Variant report

Variant	nsv871657
Chromosome Location	chr1:103427381-103528128
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr1:103502292-103502351	K562	blood:	n/a	n/a
2	BRCA1	chr1:103436155-103436294	Hela-S3	cervix:	n/a	n/a
3	CEBPB	chr1:103519688-103519996	A549	lung:	n/a	chr1:103519829-103519842 chr1:103519831-103519840 chr1:103519831-103519840 chr1:103519831-103519840
4	CEBPB	chr1:103463557-103463788	A549	lung:	n/a	chr1:103463691-103463704 chr1:103463691-103463702 chr1:103463691-103463702 chr1:103463712-103463725 chr1:103463691-103463704
5	CEBPB	chr1:103457305-103457616	HepG2	liver:	n/a	chr1:103457464-103457475 chr1:103457465-103457476
6	CEBPB	chr1:103522064-103522370	HepG2	liver:	n/a	chr1:103522213-103522224
7	CEBPB	chr1:103519671-103520003	HepG2	liver:	n/a	chr1:103519829-103519842 chr1:103519831-103519840 chr1:103519831-103519840 chr1:103519831-103519840
8	CEBPB	chr1:103462260-103462460	HepG2	liver:	n/a	chr1:103462355-103462366 chr1:103462357-103462368
9	CEBPB	chr1:103457286-103457644	H1-hESC	embryonic stem cell:	n/a	chr1:103457464-103457475 chr1:103457465-103457476
10	CEBPB	chr1:103519664-103520007	IMR90	lung:	n/a	chr1:103519829-103519842 chr1:103519831-103519840 chr1:103519831-103519840 chr1:103519831-103519840
11	CEBPB	chr1:103519790-103519887	H1-hESC	embryonic stem cell:	n/a	chr1:103519829-103519842 chr1:103519831-103519840 chr1:103519831-103519840 chr1:103519831-103519840
12	CEBPB	chr1:103522115-103522329	IMR90	lung:	n/a	chr1:103522213-103522224
13	CEBPB	chr1:103468048-103468248	HepG2	liver:	n/a	chr1:103468160-103468173 chr1:103468074-103468085 chr1:103468076-103468085
14	CEBPB	chr1:103519692-103519989	ECC-1	luminal epithelium:	n/a	chr1:103519829-103519842 chr1:103519831-103519840 chr1:103519831-103519840 chr1:103519831-103519840
15	CEBPB	chr1:103489916-103490117	HepG2	liver:	n/a	chr1:103489991-103490002 chr1:103489991-103490000
16	CTCF	chr1:103436140-103436290	HCFaa	heart:	n/a	chr1:103436238-103436256 chr1:103436240-103436253 chr1:103436243-103436251 chr1:103436239-103436255 chr1:103436233-103436254
17	CTCF	chr1:103436112-103436394	GM10248	blood:	n/a	chr1:103436238-103436256 chr1:103436240-103436253 chr1:103436243-103436251 chr1:103436239-103436255 chr1:103436233-103436254
18	CTCF	chr1:103436243-103436369	MCF-7	breast:	n/a	chr1:103436243-103436251
19	CTCF	chr1:103435960-103436571	A549	lung:	n/a	chr1:103436238-103436256 chr1:103436240-103436253 chr1:103436243-103436251 chr1:103436239-103436255 chr1:103436233-103436254
20	CTCF	chr1:103436180-103436330	NHEK	skin:	n/a	chr1:103436238-103436256 chr1:103436240-103436253 chr1:103436243-103436251 chr1:103436239-103436255 chr1:103436233-103436254
21	CTCF	chr1:103436160-103436310	AG04449	skin:	n/a	chr1:103436238-103436256 chr1:103436240-103436253 chr1:103436243-103436251 chr1:103436239-103436255 chr1:103436233-103436254
22	CTCF	chr1:103436220-103436370	Hela-S3	cervix:	n/a	chr1:103436238-103436256 chr1:103436240-103436253 chr1:103436243-103436251 chr1:103436239-103436255 chr1:103436233-103436254
23	CTCF	chr1:103436180-103436330	GM12865	blood:	n/a	chr1:103436238-103436256 chr1:103436240-103436253 chr1:103436243-103436251 chr1:103436239-103436255 chr1:103436233-103436254
24	CTCF	chr1:103436180-103436330	GM12873	blood:	n/a	chr1:103436238-103436256 chr1:103436240-103436253 chr1:103436243-103436251 chr1:103436239-103436255 chr1:103436233-103436254
25	CTCF	chr1:103436160-103436310	GM12866	blood:	n/a	chr1:103436238-103436256 chr1:103436240-103436253 chr1:103436243-103436251 chr1:103436239-103436255 chr1:103436233-103436254
26	CTCF	chr1:103436140-103436290	BE2_C	brain:	n/a	chr1:103436238-103436256 chr1:103436240-103436253 chr1:103436243-103436251 chr1:103436239-103436255 chr1:103436233-103436254
27	CTCF	chr1:103436160-103436310	AG09319	gingival:	n/a	chr1:103436238-103436256 chr1:103436240-103436253 chr1:103436243-103436251 chr1:103436239-103436255 chr1:103436233-103436254
