Variant report

Variant	nsv873822
Chromosome Location	chr2:34796732-34869662
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:0)
LncRNA
region (count:7)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:7 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-RASGRP3-14	chr2:34800570-34803561	l_1807_chr2:34789043-34803561_liver
2	lnc-RASGRP3-14	chr2:34815892-34816802	NONHSAT070039
3	lnc-FAM98A-7	chr2:34823138-34823205	NONHSAT070038
4	lnc-RASGRP3-14	chr2:34815937-34816109	l_1807_chr2:34789043-34803561_liver
5	lnc-RASGRP3-14	chr2:34800570-34801134	NONHSAT070037
6	lnc-RASGRP3-3	chr2:34860316-34860407	ENSG00000226785
7	lnc-RASGRP3-14	chr2:34811019-34811128	NONHSAT070039

No data

Extended variants
information (count: 330 )
Associated
traits (count: 62 )

Variant overlapped rSNPs/rCNVs (count:330 , 50 per page) page: 1 2 3 4 5 6 7

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs144658180	chr2:34800626-34800627	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
2	rs191012932	chr2:34800627-34800628	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
3	rs550524778	chr2:34800630-34800631	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
4	rs181007632	chr2:34800633-34800634	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
5	rs539245609	chr2:34800651-34800652	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
6	rs199620558	chr2:34800877-34800878	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
7	rs1220229	chr2:34800934-34800935	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
8	rs372865188	chr2:34800967-34800968	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
9	rs566406748	chr2:34800978-34800979	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
10	rs535114066	chr2:34801005-34801006	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
11	rs574674735	chr2:34801007-34801008	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
12	rs200166089	chr2:34801018-34801019	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
13	rs575263179	chr2:34801038-34801039	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
14	rs141110069	chr2:34801100-34801101	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
15	rs554170339	chr2:34801229-34801230	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
16	rs370805067	chr2:34801309-34801310	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
17	rs537897185	chr2:34801469-34801470	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
18	rs557280164	chr2:34801475-34801476	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
19	rs577409923	chr2:34801519-34801520	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
20	rs546419189	chr2:34801553-34801554	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
21	rs374887657	chr2:34801565-34801566	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
22	rs397746972	chr2:34801583-34801584	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
23	rs563981670	chr2:34801612-34801613	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
24	rs560119813	chr2:34801621-34801622	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
25	rs573564826	chr2:34801624-34801625	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
26	rs530828352	chr2:34801648-34801649	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
27	rs148509502	chr2:34801654-34801655	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
28	rs562035537	chr2:34801660-34801661	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
29	rs530912781	chr2:34801670-34801671	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
30	rs55769015	chr2:34801680-34801681	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
31	rs551093487	chr2:34801696-34801697	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
32	rs186120406	chr2:34801698-34801699	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
33	rs533180329	chr2:34801709-34801710	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
34	rs546373861	chr2:34801725-34801726	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
35	rs377549428	chr2:34801731-34801732	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
36	rs190596788	chr2:34801733-34801734	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
37	rs142832415	chr2:34801762-34801763	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
38	rs200066341	chr2:34801773-34801774	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
39	rs371062089	chr2:34801784-34801785	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
40	rs564578059	chr2:34801792-34801793	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
41	rs151111474	chr2:34801805-34801806	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
42	rs568793371	chr2:34801822-34801823	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
43	rs537434702	chr2:34801857-34801858	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
44	rs1220228	chr2:34801863-34801864	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
45	rs183349712	chr2:34801878-34801879	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
46	rs540075874	chr2:34801890-34801891	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
47	rs553569548	chr2:34801895-34801896	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
48	rs573601256	chr2:34801915-34801916	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
49	rs114906631	chr2:34801941-34801942	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
50	rs140195320	chr2:34801989-34801990	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a

Variant related diseases (count:62)

Disease	PMID	Source
Breast cancer	17393978	CNVD
Acute lymphoblastic leukemia	21098271	CNVD
Breast cancer	17603634	CNVD
Medulloblastoma	21979893	CNVD
Lynch syndrome	18415027	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Diffuse large b-cell lymphoma	18287131	CNVD
Ovarian neoplasms	16753589	CNVD
Glioblastoma multiforme	17387387	CNVD
Neuroblastoma	17533364	CNVD
Neuroblastoma	18923191	CNVD
Endometrial cancer	22040021	CNVD
Adrenal tumor	17535989	CNVD
Breast cancer	21264507	CNVD
Basal cell lymphoma	17053054	CNVD
Medulloblastoma	17522785	CNVD
Cancer	23418310	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Ependymoma	16718352	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
lymphocytic leukemia	21291569	CNVD
Prostate cancer	18632612	CNVD
Bladder cancer	21909424	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Intellectual disability	22102821	CNVD
Cancer	20164919	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Autism	22495311	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Follicular lymphoma	20505157	CNVD
Autism	17483303	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
Myofibroblastic sarcoma	19369631	CNVD
Esophageal adenocarcinoma	18519675	CNVD
Medulloblastoma	20607354	CNVD
Leukemia	18628472	CNVD
Autism	19521722	CNVD
Autism	18522746	CNVD
Breast cancer	21364760	CNVD
Wilms tumour	21544195	CNVD
Non-small cell lung cancer	18927303	CNVD
Hereditary gingival fibromatosis	19633868	CNVD
Breast cancer	21785460	CNVD
Lung cancer	18438408	CNVD
Myelofibrosis	22110671	CNVD
Breast cancer	21045282	CNVD
Prostate cancer	21965145	CNVD
Breast cancer	16397240	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Neuroblastoma	21508638	CNVD
Neurodevelopmental disorder	22521361	CNVD
Neurocytoma	17123091	CNVD
Autism	22495309	CNVD
Pancreatic ductal adenocarcinoma	19077451	CNVD
small cell lung cancer	20016488	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD
Non-syndromic sensorineural hearing loss	21293372	CNVD

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:34809400-34810200	Enhancers	Fetal Lung	lung
2	chr2:34829200-34829600	Enhancers	Brain Germinal Matrix	brain
3	chr2:34829400-34829600	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr2:34842200-34842800	Enhancers	Fetal Lung	lung
5	chr2:34860400-34861000	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell

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