Variant report

Variant	nsv872589
Chromosome Location	chr1:186354146-186390303
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:312)
CpG islands
(count:183)
Chromatin interactive
region (count:44)
LncRNA
region (count:2)
Mature miRNA
region (count: 0)
miRNA target
sites (count:1)

(count:312 , 50 per page) page: 1 2 3 4 5 6 7

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ATF1	chr1:186354459-186354509	K562	blood:	n/a	n/a
2	ATF1	chr1:186373705-186373946	K562	blood:	n/a	n/a
3	CEBPB	chr1:186356364-186356657	K562	blood:	n/a	chr1:186356514-186356523
4	CEBPB	chr1:186366894-186367220	IMR90	lung:	n/a	chr1:186367067-186367076 chr1:186367067-186367078 chr1:186367065-186367078
5	CEBPB	chr1:186362272-186362564	Hela-S3	cervix:	n/a	n/a
6	CREB1	chr1:186373552-186374117	K562	blood:	n/a	n/a
7	CTCF	chr1:186373680-186373830	A549	lung:	n/a	n/a
8	CTCF	chr1:186373625-186373882	Kidney_OC	kidney:	n/a	n/a
9	CTCF	chr1:186373220-186373370	BJ	skin:	n/a	n/a
10	CTCF	chr1:186373680-186373830	HMEC	breast:	n/a	n/a
11	CTCF	chr1:186373533-186373993	A549	lung:	n/a	n/a
12	CTCF	chr1:186373680-186373830	HCFaa	heart:	n/a	n/a
13	CTCF	chr1:186373660-186373810	HAc	cerebellar:	n/a	n/a
14	CTCF	chr1:186373700-186373850	HA-sp	spinal cord:	n/a	n/a
15	CTCF	chr1:186373680-186373830	AG09309	skin:	n/a	n/a
16	CTCF	chr1:186373425-186374028	K562	blood:	n/a	n/a
17	CTCF	chr1:186373650-186373849	SK-N-SH_RA	brain:	n/a	n/a
18	CTCF	chr1:186373660-186373810	HBMEC	blood vessel:	n/a	n/a
19	CTCF	chr1:186373680-186373830	HepG2	liver:	n/a	n/a
20	CTCF	chr1:186373720-186373870	GM12865	blood:	n/a	n/a
21	CTCF	chr1:186373571-186373888	A549	lung:	n/a	n/a
22	CTCF	chr1:186367360-186367510	Caco-2	colon:	n/a	n/a
23	CTCF	chr1:186373680-186373830	AoAF	blood vessel:	n/a	n/a
24	CTCF	chr1:186373680-186373830	Hela-S3	cervix:	n/a	n/a
25	CTCF	chr1:186373700-186373850	GM12870	blood:	n/a	n/a
26	CTCF	chr1:186373680-186373830	GM12866	blood:	n/a	n/a
27	CTCF	chr1:186371790-186371861	H1-hESC	embryonic stem cell:	n/a	n/a
28	CTCF	chr1:186373680-186373830	GM12871	blood:	n/a	n/a
29	CTCF	chr1:186373639-186373922	K562	blood:	n/a	n/a
30	CTCF	chr1:186373700-186373850	HVMF	connective:	n/a	n/a
31	CTCF	chr1:186373600-186373750	HCPEpiC	choroid plexus:	n/a	n/a
32	CTCF	chr1:186373571-186373854	H1-hESC	embryonic stem cell:	n/a	n/a
33	CTCF	chr1:186373606-186373910	Medullo	brain:	n/a	n/a
34	CTCF	chr1:186373720-186373870	HepG2	liver:	n/a	n/a
35	CTCF	chr1:186373700-186373850	GM12878	blood:	n/a	n/a
36	CTCF	chr1:186373740-186373890	RPTEC	kidney:	n/a	n/a
37	CTCF	chr1:186373580-186373730	HFF	foreskin:	n/a	n/a
38	CTCF	chr1:186373680-186373830	AG09319	gingival:	n/a	n/a
39	CTCF	chr1:186373700-186373850	HPF	lung:	n/a	n/a
40	CTCF	chr1:186373559-186374017	MCF-7	breast:	n/a	n/a
41	CTCF	chr1:186373680-186373830	AG04450	lung:	n/a	n/a
42	CTCF	chr1:186373720-186373870	BJ	skin:	n/a	n/a
43	CTCF	chr1:186373680-186373830	GM12874	blood:	n/a	n/a
44	CTCF	chr1:186373660-186373810	Caco-2	colon:	n/a	n/a
45	CTCF	chr1:186373800-186373950	HAc	cerebellar:	n/a	n/a
46	CTCF	chr1:186371757-186371861	ProgFib	skin:	n/a	n/a
47	CTCF	chr1:186373700-186373850	AG10803	skin:	n/a	n/a
48	CTCF	chr1:186373820-186373970	NHLF	lung:	n/a	n/a
49	CTCF	chr1:186373700-186373850	HRE	kidney:	n/a	n/a
50	CTCF	chr1:186373660-186373810	WERI-Rb-1	eye:	n/a	n/a

