Variant report

Variant	nsv876294
Chromosome Location	chr3:404658-465476
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr3:455772-456068	HepG2	liver:	n/a	chr3:455850-455866
2	ARID3A	chr3:418748-419094	HepG2	liver:	n/a	n/a
3	BATF	chr3:462357-462600	GM12878	blood:	n/a	chr3:462485-462494
4	BATF	chr3:462277-462661	GM12878	blood:	n/a	chr3:462485-462494
5	BHLHE40	chr3:462348-462658	GM12878	blood:	n/a	n/a
6	BRCA1	chr3:463605-463647	Hela-S3	cervix:	n/a	n/a
7	CEBPB	chr3:406067-406268	H1-hESC	embryonic stem cell:	n/a	chr3:406169-406180 chr3:406169-406182 chr3:406171-406182
8	CEBPB	chr3:438022-438326	H1-hESC	embryonic stem cell:	n/a	chr3:438182-438195 chr3:438184-438193
9	CEBPB	chr3:438003-438367	A549	lung:	n/a	chr3:438182-438195 chr3:438184-438193
10	CEBPB	chr3:426560-426615	A549	lung:	n/a	chr3:426568-426579 chr3:426568-426577
11	CEBPB	chr3:459160-459210	K562	blood:	n/a	chr3:459185-459196
12	CEBPB	chr3:450769-450941	H1-hESC	embryonic stem cell:	n/a	n/a
13	CEBPB	chr3:450750-451019	A549	lung:	n/a	n/a
14	CEBPB	chr3:452335-452549	HepG2	liver:	n/a	chr3:452447-452458
15	CEBPB	chr3:438001-438370	HepG2	liver:	n/a	chr3:438182-438195 chr3:438184-438193
16	CEBPB	chr3:438012-438371	IMR90	lung:	n/a	chr3:438182-438195 chr3:438184-438193
17	CEBPB	chr3:450741-451052	HepG2	liver:	n/a	n/a
18	CEBPB	chr3:450708-451032	IMR90	lung:	n/a	n/a
19	CEBPB	chr3:437995-438379	Hela-S3	cervix:	n/a	chr3:438182-438195 chr3:438184-438193
20	CEBPB	chr3:438085-438248	K562	blood:	n/a	chr3:438182-438195 chr3:438184-438193
21	CEBPB	chr3:458278-458461	A549	lung:	n/a	chr3:458369-458380 chr3:458369-458380 chr3:458369-458382 chr3:458369-458382
22	CEBPB	chr3:452366-452605	IMR90	lung:	n/a	chr3:452447-452458
23	CEBPB	chr3:406009-406340	HepG2	liver:	n/a	chr3:406169-406180 chr3:406169-406182 chr3:406171-406182
24	CTCF	chr3:455860-456010	GM12864	blood:	n/a	chr3:455932-455953 chr3:455930-455948 chr3:455935-455943
25	CTCF	chr3:418792-419111	K562	blood:	n/a	chr3:418930-418948 chr3:418925-418946
26	CTCF	chr3:455900-456050	HCM	heart:	n/a	chr3:455932-455953 chr3:455930-455948 chr3:455935-455943
27	CTCF	chr3:455851-456063	HUVEC	blood vessel:	n/a	chr3:455932-455953 chr3:455930-455948 chr3:455935-455943
28	CTCF	chr3:455820-455970	HMEC	breast:	n/a	chr3:455932-455953 chr3:455930-455948 chr3:455935-455943
29	CTCF	chr3:418940-419090	HAc	cerebellar:	n/a	n/a
30	CTCF	chr3:455900-456050	GM12874	blood:	n/a	chr3:455932-455953 chr3:455930-455948 chr3:455935-455943
31	CTCF	chr3:418840-418990	GM06990	blood:	n/a	chr3:418930-418948 chr3:418925-418946
32	CTCF	chr3:455840-455990	GM12872	blood:	n/a	chr3:455932-455953 chr3:455930-455948 chr3:455935-455943
33	CTCF	chr3:418900-419050	SAEC	small airway:	n/a	chr3:418930-418948 chr3:418925-418946
34	CTCF	chr3:418780-418930	GM12870	blood:	n/a	n/a
35	CTCF	chr3:455960-456110	HVMF	connective:	n/a	n/a
36	CTCF	chr3:418860-419010	HPAF	blood vessel:	n/a	chr3:418930-418948 chr3:418925-418946
37	CTCF	chr3:418860-419010	GM06990	blood:	n/a	chr3:418930-418948 chr3:418925-418946
38	CTCF	chr3:418860-419010	AG09319	gingival:	n/a	chr3:418930-418948 chr3:418925-418946
39	CTCF	chr3:418880-419030	HepG2	liver:	n/a	chr3:418930-418948 chr3:418925-418946
40	CTCF	chr3:418860-419010	GM12864	blood:	n/a	chr3:418930-418948 chr3:418925-418946
41	CTCF	chr3:418900-419050	HPAF	blood vessel:	n/a	chr3:418930-418948 chr3:418925-418946
42	CTCF	chr3:418840-418990	GM12864	blood:	n/a	chr3:418930-418948 chr3:418925-418946
43	CTCF	chr3:455873-456024	LNCaP	prostate:	n/a	chr3:455932-455953 chr3:455930-455948 chr3:455935-455943
44	CTCF	chr3:418820-418970	GM12864	blood:	n/a	chr3:418930-418948 chr3:418925-418946
45	CTCF	chr3:455869-456062	K562	blood:	n/a	chr3:455932-455953 chr3:455930-455948 chr3:455935-455943
46	CTCF	chr3:418880-419030	HEK293	kidney:	n/a	chr3:418930-418948 chr3:418925-418946
47	CTCF	chr3:418830-419044	H1-hESC	embryonic stem cell:	n/a	chr3:418930-418948 chr3:418925-418946
48	CTCF	chr3:418860-419010	SK-N-SH_RA	brain:	n/a	chr3:418930-418948 chr3:418925-418946
49	CTCF	chr3:455840-455990	HCPEpiC	choroid plexus:	n/a	chr3:455932-455953 chr3:455930-455948 chr3:455935-455943
50	CTCF	chr3:418820-418970	Hela-S3	cervix:	n/a	chr3:418930-418948 chr3:418925-418946