28	CTCF	chr1:103436120-103436270	HVMF	connective:	n/a	chr1:103436238-103436256 chr1:103436240-103436253 chr1:103436243-103436251 chr1:103436239-103436255 chr1:103436233-103436254
29	CTCF	chr1:103436220-103436370	NHEK	skin:	n/a	chr1:103436238-103436256 chr1:103436240-103436253 chr1:103436243-103436251 chr1:103436239-103436255 chr1:103436233-103436254
30	CTCF	chr1:103436140-103436290	HEK293	kidney:	n/a	chr1:103436238-103436256 chr1:103436240-103436253 chr1:103436243-103436251 chr1:103436239-103436255 chr1:103436233-103436254
31	CTCF	chr1:103436180-103436330	GM12867	blood:	n/a	chr1:103436238-103436256 chr1:103436240-103436253 chr1:103436243-103436251 chr1:103436239-103436255 chr1:103436233-103436254
32	CTCF	chr1:103436140-103436290	AG09309	skin:	n/a	chr1:103436238-103436256 chr1:103436240-103436253 chr1:103436243-103436251 chr1:103436239-103436255 chr1:103436233-103436254
33	CTCF	chr1:103436130-103436336	HepG2	liver:	n/a	chr1:103436238-103436256 chr1:103436240-103436253 chr1:103436243-103436251 chr1:103436239-103436255 chr1:103436233-103436254
34	CTCF	chr1:103436052-103436458	GM12878	blood:	n/a	chr1:103436238-103436256 chr1:103436240-103436253 chr1:103436243-103436251 chr1:103436239-103436255 chr1:103436233-103436254
35	CTCF	chr1:103436160-103436310	HUVEC	blood vessel:	n/a	chr1:103436238-103436256 chr1:103436240-103436253 chr1:103436243-103436251 chr1:103436239-103436255 chr1:103436233-103436254
36	CTCF	chr1:103436160-103436310	HPF	lung:	n/a	chr1:103436238-103436256 chr1:103436240-103436253 chr1:103436243-103436251 chr1:103436239-103436255 chr1:103436233-103436254
37	CTCF	chr1:103436140-103436290	HRE	kidney:	n/a	chr1:103436238-103436256 chr1:103436240-103436253 chr1:103436243-103436251 chr1:103436239-103436255 chr1:103436233-103436254
38	CTCF	chr1:103436140-103436290	AG04450	lung:	n/a	chr1:103436238-103436256 chr1:103436240-103436253 chr1:103436243-103436251 chr1:103436239-103436255 chr1:103436233-103436254
39	CTCF	chr1:103436140-103436290	GM12868	blood:	n/a	chr1:103436238-103436256 chr1:103436240-103436253 chr1:103436243-103436251 chr1:103436239-103436255 chr1:103436233-103436254
40	CTCF	chr1:103436171-103436402	ProgFib	skin:	n/a	chr1:103436238-103436256 chr1:103436240-103436253 chr1:103436243-103436251 chr1:103436239-103436255 chr1:103436233-103436254
41	CTCF	chr1:103436415-103436416	GM19238	blood:	n/a	n/a
42	CTCF	chr1:103436188-103436416	GM12892	blood:	n/a	chr1:103436238-103436256 chr1:103436240-103436253 chr1:103436243-103436251 chr1:103436239-103436255 chr1:103436233-103436254
43	CTCF	chr1:103435994-103436641	SK-N-SH	brain:	n/a	chr1:103436238-103436256 chr1:103436240-103436253 chr1:103436243-103436251 chr1:103436239-103436255 chr1:103436233-103436254
44	CTCF	chr1:103436200-103436350	GM12866	blood:	n/a	chr1:103436238-103436256 chr1:103436240-103436253 chr1:103436243-103436251 chr1:103436239-103436255 chr1:103436233-103436254
45	CTCF	chr1:103436180-103436330	WERI-Rb-1	eye:	n/a	chr1:103436238-103436256 chr1:103436240-103436253 chr1:103436243-103436251 chr1:103436239-103436255 chr1:103436233-103436254
46	CTCF	chr1:103436094-103436352	A549	lung:	n/a	chr1:103436238-103436256 chr1:103436240-103436253 chr1:103436243-103436251 chr1:103436239-103436255 chr1:103436233-103436254
47	CTCF	chr1:103436140-103436290	HEEpiC	esophagus:	n/a	chr1:103436238-103436256 chr1:103436240-103436253 chr1:103436243-103436251 chr1:103436239-103436255 chr1:103436233-103436254
48	CTCF	chr1:103436479-103436542	GM13976	blood:	n/a	n/a
49	CTCF	chr1:103436123-103436326	T-47D	breast:	n/a	chr1:103436238-103436256 chr1:103436240-103436253 chr1:103436243-103436251 chr1:103436239-103436255 chr1:103436233-103436254
50	CTCF	chr1:103436180-103436330	GM12864	blood:	n/a	chr1:103436238-103436256 chr1:103436240-103436253 chr1:103436243-103436251 chr1:103436239-103436255 chr1:103436233-103436254