(count:183 , 50 per page) page: 1 2 3 4

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr1:186370528-186370578	U87	brain:	n/a
2	chr1:186369020-186369070	HNPCEpiC	eye:	n/a
3	chr1:186389413-186389463	HCT-116	colon:	n/a
4	chr1:186370528-186370578	HMEC	breast:	n/a
5	chr1:186370528-186370578	GM06990	blood:	n/a
6	chr1:186389413-186389463	PANC-1	pancreas:	n/a
7	chr1:186370528-186370578	SAEC	small airway:	n/a
8	chr1:186389413-186389463	CMK	blood:	n/a
9	chr1:186370528-186370578	AG04450	lung:	fetal
10	chr1:186389413-186389463	U87	brain:	n/a
11	chr1:186370528-186370578	AG04449	skin:	fetal
12	chr1:186389413-186389463	K562	blood:	n/a
13	chr1:186389413-186389463	GM12892	blood:	n/a
14	chr1:186370528-186370578	HL-60	blood:	n/a
15	chr1:186370528-186370578	HCT-116	colon:	n/a
16	chr1:186369020-186369070	SK-N-MC	brain:	n/a
17	chr1:186369020-186369070	HCPEpiC	choroid plexus:	n/a
18	chr1:186389413-186389463	NT2-D1	testis:	n/a
19	chr1:186370528-186370578	ECC-1	luminal epithelium:	n/a
20	chr1:186389413-186389463	HRCEpiC	kidney:	n/a
21	chr1:186370528-186370578	PFSK-1	brain:	n/a
22	chr1:186389413-186389463	AG09319	gingival:	n/a
23	chr1:186370528-186370578	NH-A	brain:	n/a
24	chr1:186369020-186369070	AG10803	skin:	n/a
25	chr1:186389413-186389463	HCM	heart:	n/a
26	chr1:186389413-186389463	MCF10A-Er-Src	breast:	n/a
27	chr1:186370528-186370578	Hela-S3	cervix:	n/a
28	chr1:186370528-186370578	HEEpiC	esophagus:	n/a
29	chr1:186369020-186369070	NH-A	brain:	n/a
30	chr1:186389413-186389463	HPAEpiC	pulmonary alveolar:	n/a
31	chr1:186389413-186389463	A549	lung:	n/a
32	chr1:186369020-186369070	AG04449	skin:	fetal
33	chr1:186389413-186389463	HCF	heart:	n/a
34	chr1:186369020-186369070	AG04450	lung:	fetal
35	chr1:186370528-186370578	HRE	kidney:	n/a
36	chr1:186389413-186389463	MCF-7	breast:	n/a
37	chr1:186370528-186370578	HEK293	kidney:	embryo
38	chr1:186389413-186389463	Caco-2	colon:	n/a
39	chr1:186389413-186389463	ECC-1	luminal epithelium:	n/a
40	chr1:186389413-186389463	NHDF-neo	bronchial:	n/a
41	chr1:186369020-186369070	NHBE	bronchial:	n/a
42	chr1:186389413-186389463	PrEC	prostate:	n/a
43	chr1:186369020-186369070	U87	brain:	n/a
44	chr1:186370528-186370578	IMR90	lung:	fetal
45	chr1:186389413-186389463	NHBE	bronchial:	n/a
46	chr1:186389413-186389463	HUVEC	blood vessel:	n/a
47	chr1:186370528-186370578	H1-hESC	embryonic stem cell:	embryo
48	chr1:186370528-186370578	HIPEpiC	eye:	n/a
49	chr1:186369020-186369070	HIPEpiC	eye:	n/a
50	chr1:186389413-186389463	NB4	blood:	n/a

