Variant report

Variant	nsv872542
Chromosome Location	chr1:169802760-169844093
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:276)
CpG islands
(count:61)
Chromatin interactive
region (count:63)
LncRNA
region (count:6)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:276 , 50 per page) page: 1 2 3 4 5 6

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr1:169829990-169830266	HepG2	liver:	n/a	n/a
2	CEBPB	chr1:169807899-169808110	HepG2	liver:	n/a	chr1:169808015-169808026
3	CEBPB	chr1:169807904-169808123	A549	lung:	n/a	chr1:169808015-169808026
4	CEBPB	chr1:169818520-169819056	MCF-7	breast:	n/a	n/a
5	CEBPB	chr1:169838111-169838439	MCF-7	breast:	n/a	n/a
6	CTCF	chr1:169802840-169802990	GM12874	blood:	n/a	n/a
7	CTCF	chr1:169823680-169823830	HPAF	blood vessel:	n/a	n/a
8	CTCF	chr1:169835540-169835690	GM12869	blood:	n/a	n/a
9	CTCF	chr1:169835500-169835650	GM12871	blood:	n/a	n/a
10	CTCF	chr1:169840600-169840750	GM06990	blood:	n/a	n/a
11	CTCF	chr1:169840480-169840630	HepG2	liver:	n/a	n/a
12	CTCF	chr1:169843854-169843908	GM10266	blood:	n/a	n/a
13	CUX1	chr1:169826861-169826866	K562	blood:	n/a	n/a
14	EBF1	chr1:169824555-169824664	GM12878	blood:	n/a	n/a
15	EP300	chr1:169824496-169824675	GM12878	blood:	n/a	n/a
16	EP300	chr1:169842523-169843844	SK-N-SH	brain:	n/a	chr1:169842979-169842989 chr1:169843207-169843221
17	EP300	chr1:169835754-169836026	SK-N-SH_RA	brain:	n/a	chr1:169835949-169835958 chr1:169835950-169835959
18	EP300	chr1:169818393-169819089	T-47D	breast:	n/a	chr1:169818603-169818617
19	EP300	chr1:169824475-169824693	GM12878	blood:	n/a	n/a
20	EP300	chr1:169842522-169843295	SK-N-SH	brain:	n/a	chr1:169842979-169842989 chr1:169843207-169843221
21	EP300	chr1:169842724-169843152	T-47D	breast:	n/a	chr1:169842979-169842989
22	EP300	chr1:169837959-169838633	T-47D	breast:	n/a	chr1:169838412-169838426
23	EP300	chr1:169829911-169830247	HepG2	liver:	n/a	n/a
24	EP300	chr1:169843429-169843742	SK-N-SH_RA	brain:	n/a	n/a
25	EP300	chr1:169818456-169818922	T-47D	breast:	n/a	chr1:169818603-169818617
26	EP300	chr1:169835693-169835984	SK-N-SH_RA	brain:	n/a	chr1:169835949-169835958 chr1:169835950-169835959
27	EP300	chr1:169835516-169836690	SK-N-SH	brain:	n/a	chr1:169835949-169835958 chr1:169835950-169835959
28	EP300	chr1:169843315-169843901	SK-N-SH	brain:	n/a	n/a
29	EP300	chr1:169827444-169828085	T-47D	breast:	n/a	n/a
30	EP300	chr1:169838051-169838509	T-47D	breast:	n/a	chr1:169838412-169838426
31	EP300	chr1:169842655-169843017	SK-N-SH_RA	brain:	n/a	chr1:169842979-169842989
32	FOS	chr1:169843420-169843711	MCF10A-Er-Src	breast:	n/a	chr1:169843550-169843560 chr1:169843550-169843560 chr1:169843645-169843654
33	FOS	chr1:169843427-169843703	MCF10A-Er-Src	breast:	n/a	chr1:169843550-169843560 chr1:169843550-169843560 chr1:169843645-169843654
34	FOS	chr1:169842826-169843026	MCF10A-Er-Src	breast:	n/a	chr1:169842914-169842923
35	FOS	chr1:169843391-169843709	MCF10A-Er-Src	breast:	n/a	chr1:169843550-169843560 chr1:169843550-169843560 chr1:169843645-169843654
36	FOS	chr1:169827649-169827863	MCF10A-Er-Src	breast:	n/a	n/a
37	FOS	chr1:169835972-169836040	MCF10A-Er-Src	breast:	n/a	n/a
38	FOSL1	chr1:169843345-169843784	HCT-116	colon:	n/a	chr1:169843550-169843560 chr1:169843550-169843560 chr1:169843645-169843654
39	FOSL2	chr1:169842657-169843108	MCF-7	breast:	n/a	chr1:169842914-169842923
40	FOSL2	chr1:169842597-169843955	SK-N-SH	brain:	n/a	chr1:169843550-169843560 chr1:169842914-169842923 chr1:169843176-169843185 chr1:169843550-169843560 chr1:169843645-169843654
41	FOSL2	chr1:169835573-169836192	SK-N-SH	brain:	n/a	chr1:169835950-169835957 chr1:169835950-169835959 chr1:169835949-169835958 chr1:169835950-169835958
42	FOSL2	chr1:169836209-169836657	SK-N-SH	brain:	n/a	n/a
43	FOSL2	chr1:169843372-169843796	SK-N-SH	brain:	n/a	chr1:169843550-169843560 chr1:169843550-169843560 chr1:169843645-169843654
44	FOSL2	chr1:169842778-169843175	MCF-7	breast:	n/a	chr1:169842914-169842923
45	FOXA1	chr1:169838086-169838501	T-47D	breast:	n/a	chr1:169838281-169838293
46	FOXA1	chr1:169818662-169819128	HepG2	liver:	n/a	n/a
47	FOXA1	chr1:169818525-169819176	T-47D	breast:	n/a	n/a
48	FOXA1	chr1:169827659-169828007	T-47D	breast:	n/a	n/a
49	FOXA1	chr1:169818795-169819058	HepG2	liver:	n/a	n/a
50	FOXA1	chr1:169842706-169843152	T-47D	breast:	n/a	n/a

