Variant report

Variant	nsv874169
Chromosome Location	chr2:56383762-56473480
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1223)
CpG islands
(count:2080)
Chromatin interactive
region (count:19)
LncRNA
region (count:18)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1223 , 50 per page) page: 1 2 3 4 5 6 7 ... 25

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr2:56431664-56432109	HepG2	liver:	n/a	n/a
2	ATF3	chr2:56410617-56410948	A549	lung:	n/a	n/a
3	BACH1	chr2:56410838-56411083	H1-hESC	embryonic stem cell:	n/a	n/a
4	BACH1	chr2:56422899-56422975	H1-hESC	embryonic stem cell:	n/a	n/a
5	BCL11A	chr2:56409640-56409806	H1-hESC	embryonic stem cell:	n/a	n/a
6	BHLHE40	chr2:56410676-56411058	K562	blood:	n/a	chr2:56410938-56410954
7	BHLHE40	chr2:56418881-56419050	K562	blood:	n/a	n/a
8	BHLHE40	chr2:56424945-56425329	GM12878	blood:	n/a	n/a
9	BHLHE40	chr2:56410720-56411023	GM12878	blood:	n/a	chr2:56410938-56410954
10	BHLHE40	chr2:56426174-56426613	GM12878	blood:	n/a	n/a
11	BRCA1	chr2:56410869-56411032	HepG2	liver:	n/a	n/a
12	BRCA1	chr2:56457381-56457608	Hela-S3	cervix:	n/a	n/a
13	BRCA1	chr2:56418921-56419060	HepG2	liver:	n/a	n/a
14	BRCA1	chr2:56418783-56419000	H1-hESC	embryonic stem cell:	n/a	n/a
15	BRCA1	chr2:56410728-56411043	Hela-S3	cervix:	n/a	n/a
16	CBX3	chr2:56410715-56411041	K562	blood:	n/a	n/a
17	CCNT2	chr2:56410720-56412079	K562	blood:	n/a	chr2:56410970-56410979
18	CEBPB	chr2:56397780-56397980	K562	blood:	n/a	chr2:56397866-56397877
19	CEBPB	chr2:56397707-56398041	Hela-S3	cervix:	n/a	chr2:56397866-56397877
20	CEBPB	chr2:56431646-56432149	HepG2	liver:	n/a	n/a
21	CEBPB	chr2:56457185-56457759	HCT-116	colon:	n/a	chr2:56457235-56457246 chr2:56457333-56457346 chr2:56457335-56457346
22	CEBPB	chr2:56431807-56432024	HepG2	liver:	n/a	n/a
23	CEBPB	chr2:56457272-56457434	A549	lung:	n/a	chr2:56457333-56457346 chr2:56457335-56457346
24	CEBPB	chr2:56397732-56398049	A549	lung:	n/a	chr2:56397866-56397877
25	CEBPB	chr2:56457088-56457680	Hela-S3	cervix:	n/a	chr2:56457235-56457246 chr2:56457333-56457346 chr2:56457335-56457346
26	CEBPB	chr2:56437443-56437650	HepG2	liver:	n/a	n/a
27	CEBPB	chr2:56394354-56394554	K562	blood:	n/a	chr2:56394438-56394449
28	CEBPB	chr2:56454989-56455254	HepG2	liver:	n/a	chr2:56455023-56455036 chr2:56455122-56455133
29	CEBPB	chr2:56431674-56432143	HepG2	liver:	n/a	n/a
30	CEBPB	chr2:56394287-56394592	A549	lung:	n/a	chr2:56394438-56394449
31	CEBPB	chr2:56397738-56398002	K562	blood:	n/a	chr2:56397866-56397877
32	CEBPB	chr2:56397601-56398043	HepG2	liver:	n/a	chr2:56397866-56397877
33	CEBPB	chr2:56394301-56394598	HepG2	liver:	n/a	chr2:56394438-56394449
34	CHD1	chr2:56411367-56411420	H1-hESC	embryonic stem cell:	n/a	n/a
35	CHD2	chr2:56431754-56431988	HepG2	liver:	n/a	n/a
36	CHD2	chr2:56410725-56411442	H1-hESC	embryonic stem cell:	n/a	n/a
37	CHD2	chr2:56418834-56419059	H1-hESC	embryonic stem cell:	n/a	n/a
38	CHD2	chr2:56410830-56411091	K562	blood:	n/a	n/a
39	CHD2	chr2:56410742-56411046	Hela-S3	cervix:	n/a	n/a
40	CHD2	chr2:56425005-56425288	GM12878	blood:	n/a	n/a
41	CREB1	chr2:56410689-56411053	A549	lung:	n/a	n/a
42	CTBP2	chr2:56410673-56413313	H1-hESC	embryonic stem cell:	n/a	n/a
43	CTCF	chr2:56410740-56410890	MCF-7	breast:	n/a	n/a
44	CTCF	chr2:56410780-56410930	Caco-2	colon:	n/a	n/a
45	CTCF	chr2:56437492-56437562	GM20000	blood:	n/a	n/a
46	CTCF	chr2:56411290-56411293	MCF-7	breast:	n/a	n/a
47	CTCF	chr2:56444314-56444514	K562	blood:	n/a	chr2:56444422-56444440 chr2:56444428-56444437
48	CTCF	chr2:56418860-56419010	GM06990	blood:	n/a	chr2:56418934-56418955 chr2:56418937-56418945
49	CTCF	chr2:56410733-56410978	GM20000	blood:	n/a	n/a
50	CTCF	chr2:56410724-56411000	GM13977	blood:	n/a	n/a