(count:44 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr1:186375983..186377916-chr1:186380424..186382428,2	K562	blood:
2	chr1:186386796..186388944-chr1:186399604..186401949,3	MCF-7	breast:
3	chr1:186351786..186353546-chr1:186357204..186358890,2	K562	blood:
4	chr1:186372550..186374489-chr1:186441138..186443259,2	MCF-7	breast:
5	chr1:186343275..186345831-chr1:186370094..186372459,2	K562	blood:
6	chr1:186376260..186377916-chr1:186380372..186382428,2	K562	blood:
7	chr1:186359040..186360832-chr1:186378064..186380778,2	K562	blood:
8	chr1:186343109..186345591-chr1:186373069..186376266,4	K562	blood:
9	chr1:186354829..186357430-chr1:186358384..186361058,3	K562	blood:
10	chr1:186352524..186355241-chr1:186393663..186395812,2	K562	blood:
11	chr1:186373972..186376157-chr1:186379499..186382713,3	MCF-7	breast:
12	chr1:186357371..186360885-chr1:186362480..186365023,4	K562	blood:
13	chr1:186378179..186381084-chr1:186382062..186384973,3	K562	blood:
14	chr1:186381482..186384419-chr1:186389970..186392449,3	K562	blood:
15	chr1:186303450..186305307-chr1:186372043..186373859,2	K562	blood:
16	chr1:186381482..186384419-chr1:186389970..186392449,3	K562	blood:
17	chr1:186373573..186374238-chr1:186954748..186955705,3	K562	blood:
18	chr1:186375983..186377916-chr1:186380424..186382428,2	K562	blood:
19	chr1:186344293..186346890-chr1:186353501..186357740,6	MCF-7	breast:
20	chr1:186361659..186366010-chr1:186371455..186375319,4	K562	blood:
21	chr1:186373972..186376157-chr1:186379499..186382713,3	MCF-7	breast:
22	chr1:186351329..186353389-chr1:186372131..186374033,2	K562	blood:
23	chr1:186378179..186381084-chr1:186382062..186384973,3	K562	blood:
24	chr1:186373326..186373968-chr1:186954948..186955674,2	MCF-7	breast:
25	chr1:186357371..186360885-chr1:186362480..186365023,4	K562	blood:
26	chr1:186376260..186377916-chr1:186380372..186382428,2	K562	blood:
27	chr1:186362143..186364108-chr1:186368124..186371835,3	K562	blood:
28	chr1:186358800..186360589-chr1:186369488..186372003,2	MCF-7	breast:
29	chr1:186374114..186376141-chr1:186408577..186410656,2	MCF-7	breast:
30	chr1:186373386..186374034-chr1:186451869..186452455,2	MCF-7	breast:
31	chr1:186359040..186360832-chr1:186378064..186380778,2	K562	blood:
32	chr1:186343907..186345654-chr1:186382510..186384256,2	MCF-7	breast:
33	chr1:186369970..186371779-chr1:186378105..186380779,2	K562	blood:
34	chr1:186369970..186371779-chr1:186378105..186380779,2	K562	blood:
35	chr1:186373731..186374559-chr1:186954735..186955602,2	MCF-7	breast:
36	chr1:186348112..186349621-chr1:186383105..186385568,2	K562	blood:
37	chr1:186370487..186373941-chr1:186374883..186377860,4	K562	blood:
38	chr1:186370487..186373941-chr1:186374883..186377860,4	K562	blood:
39	chr1:186354829..186357430-chr1:186358384..186361058,3	K562	blood:
40	chr1:186380559..186382125-chr1:186386387..186388417,2	K562	blood:
41	chr1:186378179..186381084-chr1:186382062..186384910,2	K562	blood:
42	chr1:186384905..186386985-chr1:186417327..186419013,2	K562	blood:
43	chr1:186344089..186347008-chr1:186357824..186359860,2	K562	blood:
44	chr1:186378179..186381084-chr1:186382062..186384910,2	K562	blood:

(count:2 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-PRG4-2	chr1:186388141-186388365	NONHSAT008448
2	lnc-PRG4-2	chr1:186386509-186386786	NONHSAT008448

No data

(count:1 , 50 per page) page: 1

No.	miRNA target gene	miRNA name	Chromosome Location	mirBase accession
1	C1orf27	hsa-miR-1	chr1:186389494-186389515

Variant related genes	Relation type
C1orf27	TF binding region
ENSG00000268662	TF binding region
OCLM	TF binding region
C1orf27	CpG island
ENSG00000268662	CpG island
OCLM	CpG island
ENSG00000157181	chromatin interactions
ENSG00000047410	chromatin interactions
ENSG00000262180	chromatin interactions
ENSG00000116703	chromatin interactions
ENSG00000268662	chromatin interactions

Extended variants
information (count: 1373 )
Associated
traits (count: 87 )

Variant overlapped rSNPs/rCNVs (count:1373 , 50 per page) page: 1 2 3 4 5 6 7 ... 28

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs16825277	chr1:186354146-186354147	Weak transcription Strong transcription Enhancers	Chromatin interactive region	2 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
2	rs550591849	chr1:186354149-186354150	Weak transcription Strong transcription Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
3	rs544213138	chr1:186354156-186354157	Weak transcription Strong transcription Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
4	rs200289970	chr1:186354158-186354159	Weak transcription Strong transcription Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
5	rs562513984	chr1:186354202-186354203	Weak transcription Strong transcription Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
6	rs557728369	chr1:186354207-186354208	Weak transcription Strong transcription Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
7	rs149693944	chr1:186354357-186354358	Weak transcription Strong transcription Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
8	rs36064294	chr1:186354360-186354361	Weak transcription Strong transcription Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
9	rs542351366	chr1:186354379-186354380	Weak transcription Strong transcription Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
10	rs375028641	chr1:186354432-186354433	Weak transcription Strong transcription Genic enhancers Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
11	rs12726960	chr1:186354440-186354441	Weak transcription Strong transcription Genic enhancers Enhancers	Chromatin interactive region	2 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
12	rs552048507	chr1:186354483-186354484	Weak transcription Strong transcription Genic enhancers Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
13	rs3119332	chr1:186354500-186354501	Weak transcription Strong transcription Genic enhancers Enhancers	Chromatin interactive region	2 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
14	rs531609709	chr1:186354515-186354516	Weak transcription Strong transcription Genic enhancers Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
15	rs550079815	chr1:186354520-186354521	Weak transcription Strong transcription Genic enhancers Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
16	rs116485698	chr1:186354593-186354594	Weak transcription Strong transcription Genic enhancers Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
17	rs535431483	chr1:186354632-186354633	Weak transcription Strong transcription Genic enhancers Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
18	rs3119333	chr1:186354635-186354636	Weak transcription Strong transcription Genic enhancers Enhancers	Chromatin interactive region	2 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
19	rs190078184	chr1:186354650-186354651	Weak transcription Strong transcription Genic enhancers Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
20	rs16825279	chr1:186354655-186354656	Weak transcription Strong transcription Genic enhancers Enhancers	Chromatin interactive region	2 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
21	rs562167881	chr1:186354665-186354666	Weak transcription Strong transcription Genic enhancers Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
22	rs534413501	chr1:186354677-186354678	Weak transcription Strong transcription Genic enhancers Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
23	rs113144210	chr1:186354730-186354731	Weak transcription Strong transcription Genic enhancers Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
24	rs371349657	chr1:186354735-186354736	Weak transcription Strong transcription Genic enhancers Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
25	rs144771240	chr1:186354755-186354756	Weak transcription Strong transcription Genic enhancers Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
26	rs538175207	chr1:186354808-186354809	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
27	rs556430625	chr1:186354821-186354822	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
28	rs533254138	chr1:186354842-186354843	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
29	rs574541544	chr1:186354864-186354865	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
30	rs534887211	chr1:186354913-186354914	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
31	rs116272106	chr1:186354916-186354917	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
32	rs560645266	chr1:186354921-186354922	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
33	rs572417590	chr1:186354933-186354934	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
34	rs538375639	chr1:186354957-186354958	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
35	rs372437615	chr1:186355087-186355088	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
36	rs376926467	chr1:186355104-186355105	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
37	rs564303012	chr1:186355105-186355106	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
38	rs531521128	chr1:186355111-186355112	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
39	rs550138325	chr1:186355124-186355125	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
40	rs115570554	chr1:186355168-186355169	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
41	rs528881905	chr1:186355179-186355180	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
42	rs139713643	chr1:186355211-186355212	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
43	rs373325018	chr1:186355251-186355252	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
44	rs565782442	chr1:186355255-186355256	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
45	rs539132507	chr1:186355261-186355262	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
46	rs551433981	chr1:186355316-186355317	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
47	rs553005194	chr1:186355350-186355351	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
48	rs144440251	chr1:186355351-186355352	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
49	rs568377864	chr1:186355400-186355401	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
50	rs570752597	chr1:186355460-186355461	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:87)

