Variant report

Variant	nsv873621
Chromosome Location	chr2:9924387-9954598
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:119)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:119 , 50 per page) page: 1 2 3

No.	Distal block	Cell Line	Cell type
1	chr2:9952588..9955831-chr2:9967859..9972229,5	MCF-7	breast:
2	chr2:9939520..9941287-chr2:10187476..10189009,2	MCF-7	breast:
3	chr2:9921109..9922678-chr2:9930407..9932418,2	K562	blood:
4	chr2:9945778..9947307-chr2:9981778..9983371,2	K562	blood:
5	chr2:9924453..9926268-chr2:9927914..9930082,2	K562	blood:
6	chr2:9942046..9945033-chr2:9945080..9947215,2	K562	blood:
7	chr2:9936512..9939080-chr2:9983882..9985731,2	MCF-7	breast:
8	chr2:9936599..9939944-chr2:10182604..10184557,3	MCF-7	breast:
9	chr2:9613783..9615988-chr2:9938287..9940295,2	MCF-7	breast:
10	chr2:9938188..9943513-chr2:9981101..9985006,11	MCF-7	breast:
11	chr2:9952816..9955217-chr2:10179305..10181124,2	K562	blood:
12	chr2:9948978..9951882-chr2:10166549..10169090,2	MCF-7	breast:
13	chr2:9953518..9955551-chr2:9982187..9983983,2	K562	blood:
14	chr2:9921109..9926354-chr2:9930407..9935197,5	K562	blood:
15	chr2:9939277..9941879-chr2:9968461..9972329,3	K562	blood:
16	chr2:9947583..9953611-chr2:9980461..9984922,8	MCF-7	breast:
17	chr2:9948773..9949474-chr2:9970552..9971153,2	MCF-7	breast:
18	chr2:9916325..9919455-chr2:9921227..9924824,4	MCF-7	breast:
19	chr2:9939487..9940276-chr2:9953657..9954192,2	MCF-7	breast:
20	chr2:9954081..9954722-chr5:16726991..16727551,2	MCF-7	breast:
21	chr2:9930227..9931961-chr2:9935791..9937908,2	K562	blood:
22	chr2:9939775..9940459-chr2:9953750..9954369,2	MCF-7	breast:
23	chr2:9940223..9941926-chr2:10166212..10168564,2	MCF-7	breast:
24	chr2:9942291..9943887-chr2:10083630..10085940,2	MCF-7	breast:
25	chr2:9939487..9940276-chr2:9953657..9954192,2	MCF-7	breast:
26	chr2:9925610..9927951-chr2:9929865..9931540,2	MCF-7	breast:
27	chr2:9925610..9927951-chr2:9929865..9931540,2	MCF-7	breast:
28	chr2:9937709..9940451-chr2:10113926..10116803,3	MCF-7	breast:
29	chr2:9944322..9946964-chr2:10159875..10162614,2	MCF-7	breast:
30	chr2:9953533..9955150-chr2:10188521..10190837,2	K562	blood:
31	chr11:73087007..73087996-chr2:9941372..9942043,2	Hela-S3	cervix:
32	chr2:9940003..9944697-chr2:9981835..9986230,10	MCF-7	breast:
33	chr2:9948192..9950621-chr2:10182726..10184931,3	MCF-7	breast:
34	chr2:9942046..9945033-chr2:9945080..9947215,2	K562	blood:
35	chr2:9948070..9949733-chr2:10038866..10041132,2	K562	blood:
36	chr2:9954494..9957108-chr2:10173352..10175994,2	K562	blood:
37	chr2:9939512..9940829-chr2:10188327..10189449,5	MCF-7	breast:
38	chr2:9953510..9955032-chr2:9983493..9985198,2	MCF-7	breast:
39	chr2:9953957..9955549-chr2:9981308..9984882,3	MCF-7	breast:
40	chr2:9907890..9909492-chr2:9937494..9939085,2	MCF-7	breast:
41	chr2:9919839..9921691-chr2:9937191..9939012,2	MCF-7	breast:
42	chr2:9933200..9936556-chr2:9937201..9939703,3	K562	blood:
43	chr2:9954551..9956379-chr2:9958340..9960055,2	K562	blood:
44	chr2:9945375..9947276-chr2:9949205..9951851,2	K562	blood:
45	chr2:9945976..9947561-chr2:9982451..9984203,2	MCF-7	breast:
46	chr2:9953287..9954158-chr2:10212428..10212955,2	K562	blood:
47	chr2:9937133..9939802-chr2:9958329..9960666,2	MCF-7	breast:
48	chr2:9938284..9940065-chr2:10092605..10094538,2	MCF-7	breast:
49	chr2:9939991..9942900-chr2:10036080..10038755,2	MCF-7	breast:
50	chr2:9933790..9936191-chr2:9936744..9939600,3	MCF-7	breast:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-TAF1B-3	chr2:9934435-9934688	expReg_chr2_232_+

