No. |
Variant name |
Chromosome position |
Chromatin state |
Related regulatory elements |
Target genes |
Extended variants |
Associated traits |
1 |
rs2298906 |
chr1:169538603-169538604 |
Enhancers Strong transcription Weak transcription
|
n/a
|
n/a
|
LD-proxies of rSNPOverlapped rCNV
|
n/a
|
2 |
rs145874457 |
chr1:169538651-169538652 |
Enhancers Strong transcription Weak transcription
|
n/a
|
n/a
|
Overlapped CNVs
|
n/a
|
3 |
rs138482806 |
chr1:169538719-169538720 |
Enhancers Strong transcription Weak transcription
|
n/a
|
n/a
|
Overlapped CNVs
|
n/a
|
4 |
rs538429864 |
chr1:169538829-169538830 |
Enhancers Strong transcription Weak transcription Flanking Active TSS
|
n/a
|
n/a
|
Overlapped CNVs
|
n/a
|
5 |
rs116985281 |
chr1:169538838-169538839 |
Enhancers Strong transcription Weak transcription Flanking Active TSS
|
n/a
|
n/a
|
Overlapped CNVs
|
n/a
|
6 |
rs2298905 |
chr1:169538842-169538843 |
Enhancers Strong transcription Weak transcription Flanking Active TSS
|
n/a
|
n/a
|
LD-proxies of rSNPOverlapped rCNV
|
mRNA abundance
|
7 |
rs540500941 |
chr1:169538854-169538855 |
Enhancers Strong transcription Weak transcription Flanking Active TSS
|
n/a
|
n/a
|
Overlapped CNVs
|
n/a
|
8 |
rs181482615 |
chr1:169538865-169538866 |
Enhancers Strong transcription Weak transcription Flanking Active TSS
|
n/a
|
n/a
|
Overlapped CNVs
|
n/a
|
9 |
rs186015872 |
chr1:169538963-169538964 |
Enhancers Strong transcription Weak transcription Flanking Active TSS
|
n/a
|
n/a
|
Overlapped CNVs
|
n/a
|
10 |
rs544085828 |
chr1:169538970-169538971 |
Enhancers Strong transcription Weak transcription Flanking Active TSS
|
n/a
|
n/a
|
Overlapped CNVs
|
n/a
|
11 |
rs142911977 |
chr1:169539000-169539001 |
Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent Enhancer
|
n/a
|
n/a
|
Overlapped CNVs
|
n/a
|
12 |
rs532912689 |
chr1:169539094-169539095 |
Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent Enhancer
|
n/a
|
n/a
|
Overlapped CNVs
|
n/a
|
13 |
rs199899824 |
chr1:169539129-169539130 |
Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent Enhancer
|
n/a
|
n/a
|
Overlapped CNVs
|
n/a
|
14 |
rs7528914 |
chr1:169539133-169539134 |
Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent Enhancer
|
n/a
|
n/a
|
LD-proxies of rSNPOverlapped rCNV
|
n/a
|
15 |
rs559683152 |
chr1:169539223-169539224 |
Active TSS Strong transcription Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer
|
n/a
|
n/a
|
Overlapped CNVs
|
n/a
|
16 |
rs527310444 |
chr1:169539258-169539259 |
Active TSS Strong transcription Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer
|
n/a
|
n/a
|
Overlapped CNVs
|
n/a
|
17 |
rs549216233 |
chr1:169539261-169539262 |
Active TSS Strong transcription Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer
|
n/a
|
n/a
|
Overlapped CNVs
|
n/a
|
18 |
rs150663876 |
chr1:169539270-169539271 |
Active TSS Strong transcription Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer
|
n/a
|
n/a
|
Overlapped CNVs
|
n/a
|
19 |
rs9332542 |
chr1:169539283-169539284 |
Active TSS Strong transcription Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer
|
n/a
|
n/a
|
LD-proxies of rSNPOverlapped rCNV
|
mRNA abundance
|
20 |
rs550157421 |
chr1:169539291-169539292 |
Active TSS Strong transcription Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer
|
n/a
|
n/a
|
Overlapped CNVs
|
n/a
|
21 |
rs190871988 |
chr1:169539331-169539332 |
Active TSS Strong transcription Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer
|
n/a
|
n/a
|
Overlapped CNVs
|
n/a
|
22 |
rs6663533 |
chr1:169539348-169539349 |
Active TSS Strong transcription Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer
|
n/a
|
n/a
|
LD-proxies of rSNPOverlapped rCNV
|
n/a
|
23 |
rs543059900 |
chr1:169539372-169539373 |
Active TSS Strong transcription Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer
|
n/a
|
n/a
|
Overlapped CNVs
|
n/a
|
24 |
rs554324322 |
chr1:169539527-169539528 |
Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Active TSS Bivalent Enhancer
|
n/a
|
n/a
|
Overlapped CNVs
|
n/a
|
25 |
rs572444262 |
chr1:169539546-169539547 |
Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Active TSS Bivalent Enhancer
|
n/a
|
n/a
|
Overlapped CNVs
|
n/a
|
26 |
rs536651547 |
chr1:169539608-169539609 |
Enhancers Active TSS Weak transcription Strong transcription Genic enhancers Flanking Active TSS
|
n/a
|
n/a
|
Overlapped CNVs
|
n/a
|