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr1:169822076-169822126	Jurkat	blood:	n/a
2	chr1:169822076-169822126	HRE	kidney:	n/a
3	chr1:169822076-169822126	GM12891	blood:	n/a
4	chr1:169822076-169822126	HCF	heart:	n/a
5	chr1:169822076-169822126	SK-N-MC	brain:	n/a
6	chr1:169822076-169822126	HRCEpiC	kidney:	n/a
7	chr1:169822076-169822126	HCT-116	colon:	n/a
8	chr1:169822076-169822126	HEEpiC	esophagus:	n/a
9	chr1:169822076-169822126	AoSMC	blood vessel:	n/a
10	chr1:169822076-169822126	IMR90	lung:	fetal
11	chr1:169822076-169822126	BE2_C	brain:	n/a
12	chr1:169822076-169822126	NT2-D1	testis:	n/a
13	chr1:169822076-169822126	H1-hESC	embryonic stem cell:	embryo
14	chr1:169822076-169822126	HUVEC	blood vessel:	n/a
15	chr1:169822076-169822126	CMK	blood:	n/a
16	chr1:169822076-169822126	U87	brain:	n/a
17	chr1:169822076-169822126	GM19239	blood:	n/a
18	chr1:169822076-169822126	NB4	blood:	n/a
19	chr1:169822076-169822126	PrEC	prostate:	n/a
20	chr1:169822076-169822126	GM12892	blood:	n/a
21	chr1:169822076-169822126	HCM	heart:	n/a
22	chr1:169822076-169822126	NH-A	brain:	n/a
23	chr1:169822076-169822126	Hela-S3	cervix:	n/a
24	chr1:169822076-169822126	AG10803	skin:	n/a
25	chr1:169822076-169822126	MCF-7	breast:	n/a
26	chr1:169822076-169822126	Caco-2	colon:	n/a
27	chr1:169822076-169822126	RPTEC	kidney:	n/a
28	chr1:169822076-169822126	MCF10A-Er-Src	breast:	n/a
29	chr1:169822076-169822126	HRPEpiC	eye:	n/a
30	chr1:169822076-169822126	ovcar-3	ovarian:	n/a
31	chr1:169822076-169822126	GM12878	blood:	n/a
32	chr1:169822076-169822126	PFSK-1	brain:	n/a
33	chr1:169822076-169822126	PANC-1	pancreas:	n/a
34	chr1:169822076-169822126	T-47D	breast:	n/a
35	chr1:169822076-169822126	SK-N-SH	brain:	n/a
36	chr1:169822076-169822126	AG04449	skin:	fetal
37	chr1:169822076-169822126	HMEC	breast:	n/a
38	chr1:169822076-169822126	ECC-1	luminal epithelium:	n/a
39	chr1:169822076-169822126	HNPCEpiC	eye:	n/a
40	chr1:169822076-169822126	AG09309	skin:	n/a
41	chr1:169822076-169822126	K562	blood:	n/a
42	chr1:169822076-169822126	HAEpiC	amniotic membrane:	n/a
43	chr1:169822076-169822126	NHBE	bronchial:	n/a
44	chr1:169822076-169822126	HIPEpiC	eye:	n/a
45	chr1:169822076-169822126	NHDF-neo	bronchial:	n/a
46	chr1:169822076-169822126	HCPEpiC	choroid plexus:	n/a
47	chr1:169822076-169822126	HL-60	blood:	n/a
48	chr1:169822076-169822126	Hepatocyte	liver:	n/a
49	chr1:169822076-169822126	SK-N-SH_RA	brain:	n/a
50	chr1:169822076-169822126	ProgFib	skin:	n/a