(count:2080 , 50 per page) page: 1 2 3 4 5 6 7 ... 42

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr2:56410676-56410726	GM06990	blood:	n/a
2	chr2:56411072-56411122	HCPEpiC	choroid plexus:	n/a
3	chr2:56411447-56411497	K562	blood:	n/a
4	chr2:56412077-56412127	U87	brain:	n/a
5	chr2:56410071-56410121	GM19239	blood:	n/a
6	chr2:56410382-56410432	NHDF-neo	bronchial:	n/a
7	chr2:56410676-56410726	GM06990	blood:	n/a
8	chr2:56411072-56411122	HCPEpiC	choroid plexus:	n/a
9	chr2:56411447-56411497	K562	blood:	n/a
10	chr2:56412077-56412127	U87	brain:	n/a
11	chr2:56410071-56410121	GM19239	blood:	n/a
12	chr2:56410382-56410432	NHDF-neo	bronchial:	n/a
13	chr2:56413034-56413084	RPTEC	kidney:	n/a
14	chr2:56410509-56410559	IMR90	lung:	fetal
15	chr2:56409774-56409824	NT2-D1	testis:	n/a
16	chr2:56411072-56411122	T-47D	breast:	n/a
17	chr2:56410509-56410559	HUVEC	blood vessel:	n/a
18	chr2:56413253-56413303	PrEC	prostate:	n/a
19	chr2:56410509-56410559	HAEpiC	amniotic membrane:	n/a
20	chr2:56411447-56411497	AG09309	skin:	n/a
21	chr2:56412924-56412974	AG04450	lung:	fetal
22	chr2:56413069-56413119	Hela-S3	cervix:	n/a
23	chr2:56420171-56420221	HEK293	kidney:	embryo
24	chr2:56420171-56420221	Hela-S3	cervix:	n/a
25	chr2:56411534-56411584	HEEpiC	esophagus:	n/a
26	chr2:56412597-56412647	HepG2	liver:	n/a
27	chr2:56413034-56413084	GM12892	blood:	n/a
28	chr2:56410382-56410432	SK-N-SH_RA	brain:	n/a
29	chr2:56461845-56461895	ovcar-3	ovarian:	n/a
30	chr2:56413034-56413084	HRCEpiC	kidney:	n/a
31	chr2:56411583-56411633	MCF10A-Er-Src	breast:	n/a
32	chr2:56410509-56410559	MCF10A-Er-Src	breast:	n/a
33	chr2:56409774-56409824	HEK293	kidney:	embryo
34	chr2:56410780-56410830	HEEpiC	esophagus:	n/a
35	chr2:56413034-56413084	GM12878	blood:	n/a
36	chr2:56411208-56411258	ProgFib	skin:	n/a
37	chr2:56413137-56413187	HAEpiC	amniotic membrane:	n/a
38	chr2:56413253-56413303	HNPCEpiC	eye:	n/a
39	chr2:56413137-56413187	HCPEpiC	choroid plexus:	n/a
40	chr2:56412597-56412647	SK-N-SH_RA	brain:	n/a
41	chr2:56420171-56420221	GM12878	blood:	n/a
42	chr2:56411534-56411584	Hepatocyte	liver:	n/a
43	chr2:56412380-56412430	ProgFib	skin:	n/a
44	chr2:56409774-56409824	Hela-S3	cervix:	n/a
45	chr2:56412380-56412430	HNPCEpiC	eye:	n/a
46	chr2:56411072-56411122	MCF10A-Er-Src	breast:	n/a
47	chr2:56410071-56410121	HAEpiC	amniotic membrane:	n/a
48	chr2:56410288-56410338	HPAEpiC	pulmonary alveolar:	n/a
49	chr2:56409774-56409824	HAEpiC	amniotic membrane:	n/a
50	chr2:56410833-56410883	HRE	kidney:	n/a