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr3:427558-427608	PrEC	prostate:	n/a
2	chr3:427757-427807	BJ	skin:	n/a
3	chr3:427558-427608	HPAEpiC	pulmonary alveolar:	n/a
4	chr3:427558-427608	CMK	blood:	n/a
5	chr3:427757-427807	GM12892	blood:	n/a
6	chr3:427757-427807	MCF10A-Er-Src	breast:	n/a
7	chr3:427558-427608	MCF-7	breast:	n/a
8	chr3:427558-427608	HNPCEpiC	eye:	n/a
9	chr3:427757-427807	T-47D	breast:	n/a
10	chr3:427558-427608	HCT-116	colon:	n/a
11	chr3:447414-447464	ProgFib	skin:	n/a
12	chr3:427757-427807	HCF	heart:	n/a
13	chr3:427558-427608	HL-60	blood:	n/a
14	chr3:427757-427807	MCF-7	breast:	n/a
15	chr3:447414-447464	Hela-S3	cervix:	n/a
16	chr3:427757-427807	AoSMC	blood vessel:	n/a
17	chr3:427558-427608	RPTEC	kidney:	n/a
18	chr3:427558-427608	GM12891	blood:	n/a
19	chr3:427757-427807	PrEC	prostate:	n/a
20	chr3:447414-447464	HNPCEpiC	eye:	n/a
21	chr3:427558-427608	Hela-S3	cervix:	n/a
22	chr3:447414-447464	IMR90	lung:	fetal
23	chr3:427757-427807	HCT-116	colon:	n/a
24	chr3:447414-447464	HCM	heart:	n/a
25	chr3:447414-447464	AG09319	gingival:	n/a
26	chr3:447414-447464	SAEC	small airway:	n/a
27	chr3:427558-427608	NHBE	bronchial:	n/a
28	chr3:447414-447464	GM12892	blood:	n/a
29	chr3:447414-447464	HCF	heart:	n/a
30	chr3:427558-427608	Jurkat	blood:	n/a
31	chr3:427757-427807	HUVEC	blood vessel:	n/a
32	chr3:427757-427807	HRCEpiC	kidney:	n/a
33	chr3:447414-447464	PANC-1	pancreas:	n/a
34	chr3:447414-447464	AoSMC	blood vessel:	n/a
35	chr3:447414-447464	LNCaP	prostate:	n/a
36	chr3:427757-427807	SK-N-MC	brain:	n/a
37	chr3:427558-427608	T-47D	breast:	n/a
38	chr3:427757-427807	HRE	kidney:	n/a
39	chr3:427757-427807	GM19239	blood:	n/a
40	chr3:447414-447464	Caco-2	colon:	n/a
41	chr3:427558-427608	MCF10A-Er-Src	breast:	n/a
42	chr3:447414-447464	U87	brain:	n/a
43	chr3:447414-447464	HL-60	blood:	n/a
44	chr3:427558-427608	ECC-1	luminal epithelium:	n/a
45	chr3:427558-427608	NT2-D1	testis:	n/a
46	chr3:427757-427807	BE2_C	brain:	n/a
47	chr3:427558-427608	SKMC	muscle:	n/a
48	chr3:427558-427608	ovcar-3	ovarian:	n/a
49	chr3:427558-427608	SK-N-SH	brain:	n/a
50	chr3:447414-447464	NT2-D1	testis:	n/a