(count:63 , 50 per page) page: 1 2

No.	Distal block	Cell Line	Cell type
1	chr1:169816355..169818244-chr1:169822302..169824736,2	K562	blood:
2	chr1:169810204..169812691-chr1:169819466..169821386,2	MCF-7	breast:
3	chr1:169819066..169821077-chr1:169823011..169825222,2	K562	blood:
4	chr1:169832885..169835732-chr1:169836345..169840592,4	K562	blood:
5	chr1:169762571..169765359-chr1:169821274..169823423,2	K562	blood:
6	chr1:169837435..169839435-chr1:169862331..169864097,2	MCF-7	breast:
7	chr1:169826425..169828479-chr1:169831022..169833757,2	K562	blood:
8	chr1:169806621..169807436-chr17:35409246..35410122,2	NB4	blood:
9	chr1:169832885..169834948-chr1:169838301..169840592,2	K562	blood:
10	chr1:169812131..169813776-chr1:169822514..169824878,2	K562	blood:
11	chr1:169821793..169826224-chr1:169827537..169831257,5	K562	blood:
12	chr1:169819577..169821810-chr1:169823722..169826124,2	K562	blood:
13	chr1:169841646..169845084-chr1:169857694..169862794,6	MCF-7	breast:
14	chr1:169832885..169835732-chr1:169836345..169840592,4	K562	blood:
15	chr1:169815997..169818292-chr1:169837214..169839882,2	K562	blood:
16	chr1:169837054..169838824-chr1:169842629..169844274,2	K562	blood:
17	chr1:169837277..169839555-chr1:169841347..169844227,3	MCF-7	breast:
18	chr1:169819515..169822344-chr1:169896401..169898488,2	MCF-7	breast:
19	chr1:169837277..169839555-chr1:169841347..169844227,3	MCF-7	breast:
20	chr1:169811782..169814669-chr1:169816752..169818969,2	K562	blood:
21	chr1:169811782..169814022-chr1:169814299..169816027,2	MCF-7	breast:
22	chr1:169812533..169814235-chr1:169854142..169856140,2	MCF-7	breast:
23	chr1:169790924..169793172-chr1:169810739..169813413,2	K562	blood:
24	chr1:169821063..169825136-chr1:169860928..169863692,3	K562	blood:
25	chr1:169841592..169844397-chr1:169861385..169863350,2	K562	blood:
26	chr1:169763242..169766140-chr1:169817412..169820013,2	K562	blood:
27	chr1:169825649..169828863-chr1:169858551..169863079,4	K562	blood:
28	chr1:169826041..169827646-chr1:169861241..169863079,2	K562	blood:
29	chr1:169811782..169814669-chr1:169816752..169818969,2	K562	blood:
30	chr1:169832885..169834948-chr1:169838301..169840592,2	K562	blood:
31	chr1:169810189..169813776-chr1:169821630..169824014,3	K562	blood:
32	chr1:169823925..169827148-chr1:169828128..169831257,4	K562	blood:
33	chr1:169818623..169820125-chr1:169861453..169863170,2	MCF-7	breast:
34	chr1:169810189..169813776-chr1:169821630..169824014,3	K562	blood:
35	chr1:169836590..169839885-chr1:169857998..169860650,3	MCF-7	breast:
36	chr1:169816798..169818330-chr1:169841352..169844284,2	MCF-7	breast:
37	chr1:169764137..169766860-chr1:169812488..169814041,2	K562	blood:
38	chr1:169811782..169814022-chr1:169814299..169816027,2	MCF-7	breast:
39	chr1:169826425..169828479-chr1:169831022..169833757,2	K562	blood:
40	chr1:169555910..169558714-chr1:169805893..169807663,2	K562	blood:
41	chr1:169815223..169817412-chr1:169826417..169828144,2	K562	blood:
42	chr1:169818930..169821400-chr1:169825229..169828152,2	K562	blood:
43	chr1:169815223..169817412-chr1:169826417..169828144,2	K562	blood:
44	chr1:169815997..169818292-chr1:169837214..169839882,2	K562	blood:
45	chr1:169829331..169831761-chr1:169833787..169835986,2	K562	blood:
46	chr1:169816746..169819328-chr1:169826032..169828001,2	K562	blood:
47	chr1:169818930..169821400-chr1:169825229..169828152,2	K562	blood:
48	chr1:169828508..169830396-chr1:169831117..169833390,3	K562	blood:
49	chr1:169810204..169812691-chr1:169819466..169821386,2	MCF-7	breast:
50	chr1:169837054..169838824-chr1:169842629..169844274,2	K562	blood:

