Variant report

Variant	nsv872751
Chromosome Location	chr1:189973857-190070919
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr1:189897967..189900169-chr1:190054489..190056512,2	MCF-7	breast:
2	chr1:190011663..190013449-chr1:190017469..190019523,2	K562	blood:
3	chr1:190055531..190057704-chr1:190069392..190071855,2	MCF-7	breast:
4	chr1:189955705..189957975-chr1:189976972..189978590,2	K562	blood:
5	chr1:190055531..190057704-chr1:190069392..190071855,2	MCF-7	breast:
6	chr1:190011663..190013449-chr1:190017469..190019523,2	K562	blood:
7	chr1:190068465..190070219-chr1:190071974..190074845,2	MCF-7	breast:
8	chr1:189677502..189678569-chr1:190053452..190054228,3	MCF-7	breast:
9	chr1:190017220..190019071-chr1:190031921..190033627,2	MCF-7	breast:
10	chr1:190017220..190019071-chr1:190031921..190033627,2	MCF-7	breast:

No data

Extended variants
information (count: 1478 )
Associated
traits (count: 87 )

Variant overlapped rSNPs/rCNVs (count:1478 , 50 per page) page: 1 2 3 4 5 6 7 ... 30

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs554781007	chr1:189979001-189979002	Enhancers	n/a	n/a	Overlapped CNVs	n/a
2	rs574588591	chr1:189979060-189979061	Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs540331059	chr1:189979118-189979119	Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs6427929	chr1:189979144-189979145	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
5	rs111810292	chr1:189979147-189979148	Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs540140623	chr1:189979240-189979241	Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs549538882	chr1:189979246-189979247	Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs369673041	chr1:189979273-189979274	Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs77093958	chr1:189979295-189979296	Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs111326910	chr1:189979300-189979301	Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs373548481	chr1:189979317-189979318	Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs144748971	chr1:189979338-189979339	Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs6677555	chr1:189979349-189979350	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
14	rs529770538	chr1:189979397-189979398	Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs559991609	chr1:189983003-189983004	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs528583363	chr1:189983044-189983045	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs12029208	chr1:189983057-189983058	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
18	rs565265121	chr1:189983062-189983063	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs12127156	chr1:189983063-189983064	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs190235740	chr1:189983090-189983091	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs201766213	chr1:189983107-189983108	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs386369103	chr1:189983108-189983109	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs376240411	chr1:189983110-189983111	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs71123053	chr1:189983111-189983112	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs11585559	chr1:189983123-189983124	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
26	rs535368288	chr1:189983135-189983136	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs548766461	chr1:189983137-189983138	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs114183159	chr1:189983148-189983149	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs534701835	chr1:189983155-189983156	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs557596689	chr1:189983157-189983158	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs75389481	chr1:189983195-189983196	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs73052707	chr1:189983201-189983202	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
33	rs557005896	chr1:189983204-189983205	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs574336095	chr1:189983212-189983213	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs183615825	chr1:189983213-189983214	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs188554455	chr1:189983252-189983253	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs537932837	chr1:189983260-189983261	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs77982272	chr1:189983283-189983284	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs545461048	chr1:189983286-189983287	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs112291550	chr1:189983293-189983294	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs375553998	chr1:189983308-189983309	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs531047786	chr1:189983310-189983311	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs193155228	chr1:189983340-189983341	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs11579898	chr1:189983346-189983347	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
45	rs560997106	chr1:189983361-189983362	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs529145324	chr1:189983450-189983451	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs544951499	chr1:189983490-189983491	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs183662182	chr1:189983555-189983556	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs12082901	chr1:189983572-189983573	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
50	rs551570204	chr1:189983573-189983574	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:87)