27 |
rs9332541 |
chr1:169539646-169539647 |
Enhancers Active TSS Weak transcription Strong transcription Genic enhancers Flanking Active TSS
|
n/a
|
n/a
|
LD-proxies of rSNPOverlapped rCNV
|
n/a
|
28 |
rs368822568 |
chr1:169539650-169539651 |
Enhancers Active TSS Weak transcription Strong transcription Genic enhancers Flanking Active TSS
|
n/a
|
n/a
|
Overlapped CNVs
|
n/a
|
29 |
rs9332540 |
chr1:169539657-169539658 |
Enhancers Active TSS Weak transcription Strong transcription Genic enhancers Flanking Active TSS
|
n/a
|
n/a
|
Overlapped CNVs
|
n/a
|
30 |
rs183859416 |
chr1:169539663-169539664 |
Enhancers Active TSS Weak transcription Strong transcription Genic enhancers Flanking Active TSS
|
n/a
|
n/a
|
Overlapped CNVs
|
n/a
|
31 |
rs9332539 |
chr1:169539711-169539712 |
Enhancers Active TSS Weak transcription Strong transcription Genic enhancers Flanking Active TSS
|
n/a
|
n/a
|
LD-proxies of rSNPOverlapped rCNV
|
n/a
|
32 |
rs542883070 |
chr1:169539752-169539753 |
Enhancers Active TSS Weak transcription Strong transcription Genic enhancers Flanking Active TSS
|
n/a
|
n/a
|
Overlapped CNVs
|
n/a
|
33 |
rs544673913 |
chr1:169539759-169539760 |
Enhancers Active TSS Weak transcription Strong transcription Genic enhancers Flanking Active TSS
|
n/a
|
n/a
|
Overlapped CNVs
|
n/a
|
34 |
rs188802820 |
chr1:169539771-169539772 |
Enhancers Active TSS Weak transcription Strong transcription Genic enhancers Flanking Active TSS
|
n/a
|
n/a
|
Overlapped CNVs
|
n/a
|
35 |
rs527250726 |
chr1:169539789-169539790 |
Enhancers Active TSS Weak transcription Strong transcription Genic enhancers Flanking Active TSS
|
n/a
|
n/a
|
Overlapped CNVs
|
n/a
|
36 |
rs542252741 |
chr1:169539790-169539791 |
Enhancers Active TSS Weak transcription Strong transcription Genic enhancers Flanking Active TSS
|
n/a
|
n/a
|
Overlapped CNVs
|
n/a
|
37 |
rs561625438 |
chr1:169539792-169539793 |
Enhancers Active TSS Weak transcription Strong transcription Genic enhancers Flanking Active TSS
|
n/a
|
n/a
|
Overlapped CNVs
|
n/a
|
38 |
rs111768355 |
chr1:169539807-169539808 |
Weak transcription Active TSS Strong transcription Genic enhancers Enhancers Flanking Active TSS
|
n/a
|
n/a
|
Overlapped CNVs
|
n/a
|
39 |
rs550335337 |
chr1:169539809-169539810 |
Weak transcription Active TSS Strong transcription Genic enhancers Enhancers Flanking Active TSS
|
n/a
|
n/a
|
Overlapped CNVs
|
n/a
|
40 |
rs571716415 |
chr1:169539810-169539811 |
Weak transcription Active TSS Strong transcription Genic enhancers Enhancers Flanking Active TSS
|
n/a
|
n/a
|
Overlapped CNVs
|
n/a
|
41 |
rs545231550 |
chr1:169539831-169539832 |
Weak transcription Active TSS Strong transcription Genic enhancers Enhancers Flanking Active TSS
|
n/a
|
n/a
|
Overlapped CNVs
|
n/a
|
42 |
rs532777080 |
chr1:169539900-169539901 |
Weak transcription Active TSS Strong transcription Genic enhancers Enhancers Flanking Active TSS
|
n/a
|
n/a
|
Overlapped CNVs
|
n/a
|
43 |
rs9332538 |
chr1:169539923-169539924 |
Weak transcription Active TSS Strong transcription Genic enhancers Enhancers Flanking Active TSS
|
n/a
|
n/a
|
LD-proxies of rSNPOverlapped rCNV
|
n/a
|
44 |
rs566187667 |
chr1:169539940-169539941 |
Weak transcription Active TSS Strong transcription Genic enhancers Enhancers Flanking Active TSS
|
n/a
|
n/a
|
Overlapped CNVs
|
n/a
|
45 |
rs138617034 |
chr1:169539948-169539949 |
Weak transcription Active TSS Strong transcription Genic enhancers Enhancers Flanking Active TSS
|
n/a
|
n/a
|
Overlapped CNVs
|
n/a
|
46 |
rs9332537 |
chr1:169539954-169539955 |
Weak transcription Active TSS Strong transcription Genic enhancers Enhancers Flanking Active TSS
|
n/a
|
n/a
|
Overlapped CNVs
|
n/a
|
47 |
rs544631479 |
chr1:169539973-169539974 |
Weak transcription Active TSS Strong transcription Genic enhancers Enhancers Flanking Active TSS
|
n/a
|
n/a
|
Overlapped CNVs
|
n/a
|
48 |
rs536639210 |
chr1:169539974-169539975 |
Weak transcription Active TSS Strong transcription Genic enhancers Enhancers Flanking Active TSS
|
n/a
|
n/a
|
Overlapped CNVs
|
n/a
|
49 |
rs554693958 |
chr1:169539985-169539986 |
Weak transcription Active TSS Strong transcription Genic enhancers Enhancers Flanking Active TSS
|
n/a
|
n/a
|
Overlapped CNVs
|
n/a
|
50 |
rs9332536 |
chr1:169540051-169540052 |
Weak transcription Flanking Active TSS Strong transcription Genic enhancers Enhancers
|
n/a
|
n/a
|
Overlapped CNVs
|
n/a
|