	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs370317971	chr1:98202117-98202118	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs531424046	chr1:98202132-98202133	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs4970727	chr1:98202142-98202143	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
50	rs545414058	chr1:98202151-98202152	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:104)

Disease	PMID	Source
Wilms tumour	21544195	CNVD
Coronary Disease	20032323	CNVD
Prostate cancer	21965145	CNVD
Glioblastoma multiforme	21080181	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Stargardt''s disease	17277736	CNVD
Neuroblastoma	17897457	CNVD
Uveal melanoma	21693616	CNVD
Cancer	21637783	CNVD
Colorectal cancer	20709793	CNVD
Ewing''s sarcoma	21437220	CNVD
Neuroblastoma	21484798	CNVD
Non-syndromic sensorineural hearing loss	22290220	CNVD
Liposarcoma	21253554	CNVD
Breast cancer	21264507	CNVD
Acute myeloid leukemia	16864856	CNVD
Astrocytoma	17387387	CNVD
Cancer	21499728	CNVD
Glioblastoma multiforme	17387387	CNVD
Oligodendroglial tumors	17285580	CNVD
Papillary thyroid carcinoma	21436994	CNVD
Neuroblastoma	17535989	CNVD
Pheochromocytoma	17535989	CNVD
Prostate cancer	16705090	CNVD
Astrocytoma	17934521	CNVD
Colorectal cancer	19359472	CNVD
Neuroblastoma	18664255	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Multiple myeloma	17077331	CNVD
Gastrointestinal stromal cancer	19259404	CNVD
Gastrointestinal stromal cancer	20470368	CNVD
Gastrointestinal stromal cancer	17535989	CNVD
Neuroblastoma	17533364	CNVD
Paraganglioma	17535989	CNVD
Pulmonary chondroma	17535989	CNVD
Myofibroblastic sarcoma	19369631	CNVD
Breast cancer	17603634	CNVD
Esophageal squamous carcinoma	21637470	CNVD
HIV/AIDS	22032296	CNVD
Schizophrenia	19415332	CNVD
Non-syndromic sensorineural hearing loss	21030649	CNVD
Thoracic aortic aneurysm	21092924	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Autism	22495311	CNVD
Non-small cell lung cancer	21385341	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Chordoma	21602918	CNVD
Acute lymphoblastic leukemia	17443227	CNVD
Melanoma	18172304	CNVD
Multiple myeloma	16461302	CNVD
Cancer	21129771	CNVD
Autosomal dominant nocturnal frontal lobe epilepsy	18472482	CNVD
Hirschsprung''s Disease	21712996	CNVD
Non-small cell lung cancer	20864512	CNVD
Non-syndromic sensorineural hearing loss	15273396	CNVD
Thrombocytopenia-absent radius syndrome	21933853	CNVD
Psychiatric disorder	22848183	CNVD
Diffuse large b-cell lymphoma	18287131	CNVD
Hepatocellular carcinoma	16750200	CNVD
Burkitt''s lymphoma	18698080	CNVD
Breast cancer	20409316	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Lung cancer	18438408	CNVD
Splenic marginal zone lymphoma	21957467	CNVD
Breast cancer	17393978	CNVD
Medulloblastoma	21979893	CNVD
Cervical cancer	21062161	CNVD
Cancer	21183584	CNVD
Breast cancer	21785460	CNVD
Breast cancer	21364760	CNVD
Rett syndrome	21593744	CNVD
Prostate cancer	16573809	CNVD
Breast cancer	16608533	CNVD
Ovarian cancer	21720365	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Intellectual disability	22102821	CNVD
Cancer	20164919	CNVD
Ewing''s sarcoma	17952124	CNVD
Cancer	22429812	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Breast cancer	17133270	CNVD
Malignant mesothelioma	18160781	CNVD
Pleural malignant mesothelioma	18160781	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Esophageal adenocarcinoma	18820669	CNVD
small cell lung cancer	20016488	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Glioblastoma multiforme	21922591	CNVD
Autism	17483303	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Myelofibrosis	22110671	CNVD
Malignant fibrous histiocytomas	21085701	CNVD
Intestinal disease	21956041	CNVD
Carcinoma ex pleomorphic adenoma	18828159	CNVD
Gastric cancer	16891809	CNVD
Schizophrenia	17879154	CNVD
Mental retardation	17124404	CNVD
Intestinal disease	17828263	CNVD
Malignant melanoma	17260012	CNVD
lymphocytic leukemia	21291569	CNVD
Non-syndromic sensorineural hearing loss	21987784	CNVD
Non-syndromic sensorineural hearing loss	19587683	CNVD
Breast cancer	22522925	CNVD
early-passage human iPS cells	21368824	CNVD