No.	Distal block	Cell Line	Cell type
1	chr1:103426177..103428144-chr1:103433364..103435643,2	K562	blood:
2	chr1:103426177..103428144-chr1:103433364..103435643,2	K562	blood:
3	chr1:103435891..103438484-chr1:103439465..103441994,2	K562	blood:
4	chr1:103016225..103017019-chr1:103436153..103436688,2	MCF-7	breast:
5	chr1:103471408..103474127-chr1:103476869..103478860,2	MCF-7	breast:
6	chr1:103259174..103259873-chr1:103435676..103436665,2	MCF-7	breast:
7	chr1:103435891..103438484-chr1:103439465..103441994,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-AMY1B-5	chr1:103470000-103470037	NONHSAT004880
2	lnc-AMY1B-5	chr1:103467481-103467525	NONHSAT004880
3	lnc-AMY1B-5	chr1:103466993-103467187	NONHSAT004880
4	lnc-AMY1B-5	chr1:103468303-103468347	NONHSAT004880
5	lnc-AMY1B-5	chr1:103467984-103468037	NONHSAT004880

Variant related genes	Relation type
COL11A1	TF binding region
ENSG00000060718	chromatin interactions
FOXO1	miRNA target sites
NHLRC3	miRNA target sites
TMPO	miRNA target sites
MBD4	miRNA target sites

Extended variants
information (count: 4238 )
Associated
traits (count: 102 )

Variant overlapped rSNPs/rCNVs (count:4238 , 50 per page) page: 1 2 3 4 5 6 7 ... 85

