Variant report

Variant	nsv872662
Chromosome Location	chr1:189211622-189741561
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1987)
CpG islands
(count:61)
Chromatin interactive
region (count:91)
LncRNA
region (count:3)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1987 , 50 per page) page: 1 2 3 4 5 6 7 ... 40

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr1:189655218-189655237	K562	blood:	n/a	n/a
2	ARID3A	chr1:189576379-189576601	HepG2	liver:	n/a	n/a
3	ARID3A	chr1:189398814-189399014	HepG2	liver:	n/a	n/a
4	ATF1	chr1:189495461-189495472	K562	blood:	n/a	n/a
5	ATF1	chr1:189692607-189692756	K562	blood:	n/a	n/a
6	ATF1	chr1:189645110-189645131	K562	blood:	n/a	n/a
7	ATF1	chr1:189500705-189500755	K562	blood:	n/a	n/a
8	ATF3	chr1:189576142-189576647	A549	lung:	n/a	n/a
9	ATF3	chr1:189624065-189624449	HCT-116	colon:	n/a	n/a
10	BACH1	chr1:189258605-189258799	K562	blood:	n/a	n/a
11	BACH1	chr1:189389331-189389475	H1-hESC	embryonic stem cell:	n/a	n/a
12	BACH1	chr1:189660033-189660067	K562	blood:	n/a	n/a
13	BATF	chr1:189565411-189565576	GM12878	blood:	n/a	chr1:189565508-189565518
14	BCL3	chr1:189575858-189576821	A549	lung:	n/a	n/a
15	BCL3	chr1:189650561-189651101	A549	lung:	n/a	n/a
16	BRCA1	chr1:189640354-189640407	H1-hESC	embryonic stem cell:	n/a	n/a
17	BRCA1	chr1:189588843-189589197	Hela-S3	cervix:	n/a	n/a
18	CBX3	chr1:189588763-189589390	HCT-116	colon:	n/a	n/a
19	CBX3	chr1:189631288-189631734	HCT-116	colon:	n/a	n/a
20	CBX3	chr1:189627431-189627982	HCT-116	colon:	n/a	n/a
21	CBX3	chr1:189238133-189238458	K562	blood:	n/a	n/a
22	CBX3	chr1:189626762-189627309	HCT-116	colon:	n/a	n/a
23	CBX3	chr1:189238100-189238627	HCT-116	colon:	n/a	n/a
24	CBX3	chr1:189238189-189238535	K562	blood:	n/a	n/a
25	CBX3	chr1:189588801-189589528	HCT-116	colon:	n/a	n/a
26	CBX3	chr1:189631264-189631803	HCT-116	colon:	n/a	n/a
27	CBX3	chr1:189238064-189238627	HCT-116	colon:	n/a	n/a
28	CCNT2	chr1:189281785-189281923	K562	blood:	n/a	n/a
29	CCNT2	chr1:189330861-189331308	K562	blood:	n/a	n/a
30	CEBPB	chr1:189626976-189627210	IMR90	lung:	n/a	n/a
31	CEBPB	chr1:189606177-189606515	Hela-S3	cervix:	n/a	chr1:189606323-189606334
32	CEBPB	chr1:189417425-189417639	HepG2	liver:	n/a	chr1:189417567-189417578 chr1:189417566-189417579
33	CEBPB	chr1:189305304-189305667	HepG2	liver:	n/a	n/a
34	CEBPB	chr1:189731505-189731602	K562	blood:	n/a	chr1:189731575-189731586
35	CEBPB	chr1:189398497-189398930	H1-hESC	embryonic stem cell:	n/a	n/a
36	CEBPB	chr1:189558442-189558746	A549	lung:	n/a	chr1:189558577-189558588
37	CEBPB	chr1:189400595-189400896	MCF-7	breast:	n/a	chr1:189400690-189400701
38	CEBPB	chr1:189558470-189558730	IMR90	lung:	n/a	chr1:189558577-189558588
39	CEBPB	chr1:189499440-189499628	K562	blood:	n/a	n/a
40	CEBPB	chr1:189400510-189400870	IMR90	lung:	n/a	chr1:189400690-189400701
41	CEBPB	chr1:189738620-189739003	IMR90	lung:	n/a	n/a
42	CEBPB	chr1:189626736-189627414	HCT-116	colon:	n/a	chr1:189627200-189627217
43	CEBPB	chr1:189606035-189606521	A549	lung:	n/a	chr1:189606323-189606334
44	CEBPB	chr1:189346049-189346081	H1-hESC	embryonic stem cell:	n/a	chr1:189346050-189346061
45	CEBPB	chr1:189626830-189627327	MCF-7	breast:	n/a	chr1:189627200-189627217
46	CEBPB	chr1:189718442-189718647	HepG2	liver:	n/a	chr1:189718486-189718497
47	CEBPB	chr1:189519100-189519291	H1-hESC	embryonic stem cell:	n/a	n/a
48	CEBPB	chr1:189576169-189576599	A549	lung:	n/a	n/a
49	CEBPB	chr1:189398464-189398750	K562	blood:	n/a	n/a
50	CEBPB	chr1:189738746-189738942	A549	lung:	n/a	n/a