Disease	PMID	Source
Breast cancer	17603634	CNVD
Esophageal squamous carcinoma	21637470	CNVD
HIV/AIDS	22032296	CNVD
Schizophrenia	19415332	CNVD
Autism	22495311	CNVD
Liposarcoma	21253554	CNVD
Burkitt''s lymphoma	18698080	CNVD
Melanoma	18172304	CNVD
Rett syndrome	21593744	CNVD
Cancer	20164919	CNVD
Medulloblastoma	21979893	CNVD
Acute lymphoblastic leukemia	17443227	CNVD
Wilms tumour	21544195	CNVD
Breast cancer	17133270	CNVD
Carcinoma ex pleomorphic adenoma	18828159	CNVD
Non-small cell lung cancer	21044232	CNVD
Cervical cancer	21063398	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	20632083	CNVD
Endometrial cancer	22040021	CNVD
Ewing''s sarcoma	21437220	CNVD
Gastrointestinal stromal cancer	20470368	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	21080181	CNVD
Hepatocellular carcinoma	22174799	CNVD
Medulloblastoma	21292688	CNVD
Phyllodes tumor	17334353	CNVD
Breast cancer	21264507	CNVD
Multiple myeloma	21628407	CNVD
Cancer	16751803	CNVD
Prostate cancer	16705090	CNVD
Neuroblastoma	19435921	CNVD
Breast cancer	17850661	CNVD
Breast cancer	16461572	CNVD
Intracranial tumor	16823260	CNVD
Medulloblastoma	18056178	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Primary mediastinal b-cell lymphoma	17728785	CNVD
Colorectal cancer	16272173	CNVD
Acute lymphoblastic leukemia	21098271	CNVD
Neuroblastoma	21899760	CNVD
Ovarian neoplasms	16753589	CNVD
Glioblastoma multiforme	17002787	CNVD
Breast cancer	21858162	CNVD
Non-small cell lung cancer	21385341	CNVD
Acute lymphoblastic leukemia	21980252	CNVD
Breast cancer	16608533	CNVD
Ewing''s sarcoma	22429812	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Hepatocellular carcinoma	18803288	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Breast cancer	17001317	CNVD
Urothelial carcinoma	21177765	CNVD
Acute myeloid leukemia	21251322	CNVD
Multiple myeloma	17550852	CNVD
Prostate cancer	18632612	CNVD
Acute myeloid leukemia	20729466	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Testicular germ cell tumor	18059402	CNVD
Ependymoma	18628472	CNVD
Leukemia	18628472	CNVD
Neuroblastoma	18923191	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Ewing''s sarcoma	17952124	CNVD
Acute lymphoblastic leukemia	19100363	CNVD
Lung cancer	18438408	CNVD
Breast cancer	21509527	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Metanephric adenoma	20802469	CNVD
Melanoma	20688739	CNVD
small cell lung cancer	20016488	CNVD
Breast cancer	21611746	CNVD
Myelofibrosis	22110671	CNVD
primary effusion lymphomas	17116491	CNVD
Breast cancer	17393978	CNVD
Hepatocellular carcinoma	16750200	CNVD
Barrett''s syndrome	19417022	CNVD
Schizophrenia	19197363	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Breast cancer	17899364	CNVD
Non-small cell lung cancer	19010865	CNVD
Mental retardation	17847001	CNVD
Basal cell lymphoma	17170743	CNVD
Follicular lymphoma	17170743	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD

Chromatin state (count:1159 , 50 per page) page: 1 2 3 4 5 6 7 ... 24

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:186345400-186358000	Weak transcription	Left Ventricle	heart
2	chr1:186345400-186358600	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr1:186345400-186359000	Weak transcription	Lung	lung
4	chr1:186345400-186371600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr1:186345400-186371600	Weak transcription	Esophagus	oesophagus
6	chr1:186345400-186371600	Weak transcription	Gastric	stomach
7	chr1:186345400-186390600	Weak transcription	Small Intestine	intestine
8	chr1:186345400-186398200	Weak transcription	Spleen	Spleen
9	chr1:186345800-186361200	Weak transcription	Aorta	Aorta
10	chr1:186345800-186377400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr1:186346000-186366800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
12	chr1:186346200-186357400	Weak transcription	Rectal Smooth Muscle	rectum
13	chr1:186346200-186357800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr1:186346200-186357800	Weak transcription	Brain Anterior Caudate	brain
15	chr1:186346200-186357800	Weak transcription	Fetal Kidney	kidney
16	chr1:186346200-186359000	Weak transcription	Brain Cingulate Gyrus	brain
17	chr1:186346200-186359000	Weak transcription	Ovary	ovary
18	chr1:186346200-186359000	Weak transcription	Thymus	Thymus
19	chr1:186346200-186360600	Weak transcription	Brain Substantia Nigra	brain
20	chr1:186346200-186361200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
21	chr1:186346200-186361200	Weak transcription	Pancreas	Pancrea
22	chr1:186346200-186361400	Weak transcription	Right Ventricle	heart
23	chr1:186346200-186365200	Weak transcription	H9 Cell Line	embryonic stem cell
24	chr1:186346200-186365200	Weak transcription	Psoas Muscle	Psoas
25	chr1:186346200-186380400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
26	chr1:186346200-186388400	Weak transcription	Colonic Mucosa	Colon
27	chr1:186346400-186354400	Weak transcription	Skeletal Muscle Male	skeletal muscle
28	chr1:186346400-186357800	Weak transcription	Brain Hippocampus Middle	brain
29	chr1:186346400-186359400	Weak transcription	Brain Inferior Temporal Lobe	brain
30	chr1:186346400-186359400	Weak transcription	Colon Smooth Muscle	Colon
31	chr1:186346400-186361000	Weak transcription	Placenta Amnion	Placenta Amnion
32	chr1:186346400-186361200	Weak transcription	Brain Angular Gyrus	brain
33	chr1:186346400-186376000	Weak transcription	Pancreatic Islets	Pancreatic Islet
34	chr1:186346400-186388000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
35	chr1:186346400-186390000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
36	chr1:186346600-186357400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
37	chr1:186346600-186357400	Weak transcription	Cortex derived primary cultured neurospheres	brain
38	chr1:186346600-186359400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
39	chr1:186346800-186354600	Strong transcription	K562	blood
40	chr1:186346800-186357400	Weak transcription	Stomach Mucosa	stomach
41	chr1:186347000-186357200	Weak transcription	Primary hematopoietic stem cells	blood
42	chr1:186347200-186370800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
43	chr1:186347400-186368000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
44	chr1:186347400-186370400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
45	chr1:186347400-186370400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
46	chr1:186347600-186357800	Weak transcription	NHEK	skin
47	chr1:186347600-186358000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
48	chr1:186347600-186370800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
49	chr1:186348000-186359400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
50	chr1:186348000-186382000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

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