Disease	PMID	Source
Breast cancer	17603634	CNVD
Esophageal squamous carcinoma	21637470	CNVD
HIV/AIDS	22032296	CNVD
Schizophrenia	19415332	CNVD
Autism	22495311	CNVD
Liposarcoma	21253554	CNVD
Burkitt''s lymphoma	18698080	CNVD
Melanoma	18172304	CNVD
Rett syndrome	21593744	CNVD
Cancer	20164919	CNVD
Medulloblastoma	21979893	CNVD
Acute lymphoblastic leukemia	17443227	CNVD
Wilms tumour	21544195	CNVD
Breast cancer	17133270	CNVD
Carcinoma ex pleomorphic adenoma	18828159	CNVD
Non-small cell lung cancer	21044232	CNVD
Cervical cancer	21063398	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	20632083	CNVD
Endometrial cancer	22040021	CNVD
Ewing''s sarcoma	21437220	CNVD
Gastrointestinal stromal cancer	20470368	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	21080181	CNVD
Hepatocellular carcinoma	22174799	CNVD
Medulloblastoma	21292688	CNVD
Phyllodes tumor	17334353	CNVD
Breast cancer	21264507	CNVD
Multiple myeloma	21628407	CNVD
Cancer	16751803	CNVD
Prostate cancer	16705090	CNVD
Neuroblastoma	19435921	CNVD
Breast cancer	17850661	CNVD
Breast cancer	16461572	CNVD
Intracranial tumor	16823260	CNVD
Medulloblastoma	18056178	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Primary mediastinal b-cell lymphoma	17728785	CNVD
Colorectal cancer	16272173	CNVD
Acute lymphoblastic leukemia	21098271	CNVD
Neuroblastoma	21899760	CNVD
Ovarian neoplasms	16753589	CNVD
Glioblastoma multiforme	17002787	CNVD
Breast cancer	21858162	CNVD
Non-small cell lung cancer	21385341	CNVD
Acute lymphoblastic leukemia	21980252	CNVD
Breast cancer	16608533	CNVD
Ewing''s sarcoma	22429812	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Hepatocellular carcinoma	18803288	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Breast cancer	17001317	CNVD
Acute myeloid leukemia	21251322	CNVD
Multiple myeloma	17550852	CNVD
Prostate cancer	18632612	CNVD
Acute myeloid leukemia	20729466	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Testicular germ cell tumor	18059402	CNVD
Ependymoma	18628472	CNVD
Leukemia	18628472	CNVD
Neuroblastoma	18923191	CNVD
Acute lymphoblastic leukemia	19100363	CNVD
Lung cancer	18438408	CNVD
Breast cancer	21509527	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Metanephric adenoma	20802469	CNVD
Melanoma	20688739	CNVD
small cell lung cancer	20016488	CNVD
Breast cancer	21611746	CNVD
primary effusion lymphomas	17116491	CNVD
Breast cancer	17393978	CNVD
Hepatocellular carcinoma	16750200	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Breast cancer	17899364	CNVD
Non-small cell lung cancer	19010865	CNVD
Mental retardation	17847001	CNVD
Basal cell lymphoma	17170743	CNVD
Follicular lymphoma	17170743	CNVD
Trisomy 5 syndrome	21098271	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Cutaneous T-cell lymphoma	21881587	CNVD
Lung adenocarcinoma	17086460	CNVD
Glioblastoma multiforme	22286061	CNVD
Chronic lymphocytic leukemia	22228453	CNVD
Non-syndromic sensorineural hearing loss	21293372	CNVD

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:189979000-189979400	Enhancers	HUES48 Cell Line	embryonic stem cell
2	chr1:189983000-189986200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr1:189985800-189986600	Enhancers	A549	lung
4	chr1:189986600-189989000	Weak transcription	A549	lung
5	chr1:189988400-189988800	Active TSS	Placenta	Placenta
6	chr1:189988800-189990000	Enhancers	Placenta	Placenta
7	chr1:189989000-189989200	Flanking Active TSS	A549	lung
8	chr1:189989200-189989600	Active TSS	A549	lung
9	chr1:189989600-189990400	Enhancers	A549	lung
10	chr1:189990400-189991400	Weak transcription	A549	lung
11	chr1:189991400-189992200	Enhancers	A549	lung
12	chr1:190006600-190007200	Enhancers	HUES64 Cell Line	embryonic stem cell
13	chr1:190006600-190007200	Enhancers	iPS-15b Cell Line	embryonic stem cell
14	chr1:190007200-190020600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
15	chr1:190016000-190016800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr1:190016000-190016800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr1:190018600-190018800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr1:190018800-190021200	Enhancers	Muscle Satellite Cultured Cells	--
19	chr1:190019600-190019800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
20	chr1:190019800-190021400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
21	chr1:190020400-190021800	Enhancers	HUES48 Cell Line	embryonic stem cell
22	chr1:190020600-190021200	Enhancers	iPS-15b Cell Line	embryonic stem cell
23	chr1:190021000-190021400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr1:190021400-190021800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
25	chr1:190036200-190036600	Enhancers	Fetal Intestine Large	intestine
26	chr1:190036200-190037000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr1:190036200-190037600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
28	chr1:190036600-190036800	Enhancers	Muscle Satellite Cultured Cells	--
29	chr1:190037400-190037600	Enhancers	Muscle Satellite Cultured Cells	--
30	chr1:190053600-190054200	Enhancers	Placenta	Placenta
31	chr1:190062600-190063000	Enhancers	Fetal Intestine Small	intestine
32	chr1:190062800-190063000	Enhancers	Fetal Intestine Large	intestine
33	chr1:190063000-190067200	Weak transcription	Fetal Intestine Small	intestine
34	chr1:190063200-190065000	Weak transcription	Fetal Intestine Large	intestine
35	chr1:190065000-190065200	Enhancers	Fetal Intestine Large	intestine
36	chr1:190065200-190067200	Weak transcription	Fetal Intestine Large	intestine
37	chr1:190065400-190067000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
38	chr1:190066400-190068800	Weak transcription	Colonic Mucosa	Colon
39	chr1:190067000-190068000	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
40	chr1:190067000-190068000	Enhancers	HepG2	liver
41	chr1:190067200-190068200	Strong transcription	Fetal Intestine Large	intestine
42	chr1:190067200-190068200	ZNF genes & repeats	Fetal Intestine Small	intestine
43	chr1:190068000-190068200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
44	chr1:190068000-190071800	Weak transcription	HepG2	liver
45	chr1:190068000-190085600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
46	chr1:190068200-190069200	Weak transcription	Fetal Intestine Small	intestine
47	chr1:190068200-190079400	Weak transcription	Fetal Intestine Large	intestine

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