No data

Variant related genes	Relation type
ENSG00000172059	chromatin interactions
ENSG00000134317	chromatin interactions
ENSG00000260077	chromatin interactions
ENSG00000115750	chromatin interactions
ENSG00000054967	chromatin interactions
ENSG00000271855	chromatin interactions
ENSG00000260476	chromatin interactions
ENSG00000257135	chromatin interactions
ENSG00000243491	chromatin interactions
ENSG00000171848	chromatin interactions
ENSG00000115758	chromatin interactions
ENSG00000151694	chromatin interactions
ENSG00000134330	chromatin interactions
ENSG00000272524	chromatin interactions

Extended variants
information (count: 1376 )
Associated
traits (count: 60 )

Variant overlapped rSNPs/rCNVs (count:1376 , 50 per page) page: 1 2 3 4 5 6 7 ... 28

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs2357266	chr2:9924387-9924388	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance disease
2	rs532734580	chr2:9924388-9924389	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
3	rs146102163	chr2:9924409-9924410	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
4	rs566010864	chr2:9924410-9924411	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
5	rs535025910	chr2:9924484-9924485	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
6	rs138943783	chr2:9924524-9924525	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
7	rs113085289	chr2:9924525-9924526	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
8	rs192733998	chr2:9924532-9924533	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
9	rs372225241	chr2:9924546-9924547	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
10	rs557139254	chr2:9924558-9924559	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
11	rs577287039	chr2:9924568-9924569	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
12	rs546194700	chr2:9924569-9924570	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
13	rs184701612	chr2:9924574-9924575	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
14	rs141506661	chr2:9924581-9924582	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
15	rs150881817	chr2:9924594-9924595	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
16	rs552768023	chr2:9924602-9924603	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
17	rs562021625	chr2:9924697-9924698	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
18	rs375227026	chr2:9924723-9924724	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
19	rs530580123	chr2:9924743-9924744	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
20	rs34691875	chr2:9924747-9924748	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
21	rs544411944	chr2:9924788-9924789	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
22	rs563999220	chr2:9924865-9924866	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
23	rs532891894	chr2:9924904-9924905	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
24	rs189212804	chr2:9924908-9924909	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
25	rs111475604	chr2:9924930-9924931	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
26	rs180858413	chr2:9924933-9924934	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
27	rs548557857	chr2:9924961-9924962	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
28	rs537010007	chr2:9925008-9925009	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
29	rs13403740	chr2:9925114-9925115	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
30	rs536614124	chr2:9925161-9925162	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
31	rs111280437	chr2:9925239-9925240	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
32	rs556956315	chr2:9925249-9925250	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
33	rs13403857	chr2:9925259-9925260	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
34	rs4669460	chr2:9925313-9925314	Weak transcription	Chromatin interactive region	2 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
35	rs189251213	chr2:9925331-9925332	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
36	rs553401946	chr2:9925346-9925347	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
37	rs573230552	chr2:9925387-9925388	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
38	rs181659149	chr2:9925406-9925407	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
39	rs555341386	chr2:9925417-9925418	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
40	rs575517806	chr2:9925440-9925441	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
41	rs558579532	chr2:9925445-9925446	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
42	rs34227771	chr2:9925449-9925450	Weak transcription	Chromatin interactive region	2 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
43	rs111628175	chr2:9925465-9925466	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
44	rs147351113	chr2:9925470-9925471	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
45	rs371391031	chr2:9925474-9925475	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
46	rs555262102	chr2:9925514-9925515	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
47	rs139495201	chr2:9925520-9925521	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
48	rs554813300	chr2:9925536-9925537	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
49	rs4669461	chr2:9925542-9925543	Weak transcription	Chromatin interactive region	2 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
50	rs540945978	chr2:9925557-9925558	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:60)