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr1:189722103-189722153	HNPCEpiC	eye:	n/a
2	chr1:189722103-189722153	GM06990	blood:	n/a
3	chr1:189722103-189722153	HUVEC	blood vessel:	n/a
4	chr1:189722103-189722153	GM12891	blood:	n/a
5	chr1:189722103-189722153	LNCaP	prostate:	n/a
6	chr1:189722103-189722153	Caco-2	colon:	n/a
7	chr1:189722103-189722153	RPTEC	kidney:	n/a
8	chr1:189722103-189722153	PANC-1	pancreas:	n/a
9	chr1:189722103-189722153	GM19239	blood:	n/a
10	chr1:189722103-189722153	HEK293	kidney:	embryo
11	chr1:189722103-189722153	IMR90	lung:	fetal
12	chr1:189722103-189722153	GM12892	blood:	n/a
13	chr1:189722103-189722153	K562	blood:	n/a
14	chr1:189722103-189722153	NHDF-neo	bronchial:	n/a
15	chr1:189722103-189722153	Hela-S3	cervix:	n/a
16	chr1:189722103-189722153	ovcar-3	ovarian:	n/a
17	chr1:189722103-189722153	SAEC	small airway:	n/a
18	chr1:189722103-189722153	PFSK-1	brain:	n/a
19	chr1:189722103-189722153	HL-60	blood:	n/a
20	chr1:189722103-189722153	HEEpiC	esophagus:	n/a
21	chr1:189722103-189722153	SKMC	muscle:	n/a
22	chr1:189722103-189722153	CMK	blood:	n/a
23	chr1:189722103-189722153	Jurkat	blood:	n/a
24	chr1:189722103-189722153	BE2_C	brain:	n/a
25	chr1:189722103-189722153	AG10803	skin:	n/a
26	chr1:189722103-189722153	HCPEpiC	choroid plexus:	n/a
27	chr1:189722103-189722153	HCF	heart:	n/a
28	chr1:189722103-189722153	MCF10A-Er-Src	breast:	n/a
29	chr1:189722103-189722153	HIPEpiC	eye:	n/a
30	chr1:189722103-189722153	HPAEpiC	pulmonary alveolar:	n/a
31	chr1:189722103-189722153	U87	brain:	n/a
32	chr1:189722103-189722153	HMEC	breast:	n/a
33	chr1:189722103-189722153	HRPEpiC	eye:	n/a
34	chr1:189722103-189722153	AG09309	skin:	n/a
35	chr1:189722103-189722153	BJ	skin:	n/a
36	chr1:189722103-189722153	SK-N-SH	brain:	n/a
37	chr1:189722103-189722153	MCF-7	breast:	n/a
38	chr1:189722103-189722153	AoSMC	blood vessel:	n/a
39	chr1:189722103-189722153	ECC-1	luminal epithelium:	n/a
40	chr1:189722103-189722153	ProgFib	skin:	n/a
41	chr1:189722103-189722153	SK-N-MC	brain:	n/a
42	chr1:189722103-189722153	HRCEpiC	kidney:	n/a
43	chr1:189722103-189722153	AG04450	lung:	fetal
44	chr1:189722103-189722153	NHBE	bronchial:	n/a
45	chr1:189722103-189722153	HAEpiC	amniotic membrane:	n/a
46	chr1:189722103-189722153	T-47D	breast:	n/a
47	chr1:189722103-189722153	A549	lung:	n/a
48	chr1:189722103-189722153	NH-A	brain:	n/a
49	chr1:189722103-189722153	Hepatocyte	liver:	n/a
50	chr1:189722103-189722153	NB4	blood:	n/a