(count:19 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr2:55977456..55979325-chr2:56414162..56415751,2	K562	blood:
2	chr2:56410583..56414683-chr2:56417427..56420502,4	MCF-7	breast:
3	chr2:56456139..56458402-chr2:56461204..56463383,2	K562	blood:
4	chr2:56455869..56458402-chr2:56460925..56463383,2	K562	blood:
5	chr2:56387289..56389369-chr2:56393881..56395588,2	K562	blood:
6	chr2:56375448..56377112-chr2:56391906..56393998,2	K562	blood:
7	chr2:56395307..56398284-chr2:56402876..56406233,3	MCF-7	breast:
8	chr2:56373950..56376355-chr2:56383200..56384909,2	MCF-7	breast:
9	chr2:56409645..56414255-chr2:56417115..56420313,5	MCF-7	breast:
10	chr2:56396246..56398806-chr2:56410372..56412063,2	MCF-7	breast:
11	chr2:56464641..56466230-chr2:56471449..56473593,2	K562	blood:
12	chr2:56422236..56424265-chr2:56426815..56429509,2	MCF-7	breast:
13	chr2:56438471..56441225-chr2:57051813..57054565,2	MCF-7	breast:
14	chr2:56395307..56398284-chr2:56402876..56406233,3	MCF-7	breast:
15	chr2:56422236..56424265-chr2:56426815..56429509,2	MCF-7	breast:
16	chr2:56464641..56466230-chr2:56471449..56473593,2	K562	blood:
17	chr2:56387289..56389369-chr2:56393881..56395588,2	K562	blood:
18	chr16:75033537..75035200-chr2:56403126..56405221,2	MCF-7	breast:
19	chr2:56418873..56419603-chr2:56975911..56976760,2	MCF-7	breast:

(count:18 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-EFEMP1-3	chr2:56403639-56403832	NONHSAT070824
2	lnc-EFEMP1-3	chr2:56410502-56410809	NONHSAT070825
3	lnc-EFEMP1-3	chr2:56411759-56412043	ENSG00000233251.3
4	lnc-EFEMP1-3	chr2:56404698-56404870	NONHSAT070821
5	lnc-CCDC85A-2	chr2:56404360-56404499	ENSG00000272180.1
6	lnc-EFEMP1-3	chr2:56404698-56404870	NONHSAT070824
7	lnc-EFEMP1-3	chr2:56404698-56404870	ENSG00000233251.3
8	lnc-EFEMP1-3	chr2:56400669-56403285	ENSG00000233251.3
9	lnc-CCDC85A-2	chr2:56408262-56408787	ENSG00000272180.1
10	lnc-EFEMP1-3	chr2:56404698-56404870	ENSG00000233251
11	lnc-EFEMP1-3	chr2:56400669-56403285	NONHSAT070821
12	lnc-CCDC85A-2	chr2:56407181-56407324	ENSG00000272180.1
13	lnc-EFEMP1-3	chr2:56412833-56412905	NONHSAT070821
14	lnc-EFEMP1-3	chr2:56401875-56403285	ENSG00000233251
15	lnc-EFEMP1-3	chr2:56406738-56406895	NONHSAT070824
16	lnc-EFEMP1-3	chr2:56412833-56412905	ENSG00000233251
17	lnc-EFEMP1-3	chr2:56407134-56407297	NONHSAT070825
18	lnc-CCDC85A-2	chr2:56397136-56397330	ENSG00000272180.1

No data

Variant related genes	Relation type
RNA5SP93	TF binding region
CCDC85A	TF binding region
ENSG00000233251	TF binding region
RNA5SP93	CpG island
CCDC85A	CpG island
ENSG00000233251	CpG island
ENSG00000186187	chromatin interactions
ENSG00000055813	chromatin interactions
ENSG00000271894	chromatin interactions
ENSG00000233251	chromatin interactions
ENSG00000103091	chromatin interactions
ENSG00000199395	chromatin interactions
SUV39H1	miRNA target sites
GNG5	miRNA target sites
YIPF1	miRNA target sites