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs1012282	chr1:103427381-103427382	Weak transcription Strong transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
2	rs371621900	chr1:103427385-103427386	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs116365261	chr1:103427391-103427392	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs369270480	chr1:103427401-103427402	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs1012281	chr1:103427407-103427408	Weak transcription Strong transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
6	rs377647050	chr1:103427415-103427416	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs539284752	chr1:103427443-103427444	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs140230238	chr1:103427449-103427450	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs149000575	chr1:103427456-103427457	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs551254277	chr1:103427499-103427500	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs370020977	chr1:103427505-103427506	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs200218551	chr1:103427522-103427523	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs188434117	chr1:103427605-103427606	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs376266986	chr1:103427610-103427611	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs555022711	chr1:103427613-103427614	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs376777597	chr1:103427620-103427621	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs573602553	chr1:103427692-103427693	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs534398998	chr1:103427720-103427721	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs546555674	chr1:103427728-103427729	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs554196989	chr1:103427761-103427762	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs201595181	chr1:103427762-103427763	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs377320274	chr1:103427770-103427771	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs143606220	chr1:103427813-103427814	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs578210032	chr1:103427815-103427816	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs371101754	chr1:103427842-103427843	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs199742223	chr1:103427843-103427844	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs55682104	chr1:103427844-103427845	Weak transcription Strong transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
28	rs370726653	chr1:103427850-103427851	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs374238379	chr1:103427852-103427853	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs367844982	chr1:103427858-103427859	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs11164645	chr1:103427866-103427867	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs114841923	chr1:103427947-103427948	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs147228230	chr1:103427949-103427950	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs528518451	chr1:103427986-103427987	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs546674591	chr1:103427992-103427993	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs4353117	chr1:103427994-103427995	Weak transcription Strong transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
37	rs139616417	chr1:103427997-103427998	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs551115205	chr1:103428029-103428030	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs193051837	chr1:103428081-103428082	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs536913503	chr1:103428114-103428115	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs370614034	chr1:103428135-103428136	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs548781633	chr1:103428143-103428144	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs184000455	chr1:103428149-103428150	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs372765554	chr1:103428187-103428188	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs201141572	chr1:103428196-103428197	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs371813445	chr1:103428222-103428223	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs368868551	chr1:103428257-103428258	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs1051072	chr1:103428269-103428270	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs1051071	chr1:103428277-103428278	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs375205348	chr1:103428279-103428280	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:102)

Disease	PMID	Source
Wilms tumour	21544195	CNVD
Coronary Disease	20032323	CNVD
Prostate cancer	21965145	CNVD
Glioblastoma multiforme	21080181	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Stargardt''s disease	17277736	CNVD
Neuroblastoma	17897457	CNVD
Uveal melanoma	21693616	CNVD
Cancer	21637783	CNVD
Colorectal cancer	20709793	CNVD
Ewing''s sarcoma	21437220	CNVD
Neuroblastoma	21484798	CNVD
Non-syndromic sensorineural hearing loss	22290220	CNVD
Liposarcoma	21253554	CNVD
Breast cancer	21264507	CNVD
Acute myeloid leukemia	16864856	CNVD
Astrocytoma	17387387	CNVD
Cancer	21499728	CNVD
Glioblastoma multiforme	17387387	CNVD
Oligodendroglial tumors	17285580	CNVD
Papillary thyroid carcinoma	21436994	CNVD
Neuroblastoma	17535989	CNVD
Pheochromocytoma	17535989	CNVD
Prostate cancer	16705090	CNVD
Astrocytoma	17934521	CNVD
Colorectal cancer	19359472	CNVD
Neuroblastoma	18664255	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Multiple myeloma	17077331	CNVD
Gastrointestinal stromal cancer	19259404	CNVD
Gastrointestinal stromal cancer	20470368	CNVD
Gastrointestinal stromal cancer	17535989	CNVD
Neuroblastoma	17533364	CNVD
Paraganglioma	17535989	CNVD
Pulmonary chondroma	17535989	CNVD
Myofibroblastic sarcoma	19369631	CNVD
Breast cancer	17603634	CNVD
Esophageal squamous carcinoma	21637470	CNVD
HIV/AIDS	22032296	CNVD
Schizophrenia	19415332	CNVD
Non-syndromic sensorineural hearing loss	21030649	CNVD
Thoracic aortic aneurysm	21092924	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Autism	22495311	CNVD
Non-small cell lung cancer	21385341	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Chordoma	21602918	CNVD
Acute lymphoblastic leukemia	17443227	CNVD
Melanoma	18172304	CNVD
Multiple myeloma	16461302	CNVD
Cancer	21129771	CNVD
Autosomal dominant nocturnal frontal lobe epilepsy	18472482	CNVD
Hirschsprung''s Disease	21712996	CNVD
Non-small cell lung cancer	20864512	CNVD
Non-syndromic sensorineural hearing loss	15273396	CNVD
Thrombocytopenia-absent radius syndrome	21933853	CNVD
Psychiatric disorder	22848183	CNVD
Diffuse large b-cell lymphoma	18287131	CNVD
Hepatocellular carcinoma	16750200	CNVD
Burkitt''s lymphoma	18698080	CNVD
Breast cancer	20409316	CNVD
Splenic marginal zone lymphoma	21957467	CNVD
Breast cancer	17393978	CNVD
Medulloblastoma	21979893	CNVD
Cervical cancer	21062161	CNVD
Cancer	21183584	CNVD
Lung cancer	18438408	CNVD
Breast cancer	21785460	CNVD
Breast cancer	21364760	CNVD
Rett syndrome	21593744	CNVD
Prostate cancer	16573809	CNVD
Breast cancer	16608533	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Ovarian cancer	21720365	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Intellectual disability	22102821	CNVD
Cancer	20164919	CNVD
Ewing''s sarcoma	17952124	CNVD
Cancer	22429812	CNVD
Malignant mesothelioma	18160781	CNVD
Pleural malignant mesothelioma	18160781	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Esophageal adenocarcinoma	18820669	CNVD
small cell lung cancer	20016488	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Glioblastoma multiforme	21922591	CNVD
Autism	17483303	CNVD
Intestinal disease	21956041	CNVD
Carcinoma ex pleomorphic adenoma	18828159	CNVD
Schizophrenia	17879154	CNVD
Mental retardation	17124404	CNVD
Intestinal disease	17828263	CNVD
lymphocytic leukemia	21291569	CNVD
Colorectal cancer	16774939	CNVD
Myelofibrosis	22110671	CNVD
Lung adenocarcinoma	17086460	CNVD
Immune disease	21076436	CNVD
Immune disease	21042300	CNVD
Lung cancer	17086460	CNVD
Gastric cancer	16891809	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD

Chromatin state (count:209 , 50 per page) page: 1 2 3 4 5

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:103369600-103498600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr1:103386200-103482000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr1:103400200-103444200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr1:103400200-103462000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr1:103400800-103444200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr1:103405800-103444200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr1:103415800-103485200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr1:103417000-103429200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr1:103421400-103429800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr1:103423000-103468200	Weak transcription	HSMMtube	muscle
11	chr1:103423800-103476000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr1:103424400-103435200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr1:103424600-103432200	Weak transcription	Fetal Heart	heart
14	chr1:103424800-103429200	Strong transcription	Cortex derived primary cultured neurospheres	brain
15	chr1:103425000-103478000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
16	chr1:103426000-103427400	Strong transcription	NH-A	brain
17	chr1:103426600-103428000	Strong transcription	HUES64 Cell Line	embryonic stem cell
18	chr1:103427000-103427600	Enhancers	Brain Germinal Matrix	brain
19	chr1:103427000-103451400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr1:103427400-103452400	Weak transcription	NH-A	brain
21	chr1:103428000-103435000	Weak transcription	HUES64 Cell Line	embryonic stem cell
22	chr1:103429200-103430200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr1:103429200-103433200	Weak transcription	Cortex derived primary cultured neurospheres	brain
24	chr1:103429800-103432200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr1:103430200-103440600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr1:103432200-103432600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
27	chr1:103432200-103432600	Enhancers	Fetal Heart	heart
28	chr1:103432600-103434600	Weak transcription	HUES48 Cell Line	embryonic stem cell
29	chr1:103432600-103434600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr1:103432600-103457400	Weak transcription	Fetal Heart	heart
31	chr1:103433200-103433800	Strong transcription	Cortex derived primary cultured neurospheres	brain
32	chr1:103433800-103442800	Weak transcription	Cortex derived primary cultured neurospheres	brain
33	chr1:103434600-103435200	Enhancers	iPS-20b Cell Line	embryonic stem cell
34	chr1:103434600-103435400	Enhancers	HUES48 Cell Line	embryonic stem cell
35	chr1:103434600-103440800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
36	chr1:103434800-103435400	Enhancers	iPS-18 Cell Line	embryonic stem cell
37	chr1:103435000-103435400	Strong transcription	HUES64 Cell Line	embryonic stem cell
38	chr1:103435200-103442400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
39	chr1:103435400-103452200	Weak transcription	HUES64 Cell Line	embryonic stem cell
40	chr1:103435800-103446200	Weak transcription	HSMM	muscle
41	chr1:103440600-103444200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
42	chr1:103440800-103443000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
43	chr1:103442400-103445000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
44	chr1:103442600-103453200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
45	chr1:103442800-103446800	Strong transcription	Cortex derived primary cultured neurospheres	brain
46	chr1:103443000-103445400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
47	chr1:103444200-103444600	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
48	chr1:103444200-103445000	Strong transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
49	chr1:103444200-103445000	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
50	chr1:103444200-103446800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links