(count:91 , 50 per page) page: 1 2

No.	Distal block	Cell Line	Cell type
1	chr1:189588020..189590795-chr1:189591484..189594244,3	MCF-7	breast:
2	chr1:189511503..189514474-chr1:189516095..189518891,2	MCF-7	breast:
3	chr1:189705345..189707314-chr1:189708117..189710746,3	MCF-7	breast:
4	chr1:189646033..189647879-chr5:175874488..175876371,2	MCF-7	breast:
5	chr1:189121464..189123287-chr1:189388904..189390413,2	K562	blood:
6	chr1:189240516..189243229-chr1:189245624..189247512,2	K562	blood:
7	chr1:189275475..189276987-chr1:189302090..189304788,2	K562	blood:
8	chr1:189677420..189678491-chr1:190289916..190290952,3	MCF-7	breast:
9	chr1:189416774..189418507-chr1:189422911..189425482,2	K562	blood:
10	chr1:189249441..189251122-chr1:189253559..189256297,2	K562	blood:
11	chr1:189581455..189584315-chr1:189585168..189587493,2	K562	blood:
12	chr1:189608651..189610421-chr1:189613616..189615684,2	K562	blood:
13	chr1:189398408..189399387-chr1:189661985..189662829,2	MCF-7	breast:
14	chr1:189589226..189590045-chr1:189662088..189662866,2	MCF-7	breast:
15	chr1:189581455..189584315-chr1:189585168..189587493,2	K562	blood:
16	chr1:189672702..189674835-chr1:189679900..189682761,2	MCF-7	breast:
17	chr1:189624367..189627091-chr1:189650312..189652304,2	MCF-7	breast:
18	chr1:189399166..189401720-chr1:189433273..189435659,2	K562	blood:
19	chr1:189624367..189627091-chr1:189650312..189652304,2	MCF-7	breast:
20	chr1:189617058..189619904-chr1:189621793..189623517,2	MCF-7	breast:
21	chr1:189390529..189394907-chr1:189395498..189400534,5	K562	blood:
22	chr1:189248572..189251429-chr1:189254137..189256255,2	MCF-7	breast:
23	chr1:189740038..189741669-chr1:189745873..189748337,2	K562	blood:
24	chr1:189398245..189398855-chr3:191237330..191238213,2	MCF-7	breast:
25	chr1:189398752..189399352-chr1:190289866..190290710,2	MCF-7	breast:
26	chr1:189705345..189707314-chr1:189708117..189710746,3	MCF-7	breast:
27	chr1:189475496..189478003-chr1:189479734..189481835,2	K562	blood:
28	chr1:189240516..189243229-chr1:189245624..189247512,2	K562	blood:
29	chr1:188746632..188749210-chr1:189368064..189370522,2	K562	blood:
30	chr1:189398440..189399083-chr1:189642226..189643036,4	MCF-7	breast:
31	chr1:189189341..189190044-chr1:189398354..189398974,2	MCF-7	breast:
32	chr1:189589226..189590045-chr1:189662088..189662866,2	MCF-7	breast:
33	chr1:189416774..189418507-chr1:189422911..189425482,2	K562	blood:
34	chr1:189205219..189208075-chr1:189212130..189213812,2	K562	blood:
35	chr1:189389640..189390412-chr9:79530846..79531642,2	MCF-7	breast:
36	chr1:189608651..189610421-chr1:189613616..189615684,2	K562	blood:
37	chr1:189534638..189536257-chr1:189546205..189548519,2	K562	blood:
38	chr1:189677502..189678569-chr1:190053452..190054228,3	MCF-7	breast:
39	chr1:189705156..189706947-chr1:189708552..189710958,2	K562	blood:
40	chr1:189248572..189251429-chr1:189254137..189256255,2	MCF-7	breast:
41	chr1:189118996..189121109-chr1:189287929..189290792,2	K562	blood:
42	chr1:189511503..189514474-chr1:189516095..189518891,2	MCF-7	breast:
43	chr1:189272043..189274653-chr1:189278886..189280398,2	MCF-7	breast:
44	chr1:189475496..189478003-chr1:189479734..189481835,2	K562	blood:
45	chr1:189398440..189399083-chr1:189642226..189643036,4	MCF-7	breast:
46	chr1:188762438..188765055-chr1:189455240..189458166,2	MCF-7	breast:
47	chr1:189241863..189244063-chr1:189280100..189282823,2	K562	blood:
48	chr1:189625524..189628069-chr1:189701890..189703665,2	MCF-7	breast:
49	chr1:189236800..189238519-chr1:189240063..189242886,2	MCF-7	breast:
50	chr1:189249441..189251122-chr1:189253559..189256297,2	K562	blood:

(count:3 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-PLA2G4A-18	chr1:189464076-189464220	NONHSAT008485
2	lnc-PLA2G4A-18	chr1:189456912-189457065	NONHSAT008485
3	lnc-PLA2G4A-7	chr1:189276860-189277008	NONHSAT008484

No data

Variant related genes	Relation type
RNA5SP73	TF binding region
ENSG00000232212	TF binding region
RNA5SP73	CpG island
ENSG00000232212	CpG island
ENSG00000113194	chromatin interactions
ENSG00000137947	chromatin interactions
ENSG00000252553	chromatin interactions

Extended variants
information (count: 4135 )
Associated
traits (count: 93 )

Variant overlapped rSNPs/rCNVs (count:4135 , 50 per page) page: 1 2 3 4 5 6 7 ... 83

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs191647555	chr1:189237006-189237007	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
2	rs144815833	chr1:189237049-189237050	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
3	rs184190066	chr1:189237082-189237083	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
4	rs556485699	chr1:189237122-189237123	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
5	rs576295423	chr1:189237140-189237141	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
6	rs541790016	chr1:189237167-189237168	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
7	rs545212250	chr1:189237187-189237188	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
8	rs574286958	chr1:189237206-189237207	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
9	rs1578704	chr1:189237212-189237213	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
10	rs572025560	chr1:189237249-189237250	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
11	rs189061624	chr1:189237257-189237258	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
12	rs563841955	chr1:189237276-189237277	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
13	rs1578705	chr1:189237277-189237278	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
14	rs543650387	chr1:189237299-189237300	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
15	rs1578706	chr1:189237363-189237364	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
16	rs148511147	chr1:189237392-189237393	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
17	rs560906349	chr1:189237393-189237394	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
18	rs181728813	chr1:189237401-189237402	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
19	rs527966876	chr1:189237410-189237411	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
20	rs528495508	chr1:189237443-189237444	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
21	rs551898961	chr1:189237451-189237452	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
22	rs571808481	chr1:189237457-189237458	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
23	rs145333408	chr1:189237475-189237476	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
24	rs531196485	chr1:189237479-189237480	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
25	rs11801777	chr1:189237480-189237481	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
26	rs569855648	chr1:189237515-189237516	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
27	rs535355614	chr1:189237517-189237518	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
28	rs114893170	chr1:189237519-189237520	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
29	rs571661338	chr1:189237523-189237524	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
30	rs185598691	chr1:189237542-189237543	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
31	rs565436926	chr1:189237581-189237582	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
32	rs190271528	chr1:189237609-189237610	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
33	rs577346416	chr1:189237634-189237635	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
34	rs147698513	chr1:189237676-189237677	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
35	rs532708131	chr1:189237700-189237701	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
36	rs182446008	chr1:189237719-189237720	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
37	rs12057910	chr1:189237729-189237730	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
38	rs563696328	chr1:189237749-189237750	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
39	rs77019374	chr1:189237817-189237818	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
40	rs185785571	chr1:189237820-189237821	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
41	rs536367904	chr1:189237831-189237832	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
42	rs560039452	chr1:189237838-189237839	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
43	rs371671382	chr1:189237846-189237847	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
44	rs565936781	chr1:189237849-189237850	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
45	rs530098726	chr1:189237864-189237865	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
46	rs528483250	chr1:189237887-189237888	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
47	rs140843088	chr1:189237904-189237905	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
48	rs1418546	chr1:189237907-189237908	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
49	rs189718385	chr1:189237924-189237925	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
50	rs551072880	chr1:189237977-189237978	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:93)