Extended variants
information (count: 3716 )
Associated
traits (count: 82 )

Variant overlapped rSNPs/rCNVs (count:3716 , 50 per page) page: 1 2 3 4 5 6 7 ... 75

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs6545554	chr2:56383762-56383763	Weak transcription	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
2	rs549629363	chr2:56383798-56383799	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
3	rs575575252	chr2:56383838-56383839	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
4	rs569420454	chr2:56383851-56383852	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
5	rs112322015	chr2:56383853-56383854	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
6	rs555610933	chr2:56383854-56383855	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
7	rs554263970	chr2:56383859-56383860	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
8	rs557831827	chr2:56383909-56383910	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
9	rs142673122	chr2:56383943-56383944	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
10	rs367676958	chr2:56383993-56383994	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
11	rs150916610	chr2:56384005-56384006	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
12	rs545914926	chr2:56384014-56384015	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
13	rs553665537	chr2:56384026-56384027	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
14	rs557822906	chr2:56384071-56384072	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
15	rs192717027	chr2:56384080-56384081	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
16	rs147013043	chr2:56384115-56384116	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
17	rs562575511	chr2:56384135-56384136	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
18	rs113186792	chr2:56384136-56384137	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
19	rs544424852	chr2:56384141-56384142	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
20	rs183456292	chr2:56384145-56384146	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
21	rs564556090	chr2:56384150-56384151	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
22	rs71983506	chr2:56384205-56384206	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
23	rs377627426	chr2:56384209-56384210	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
24	rs533371173	chr2:56384242-56384243	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
25	rs370177359	chr2:56384277-56384278	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
26	rs556538339	chr2:56384304-56384305	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
27	rs188335896	chr2:56384308-56384309	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
28	rs573050050	chr2:56384380-56384381	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
29	rs577111165	chr2:56384442-56384443	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
30	rs373884029	chr2:56384447-56384448	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
31	rs111929926	chr2:56384455-56384456	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
32	rs538389233	chr2:56384496-56384497	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
33	rs551198101	chr2:56384533-56384534	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
34	rs193187251	chr2:56384589-56384590	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
35	rs184622685	chr2:56384608-56384609	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
36	rs189407534	chr2:56384647-56384648	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
37	rs191136856	chr2:56384657-56384658	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
38	rs376422077	chr2:56384658-56384659	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
39	rs553186177	chr2:56384667-56384668	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
40	rs138176080	chr2:56384689-56384690	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
41	rs563032215	chr2:56384703-56384704	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
42	rs531700228	chr2:56384795-56384796	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
43	rs183639806	chr2:56384800-56384801	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
44	rs572976853	chr2:56384822-56384823	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
45	rs556417351	chr2:56384915-56384916	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs368077169	chr2:56384942-56384943	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs3910177	chr2:56384951-56384952	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
48	rs545145848	chr2:56384990-56384991	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs189659950	chr2:56385132-56385133	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs12612799	chr2:56385145-56385146	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a

Variant related diseases (count:82)