(count:6 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-C1orf112-3	chr1:169831703-169831902	NONHSAT007480
2	lnc-C1orf112-3	chr1:169840540-169842473	NONHSAT007480
3	lnc-C1orf112-2	chr1:169828897-169829193	NONHSAT007481
4	lnc-C1orf112-3	chr1:169831686-169831902	NONHSAT007482
5	lnc-C1orf112-3	chr1:169840540-169842471	NONHSAT007482
6	lnc-C1orf112-3	chr1:169824995-169825104	NONHSAT007480

No data

Variant related genes	Relation type
RN7SL333P	TF binding region
RN7SL333P	CpG island
ENSG00000266895	chromatin interactions
ENSG00000171806	chromatin interactions
ENSG00000000460	chromatin interactions
ENSG00000239494	chromatin interactions
ENSG00000000457	chromatin interactions

Extended variants
information (count: 1631 )
Associated
traits (count: 93 )

Variant overlapped rSNPs/rCNVs (count:1631 , 50 per page) page: 1 2 3 4 5 6 7 ... 33

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs7521700	chr1:169802760-169802761	Weak transcription Strong transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
2	rs111886299	chr1:169802848-169802849	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs570115701	chr1:169802857-169802858	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs528047972	chr1:169802866-169802867	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs4615900	chr1:169802878-169802879	Weak transcription Strong transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
6	rs145615685	chr1:169802901-169802902	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs114457459	chr1:169802914-169802915	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs200260622	chr1:169802923-169802924	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs184185658	chr1:169802938-169802939	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs77525605	chr1:169802948-169802949	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs10919252	chr1:169802956-169802957	Weak transcription Strong transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
12	rs67414921	chr1:169803012-169803013	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs558239877	chr1:169803016-169803017	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs112742011	chr1:169803022-169803023	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs577749294	chr1:169803049-169803050	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs59576846	chr1:169803067-169803068	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs113784190	chr1:169803109-169803110	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs34032540	chr1:169803119-169803120	Weak transcription Strong transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
19	rs540233032	chr1:169803132-169803133	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs555708574	chr1:169803217-169803218	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs574687684	chr1:169803223-169803224	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs58569433	chr1:169803234-169803235	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs148905582	chr1:169803311-169803312	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs188838719	chr1:169803404-169803405	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs181206311	chr1:169803407-169803408	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs545514766	chr1:169803435-169803436	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs563803098	chr1:169803521-169803522	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs528159624	chr1:169803553-169803554	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs80067086	chr1:169803584-169803585	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs11430767	chr1:169803614-169803615	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs398049708	chr1:169803622-169803623	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs568045683	chr1:169803635-169803636	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs17529791	chr1:169803690-169803691	Weak transcription Strong transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
34	rs3766143	chr1:169803717-169803718	Weak transcription Strong transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
35	rs569478388	chr1:169803765-169803766	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs540013914	chr1:169803775-169803776	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs558301274	chr1:169803781-169803782	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs566997216	chr1:169803794-169803795	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs73022290	chr1:169803884-169803885	Weak transcription Strong transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
40	rs555517183	chr1:169803938-169803939	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs145402986	chr1:169803990-169803991	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs186208102	chr1:169804030-169804031	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs556808832	chr1:169804061-169804062	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs575112959	chr1:169804070-169804071	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs527799558	chr1:169804080-169804081	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs550274020	chr1:169804103-169804104	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs138051937	chr1:169804176-169804177	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs376404205	chr1:169804180-169804181	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs561447104	chr1:169804201-169804202	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs563918086	chr1:169804237-169804238	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:93)