Chromatin state (count:1332 , 50 per page) page: 1 2 3 4 5 6 7 ... 27

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:98177200-98254600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
2	chr1:98179000-98220800	Weak transcription	Psoas Muscle	Psoas
3	chr1:98181400-98204400	Weak transcription	Osteobl	bone
4	chr1:98183600-98279600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr1:98186200-98220200	Weak transcription	Primary T cells from cord blood	blood
6	chr1:98187200-98203000	Weak transcription	Liver	Liver
7	chr1:98187200-98206000	Weak transcription	Primary hematopoietic stem cells	blood
8	chr1:98187200-98207000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
9	chr1:98187200-98208400	Weak transcription	Primary T helper cells fromperipheralblood	blood
10	chr1:98187200-98217200	Weak transcription	Primary B cells from cord blood	blood
11	chr1:98187200-98243400	Weak transcription	Primary T helper cells PMA-I stimulated	--
12	chr1:98187400-98203800	Weak transcription	Primary monocytes fromperipheralblood	blood
13	chr1:98190200-98205000	Weak transcription	HSMM	muscle
14	chr1:98193000-98205600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr1:98193600-98202200	Weak transcription	Monocytes-CD14+_RO01746	blood
16	chr1:98193600-98203600	Weak transcription	Primary neutrophils fromperipheralblood	blood
17	chr1:98198800-98224400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr1:98199200-98205000	Weak transcription	NHDF-Ad	bronchial
19	chr1:98200800-98231200	Weak transcription	Dnd41	blood
20	chr1:98201800-98204600	Weak transcription	Fetal Intestine Large	intestine
21	chr1:98201800-98205200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr1:98202000-98214400	Weak transcription	Fetal Lung	lung
23	chr1:98202200-98208800	Strong transcription	Monocytes-CD14+_RO01746	blood
24	chr1:98202400-98217800	Weak transcription	Primary T cells fromperipheralblood	blood
25	chr1:98202800-98206600	Weak transcription	Aorta	Aorta
26	chr1:98203000-98204200	Strong transcription	Liver	Liver
27	chr1:98203400-98205000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr1:98203600-98204000	Strong transcription	Primary neutrophils fromperipheralblood	blood
29	chr1:98203800-98204200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
30	chr1:98203800-98206800	Strong transcription	Primary monocytes fromperipheralblood	blood
31	chr1:98204000-98204200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr1:98204000-98204200	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
33	chr1:98204000-98204200	Enhancers	Brain Angular Gyrus	brain
34	chr1:98204000-98204200	ZNF genes & repeats	Esophagus	oesophagus
35	chr1:98204000-98256600	Weak transcription	Primary neutrophils fromperipheralblood	blood
36	chr1:98204200-98205800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
37	chr1:98204200-98206400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
38	chr1:98204200-98206400	Weak transcription	Brain Angular Gyrus	brain
39	chr1:98204200-98206600	Weak transcription	Esophagus	oesophagus
40	chr1:98204200-98224200	Weak transcription	Liver	Liver
41	chr1:98204200-98257000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
42	chr1:98204400-98206000	Enhancers	Osteobl	bone
43	chr1:98205000-98205600	Enhancers	HSMM	muscle
44	chr1:98205000-98205800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr1:98205000-98206000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
46	chr1:98205000-98206000	Enhancers	Muscle Satellite Cultured Cells	--
47	chr1:98205000-98206400	Enhancers	NHDF-Ad	bronchial
48	chr1:98205200-98206000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
49	chr1:98205200-98206800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
50	chr1:98205200-98206800	Enhancers	NHLF	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links