Disease	PMID	Source
Breast cancer	17133270	CNVD
Mental retardation	17847001	CNVD
Glioblastoma multiforme	21080181	CNVD
Malignant fibrous histiocytomas	21085701	CNVD
Cancer	20164920	CNVD
Neuroblastoma	21508638	CNVD
Breast cancer	17603634	CNVD
Cancer	16751803	CNVD
Neuroblastoma	16790693	CNVD
Colorectal cancer	16272173	CNVD
Breast cancer	17393978	CNVD
Acute lymphoblastic leukemia	21098271	CNVD
Medulloblastoma	21979893	CNVD
Lynch syndrome	18415027	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Diffuse large b-cell lymphoma	18287131	CNVD
Ovarian neoplasms	16753589	CNVD
Glioblastoma multiforme	17387387	CNVD
Neuroblastoma	17533364	CNVD
Neuroblastoma	18923191	CNVD
Endometrial cancer	22040021	CNVD
Adrenal tumor	17535989	CNVD
Breast cancer	21264507	CNVD
Basal cell lymphoma	17053054	CNVD
Medulloblastoma	17522785	CNVD
Cancer	23418310	CNVD
Ewing''s sarcoma	21437220	CNVD
Ependymoma	16718352	CNVD
small cell lung cancer	20016488	CNVD
Lung cancer	18438408	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute lymphoblastic leukemia	18458336	CNVD
lymphocytic leukemia	21291569	CNVD
Prostate cancer	18632612	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Bladder cancer	21909424	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Intellectual disability	22102821	CNVD
Autism	22495311	CNVD
Cancer	20164919	CNVD
Hodgkin''s lymphoma	18641027	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Breast cancer	21364760	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Follicular lymphoma	20505157	CNVD
Autism	17483303	CNVD
Breast cancer	21804112	CNVD
Myelofibrosis	22110671	CNVD
Glioblastoma multiforme	22286061	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
Glioma	17123091	CNVD
Breast cancer	20409316	CNVD
Multiple myeloma	16616336	CNVD
Myofibroblastic sarcoma	19369631	CNVD
Neuroblastoma	18923524	CNVD
Breast cancer	22522925	CNVD
Pancreatic cancer	17952125	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD

Chromatin state (count:930 , 50 per page) page: 1 2 3 4 5 6 7 ... 19

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:9915000-9924800	Weak transcription	Left Ventricle	heart
2	chr2:9919400-9927000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr2:9922600-9927200	Weak transcription	GM12878-XiMat	blood
4	chr2:9923000-9927000	Weak transcription	Fetal Kidney	kidney
5	chr2:9923200-9927000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr2:9923200-9927000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr2:9923200-9927000	Weak transcription	Adipose Nuclei	Adipose
8	chr2:9923400-9924400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
9	chr2:9923400-9924400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
10	chr2:9923400-9925600	Weak transcription	Fetal Intestine Large	intestine
11	chr2:9923400-9926000	Weak transcription	Fetal Intestine Small	intestine
12	chr2:9923400-9926200	Weak transcription	Duodenum Mucosa	Duodenum
13	chr2:9923400-9926200	Weak transcription	Placenta	Placenta
14	chr2:9923600-9926800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
15	chr2:9923600-9927000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
16	chr2:9923600-9927000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
17	chr2:9923600-9927200	Weak transcription	Primary T helper cells fromperipheralblood	blood
18	chr2:9923600-9927200	Weak transcription	Fetal Thymus	thymus
19	chr2:9923600-9927400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
20	chr2:9924000-9924400	Weak transcription	Primary T cells from cord blood	blood
21	chr2:9924000-9926200	Weak transcription	Primary T cells fromperipheralblood	blood
22	chr2:9924200-9927000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
23	chr2:9924200-9927000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
24	chr2:9924400-9924600	Enhancers	Primary T cells from cord blood	blood
25	chr2:9924400-9927000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
26	chr2:9924600-9927000	Weak transcription	Primary T cells from cord blood	blood
27	chr2:9924800-9925000	Enhancers	Left Ventricle	heart
28	chr2:9925000-9925200	Weak transcription	Left Ventricle	heart
29	chr2:9925400-9926800	Weak transcription	Monocytes-CD14+_RO01746	blood
30	chr2:9925600-9926600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
31	chr2:9925600-9927600	Enhancers	Fetal Intestine Large	intestine
32	chr2:9926000-9926200	Bivalent Enhancer	HepG2	liver
33	chr2:9926000-9927000	Enhancers	Fetal Intestine Small	intestine
34	chr2:9926200-9926400	Enhancers	Duodenum Mucosa	Duodenum
35	chr2:9926200-9927000	Enhancers	Primary T cells fromperipheralblood	blood
36	chr2:9926200-9927000	Enhancers	Placenta	Placenta
37	chr2:9926800-9927000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
38	chr2:9926800-9927000	Enhancers	Monocytes-CD14+_RO01746	blood
39	chr2:9926800-9927400	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
40	chr2:9926800-9927400	Active TSS	Rectal Mucosa Donor 29	rectum
41	chr2:9926800-9927600	Active TSS	Osteobl	bone
42	chr2:9927000-9927200	Active TSS	iPS-15b Cell Line	embryonic stem cell
43	chr2:9927000-9927200	Enhancers	Primary B cells from peripheral blood	blood
44	chr2:9927000-9927200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
45	chr2:9927000-9927200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
46	chr2:9927000-9927200	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
47	chr2:9927000-9927200	Bivalent/Poised TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
48	chr2:9927000-9927200	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
49	chr2:9927000-9927200	Flanking Active TSS	Fetal Intestine Small	intestine
50	chr2:9927000-9927400	Active TSS	HUES48 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links