Disease	PMID	Source
Breast cancer	17603634	CNVD
Esophageal squamous carcinoma	21637470	CNVD
HIV/AIDS	22032296	CNVD
Schizophrenia	19415332	CNVD
Autism	22495311	CNVD
Hepatocellular carcinoma	16750200	CNVD
Liposarcoma	21253554	CNVD
Burkitt''s lymphoma	18698080	CNVD
Melanoma	18172304	CNVD
Glioblastoma multiforme	21080181	CNVD
Cancer	21183584	CNVD
Multiple myeloma	16461302	CNVD
Rett syndrome	21593744	CNVD
Intellectual disability	22102821	CNVD
Cancer	20164919	CNVD
Medulloblastoma	21979893	CNVD
Acute lymphoblastic leukemia	17443227	CNVD
Wilms tumour	21544195	CNVD
Breast cancer	17133270	CNVD
Non-small cell lung cancer	21829676	CNVD
Carcinoma ex pleomorphic adenoma	18828159	CNVD
Non-small cell lung cancer	21044232	CNVD
Cervical cancer	21063398	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	20632083	CNVD
Endometrial cancer	22040021	CNVD
Ewing''s sarcoma	21437220	CNVD
Gastrointestinal stromal cancer	20470368	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Medulloblastoma	21292688	CNVD
Phyllodes tumor	17334353	CNVD
Breast cancer	21264507	CNVD
Multiple myeloma	21628407	CNVD
Cancer	16751803	CNVD
Prostate cancer	16705090	CNVD
Neuroblastoma	19435921	CNVD
Breast cancer	17850661	CNVD
Breast cancer	16461572	CNVD
Intracranial tumor	16823260	CNVD
Medulloblastoma	18056178	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Primary mediastinal b-cell lymphoma	17728785	CNVD
Colorectal cancer	16272173	CNVD
Acute lymphoblastic leukemia	21098271	CNVD
Neuroblastoma	21899760	CNVD
Bladder cancer	19088036	CNVD
Ovarian neoplasms	16753589	CNVD
Glioblastoma multiforme	17002787	CNVD
Breast cancer	21858162	CNVD
Retinoblastoma	19183342	CNVD
Non-small cell lung cancer	21385341	CNVD
Acute lymphoblastic leukemia	21980252	CNVD
Breast cancer	16608533	CNVD
Ewing''s sarcoma	22429812	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Chordoma	18071362	CNVD
Hepatocellular carcinoma	18803288	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Breast cancer	17001317	CNVD
Urothelial carcinoma	21177765	CNVD
Burkitt''s lymphoma	19759907	CNVD
Acute myeloid leukemia	21251322	CNVD
Multiple myeloma	17550852	CNVD
Prostate cancer	18632612	CNVD
Breast cancer	21509527	CNVD
Acute myeloid leukemia	20729466	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Testicular germ cell tumor	18059402	CNVD
Trisomy 5 syndrome	21098271	CNVD
Ependymoma	18628472	CNVD
Leukemia	18628472	CNVD
Breast cancer	21611746	CNVD
Neuroblastoma	18923191	CNVD
Soft tissue tumor	16732325	CNVD
Cancer	17060936	CNVD
Lung cancer	16740712	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Ewing''s sarcoma	17952124	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
Acute lymphoblastic leukemia	19100363	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Williams-beuren syndrome	16971481	CNVD
Developmental delay	21147756	CNVD
Burkitt''s lymphoma	20823134	CNVD
small cell lung cancer	20016488	CNVD
Myelofibrosis	22110671	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Lung cancer	18438408	CNVD
Cancer	20164920	CNVD
Breast cancer	22522925	CNVD