Disease	PMID	Source
Breast cancer	17603634	CNVD
Esophageal squamous carcinoma	21637470	CNVD
HIV/AIDS	22032296	CNVD
Schizophrenia	19415332	CNVD
Autism	22495311	CNVD
Liposarcoma	21253554	CNVD
Burkitt''s lymphoma	18698080	CNVD
Melanoma	18172304	CNVD
Rett syndrome	21593744	CNVD
Cancer	20164919	CNVD
Medulloblastoma	21979893	CNVD
Acute lymphoblastic leukemia	17443227	CNVD
Wilms tumour	21544195	CNVD
Breast cancer	17133270	CNVD
Carcinoma ex pleomorphic adenoma	18828159	CNVD
Non-small cell lung cancer	21044232	CNVD
Cervical cancer	21063398	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	20632083	CNVD
Endometrial cancer	22040021	CNVD
Ewing''s sarcoma	21437220	CNVD
Gastrointestinal stromal cancer	20470368	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	21080181	CNVD
Hepatocellular carcinoma	22174799	CNVD
Medulloblastoma	21292688	CNVD
Phyllodes tumor	17334353	CNVD
Breast cancer	21264507	CNVD
Multiple myeloma	21628407	CNVD
Cancer	16751803	CNVD
Prostate cancer	16705090	CNVD
Neuroblastoma	19435921	CNVD
Breast cancer	17850661	CNVD
Breast cancer	16461572	CNVD
Intracranial tumor	16823260	CNVD
Medulloblastoma	18056178	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Primary mediastinal b-cell lymphoma	17728785	CNVD
Colorectal cancer	16272173	CNVD
Acute lymphoblastic leukemia	21098271	CNVD
Neuroblastoma	21899760	CNVD
Ovarian neoplasms	16753589	CNVD
Glioblastoma multiforme	17002787	CNVD
Breast cancer	21858162	CNVD
Non-small cell lung cancer	21385341	CNVD
Acute lymphoblastic leukemia	21980252	CNVD
Breast cancer	16608533	CNVD
Ewing''s sarcoma	22429812	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Hepatocellular carcinoma	18803288	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Breast cancer	17001317	CNVD
Acute myeloid leukemia	21251322	CNVD
Multiple myeloma	17550852	CNVD
Prostate cancer	18632612	CNVD
Acute myeloid leukemia	20729466	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Testicular germ cell tumor	18059402	CNVD
Ependymoma	18628472	CNVD
Leukemia	18628472	CNVD
Neuroblastoma	18923191	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Ewing''s sarcoma	17952124	CNVD
Acute lymphoblastic leukemia	19100363	CNVD
Lung cancer	18438408	CNVD
Breast cancer	21509527	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Metanephric adenoma	20802469	CNVD
Melanoma	20688739	CNVD
small cell lung cancer	20016488	CNVD
Breast cancer	21611746	CNVD
primary effusion lymphomas	17116491	CNVD
Breast cancer	17393978	CNVD
Hepatocellular carcinoma	16750200	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Breast cancer	17899364	CNVD
Non-small cell lung cancer	19010865	CNVD
Mental retardation	17847001	CNVD
Basal cell lymphoma	17170743	CNVD
Follicular lymphoma	17170743	CNVD
Trisomy 5 syndrome	21098271	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Cutaneous T-cell lymphoma	21881587	CNVD
Lung adenocarcinoma	17086460	CNVD
Glioblastoma multiforme	22286061	CNVD
Pancreatic ductal adenocarcinoma	19077451	CNVD
early-passage human iPS cells	21368824	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD
Non-syndromic sensorineural hearing loss	18451855	CNVD
Pancreatic cancer	17952125	CNVD
Breast cancer	22522925	CNVD