Disease	PMID	Source
Medulloblastoma	21979893	CNVD
Lynch syndrome	18415027	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Diffuse large b-cell lymphoma	18287131	CNVD
Ovarian neoplasms	16753589	CNVD
Glioblastoma multiforme	17387387	CNVD
Neuroblastoma	17533364	CNVD
Neuroblastoma	18923191	CNVD
Endometrial cancer	22040021	CNVD
Adrenal tumor	17535989	CNVD
Breast cancer	21264507	CNVD
Basal cell lymphoma	17053054	CNVD
Medulloblastoma	17522785	CNVD
Cancer	23418310	CNVD
Breast cancer	17603634	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Ependymoma	16718352	CNVD
lymphocytic leukemia	21291569	CNVD
Prostate cancer	18632612	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Intellectual disability	22102821	CNVD
Cancer	20164919	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Follicular lymphoma	20505157	CNVD
Autism	17483303	CNVD
Myofibroblastic sarcoma	19369631	CNVD
Esophageal adenocarcinoma	18519675	CNVD
Medulloblastoma	20607354	CNVD
Leukemia	18628472	CNVD
Autism	22495311	CNVD
Autism	18522746	CNVD
Breast cancer	21785460	CNVD
Lung cancer	18438408	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Neuroblastoma	21508638	CNVD
Neurodevelopmental disorder	22521361	CNVD
Melanoma	18172304	CNVD
Cancer	16751803	CNVD
Colorectal cancer	16272173	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Williams Syndrome	20824207	CNVD
Breast cancer	16272173	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Ovarian cancer	21720365	CNVD
abnormal development	18461090	CNVD
Retinoblastoma	22278416	CNVD
Cancer	21183584	CNVD
Breast cancer	16397240	CNVD
Chronic lymphocytic leukemia	17053054	CNVD
Hereditary non-polyposis colorectal cancer	19566914	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Acute lymphoblastic leukemia	21980252	CNVD
small cell lung cancer	20016488	CNVD
Developmental delay	21147756	CNVD
Mental retardation	19951919	CNVD
Myelofibrosis	22110671	CNVD
Microcephaly	20799320	CNVD
camptodactyly	20799320	CNVD
cognitive delay	20799320	CNVD
prenatal and postnatal growth deficiency	20799320	CNVD
ptosis of eyelids	20799320	CNVD
Maculopathy	20981449	CNVD
2p16.1 microdeletion syndrome	22283845	CNVD
Autism	22579565	CNVD
Autism	16963482	CNVD
Autism	21750575	CNVD
idiopathic intellectual disability	16963482	CNVD
Carcinoma ex pleomorphic adenoma	18828159	CNVD
Multiple myeloma	16616336	CNVD
Follicular lymphoma	17699855	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Pancreatic ductal adenocarcinoma	19077451	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
Breast cancer	22522925	CNVD
Non-syndromic sensorineural hearing loss	15273396	CNVD
Seminomas	18059402	CNVD
Testicular germ cell tumor	18059402	CNVD

Chromatin state (count:745 , 50 per page) page: 1 2 3 4 5 6 7 ... 15

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:56378800-56386800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr2:56378800-56403000	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr2:56386800-56387400	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
4	chr2:56387400-56397400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr2:56394000-56395400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr2:56394400-56395000	Bivalent Enhancer	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr2:56394400-56395200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr2:56394400-56396200	Enhancers	Adipose Nuclei	Adipose
9	chr2:56394400-56397400	Enhancers	HSMMtube	muscle
10	chr2:56394600-56396000	Enhancers	Muscle Satellite Cultured Cells	--
11	chr2:56394800-56396200	Enhancers	HSMM	muscle
12	chr2:56395000-56395400	Enhancers	Hela-S3	cervix
13	chr2:56395000-56395800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr2:56395000-56396400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr2:56395000-56400400	Weak transcription	H1 Cell Line	embryonic stem cell
16	chr2:56395200-56395800	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr2:56395200-56396000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr2:56395400-56396000	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr2:56395600-56396200	Enhancers	Pancreatic Islets	Pancreatic Islet
20	chr2:56395800-56396000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr2:56395800-56396800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr2:56396000-56396200	Enhancers	Psoas Muscle	Psoas
23	chr2:56396000-56397000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr2:56396000-56397400	Weak transcription	Muscle Satellite Cultured Cells	--
25	chr2:56396000-56398000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr2:56396200-56397800	Weak transcription	Adipose Nuclei	Adipose
27	chr2:56396400-56397600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr2:56396800-56397200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr2:56397000-56397600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
30	chr2:56397200-56398800	Enhancers	Placenta	Placenta
31	chr2:56397400-56399600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
32	chr2:56397600-56397800	Enhancers	Muscle Satellite Cultured Cells	--
33	chr2:56397600-56398800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr2:56397800-56398400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
35	chr2:56397800-56398800	Enhancers	Adipose Nuclei	Adipose
36	chr2:56398000-56398200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
37	chr2:56398000-56398600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
38	chr2:56398600-56399000	Bivalent Enhancer	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
39	chr2:56398800-56406000	Weak transcription	Adipose Nuclei	Adipose
40	chr2:56398800-56409200	Weak transcription	Placenta	Placenta
41	chr2:56399600-56404400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
42	chr2:56400400-56410200	Weak transcription	HUVEC	blood vessel
43	chr2:56401000-56410600	Weak transcription	Left Ventricle	heart
44	chr2:56402400-56403400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
45	chr2:56403000-56403400	Enhancers	H9 Cell Line	embryonic stem cell
46	chr2:56404600-56404800	Enhancers	GM12878-XiMat	blood
47	chr2:56404800-56405200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
48	chr2:56405000-56405200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
49	chr2:56405200-56410200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
50	chr2:56409000-56409400	Enhancers	Fetal Heart	heart

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