Chromatin state (count:1291 , 50 per page) page: 1 2 3 4 5 6 7 ... 26

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:169764800-169818200	Weak transcription	Esophagus	oesophagus
2	chr1:169764800-169818200	Weak transcription	Lung	lung
3	chr1:169764800-169823600	Weak transcription	Gastric	stomach
4	chr1:169765000-169808000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr1:169765000-169821800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr1:169765200-169807800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr1:169765200-169808000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr1:169765200-169809000	Weak transcription	Primary T helper cells fromperipheralblood	blood
9	chr1:169765200-169814800	Weak transcription	Brain Anterior Caudate	brain
10	chr1:169765200-169815200	Weak transcription	Rectal Smooth Muscle	rectum
11	chr1:169765200-169818800	Weak transcription	Brain Angular Gyrus	brain
12	chr1:169765200-169820600	Weak transcription	Psoas Muscle	Psoas
13	chr1:169765200-169823400	Weak transcription	Right Ventricle	heart
14	chr1:169765400-169808000	Weak transcription	Fetal Heart	heart
15	chr1:169765400-169822600	Weak transcription	Colonic Mucosa	Colon
16	chr1:169765600-169808000	Weak transcription	Small Intestine	intestine
17	chr1:169765600-169818200	Weak transcription	NHLF	lung
18	chr1:169765800-169808000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr1:169765800-169815200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
20	chr1:169765800-169818400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
21	chr1:169773400-169808000	Weak transcription	Primary T helper cells PMA-I stimulated	--
22	chr1:169776400-169808000	Weak transcription	Primary T cells fromperipheralblood	blood
23	chr1:169777400-169815400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
24	chr1:169784000-169814000	Weak transcription	Brain Inferior Temporal Lobe	brain
25	chr1:169784000-169814800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
26	chr1:169786200-169862400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
27	chr1:169786600-169841400	Strong transcription	Dnd41	blood
28	chr1:169788600-169823600	Weak transcription	Pancreas	Pancrea
29	chr1:169789200-169818600	Weak transcription	Brain Cingulate Gyrus	brain
30	chr1:169790400-169808000	Strong transcription	HUES64 Cell Line	embryonic stem cell
31	chr1:169790800-169803200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
32	chr1:169790800-169804600	Strong transcription	Monocytes-CD14+_RO01746	blood
33	chr1:169790800-169808000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
34	chr1:169790800-169808800	Strong transcription	HUES48 Cell Line	embryonic stem cell
35	chr1:169791000-169804600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
36	chr1:169791200-169802800	Strong transcription	H1 Cell Line	embryonic stem cell
37	chr1:169791200-169803000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
38	chr1:169791200-169804200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
39	chr1:169791200-169808800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
40	chr1:169791200-169810800	Strong transcription	HUES6 Cell Line	embryonic stem cell
41	chr1:169791200-169841200	Strong transcription	Fetal Thymus	thymus
42	chr1:169793800-169808000	Weak transcription	Brain Hippocampus Middle	brain
43	chr1:169793800-169808000	Weak transcription	Fetal Brain Male	brain
44	chr1:169793800-169814400	Weak transcription	Brain Substantia Nigra	brain
45	chr1:169793800-169822600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
46	chr1:169794000-169814800	Weak transcription	Aorta	Aorta
47	chr1:169794200-169808000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
48	chr1:169794200-169818400	Weak transcription	NHEK	skin
49	chr1:169794800-169822000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
50	chr1:169795800-169802800	Strong transcription	Placenta	Placenta

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links