Chromatin state (count:269 , 50 per page) page: 1 2 3 4 5 6

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:189237000-189237200	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
2	chr1:189237000-189237400	ZNF genes & repeats	Liver	Liver
3	chr1:189237200-189237800	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
4	chr1:189237200-189238800	ZNF genes & repeats	Adipose Nuclei	Adipose
5	chr1:189280800-189281600	Enhancers	iPS-15b Cell Line	embryonic stem cell
6	chr1:189281000-189281200	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr1:189281000-189281200	Enhancers	iPS-20b Cell Line	embryonic stem cell
8	chr1:189281000-189281400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr1:189281000-189282200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr1:189281000-189283400	Enhancers	K562	blood
11	chr1:189281200-189281600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr1:189281200-189282200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
13	chr1:189281400-189281600	Enhancers	iPS-18 Cell Line	embryonic stem cell
14	chr1:189281400-189281800	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr1:189281400-189282400	Weak transcription	HUES64 Cell Line	embryonic stem cell
16	chr1:189281400-189283000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr1:189281600-189282600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
18	chr1:189281600-189283600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
19	chr1:189281600-189284600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr1:189281800-189282400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr1:189281800-189283000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr1:189281800-189283000	Enhancers	Liver	Liver
23	chr1:189282200-189283600	Enhancers	iPS-20b Cell Line	embryonic stem cell
24	chr1:189282200-189284800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr1:189282400-189282800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr1:189282400-189283200	Enhancers	ES-I3 Cell Line	embryonic stem cell
27	chr1:189282400-189285200	Enhancers	HUES64 Cell Line	embryonic stem cell
28	chr1:189282600-189285000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
29	chr1:189282600-189285400	Enhancers	HUES48 Cell Line	embryonic stem cell
30	chr1:189282600-189285400	Enhancers	iPS-18 Cell Line	embryonic stem cell
31	chr1:189282800-189283000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr1:189283000-189283400	Weak transcription	Liver	Liver
33	chr1:189283000-189284200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
34	chr1:189283000-189285000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr1:189283200-189285000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
36	chr1:189283200-189285200	Enhancers	HUES6 Cell Line	embryonic stem cell
37	chr1:189283400-189285400	Enhancers	Liver	Liver
38	chr1:189283600-189284000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
39	chr1:189283600-189285400	Enhancers	iPS-15b Cell Line	embryonic stem cell
40	chr1:189284000-189285200	Enhancers	iPS-20b Cell Line	embryonic stem cell
41	chr1:189284200-189285400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
42	chr1:189284400-189285000	Enhancers	Brain Germinal Matrix	brain
43	chr1:189284600-189285400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
44	chr1:189284800-189285800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr1:189285000-189285400	Enhancers	ES-I3 Cell Line	embryonic stem cell
46	chr1:189285000-189285800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr1:189285000-189287400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
48	chr1:189305000-189305800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
49	chr1:189305200-189305400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
50	chr1:189305400-189305600	Flanking Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links