No.	Distal block	Cell Line	Cell type
1	chr3:457571..459756-chr3:462210..465015,2	K562	blood:
2	chr3:426526..428688-chr3:432686..435480,2	K562	blood:
3	chr3:457571..459756-chr3:462210..465015,2	K562	blood:
4	chr3:323232..326179-chr3:404720..407065,2	K562	blood:
5	chr3:453296..456199-chr3:456966..458950,2	K562	blood:
6	chr3:84682..85249-chr3:418773..419384,2	MCF-7	breast:
7	chr3:455533..456082-chr3:893341..894026,2	MCF-7	breast:
8	chr3:395767..396427-chr3:418920..419430,2	MCF-7	breast:
9	chr3:453296..456199-chr3:456966..458950,2	K562	blood:
10	chr3:423895..425881-chr3:427804..430449,2	K562	blood:
11	chr3:423895..425881-chr3:427804..430449,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-IL5RA-5	chr3:405053-405706	ENSG00000234661.1
2	lnc-IL5RA-5	chr3:415500-415735	ENSG00000234661.2
3	lnc-IL5RA-5	chr3:405518-405706	ENSG00000234661.2
4	lnc-IL5RA-5	chr3:427386-427478	ENSG00000234661.1
5	lnc-IL5RA-5	chr3:424250-424415	ENSG00000234661.1

No.	miRNA target gene	miRNA name	Chromosome Location
1	CHL1	hsa-miR-10a-5p	chr3:450171-450192
2	CHL1	hsa-miR-181a-5p	chr3:448562-448584
3	CHL1	hsa-miR-10a-5p	chr3:450185-450191

Variant related genes	Relation type
CHL1-AS1	TF binding region
CHL1	TF binding region
CHL1-AS1	CpG island
CHL1	CpG island
ENSG00000252017	chromatin interactions
ENSG00000234661	chromatin interactions

Extended variants
information (count: 2693 )
Associated
traits (count: 84 )

Variant overlapped rSNPs/rCNVs (count:2693 , 50 per page) page: 1 2 3 4 5 6 7 ... 54

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs2293675	chr3:404658-404659	Weak transcription Strong transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
2	rs144176623	chr3:404668-404669	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs547174566	chr3:404670-404671	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs146549039	chr3:404675-404676	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs559818950	chr3:404676-404677	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs73814716	chr3:404687-404688	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs7646853	chr3:404726-404727	Weak transcription Strong transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
8	rs182485325	chr3:404735-404736	Weak transcription Strong transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
9	rs4684390	chr3:404771-404772	Weak transcription Strong transcription Enhancers	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
10	rs570720013	chr3:404777-404778	Weak transcription Strong transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
11	rs140374650	chr3:404786-404787	Weak transcription Strong transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
12	rs188002402	chr3:404795-404796	Weak transcription Strong transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
13	rs567745501	chr3:404798-404799	Weak transcription Strong transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
14	rs535102800	chr3:404826-404827	Weak transcription Strong transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
15	rs193059197	chr3:404846-404847	Weak transcription Strong transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
16	rs370842441	chr3:404848-404849	Weak transcription Strong transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
17	rs568867706	chr3:404857-404858	Weak transcription Strong transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
18	rs201018775	chr3:404882-404883	Weak transcription Strong transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
19	rs145584881	chr3:404883-404884	Weak transcription Strong transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
20	rs201287572	chr3:404893-404894	Weak transcription Strong transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
21	rs146218538	chr3:404921-404922	Weak transcription Strong transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
22	rs369118058	chr3:404927-404928	Weak transcription Strong transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
23	rs141644867	chr3:404937-404938	Weak transcription Strong transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
24	rs185238679	chr3:404938-404939	Weak transcription Strong transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
25	rs139658545	chr3:404941-404942	Weak transcription Strong transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
26	rs372545878	chr3:404942-404943	Weak transcription Strong transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
27	rs144989135	chr3:404944-404945	Weak transcription Strong transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
28	rs147811720	chr3:404982-404983	Weak transcription Strong transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
29	rs145772223	chr3:404984-404985	Weak transcription Strong transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
30	rs143674187	chr3:404985-404986	Weak transcription Strong transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
31	rs375022202	chr3:404999-405000	Weak transcription Strong transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
32	rs575694438	chr3:405030-405031	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
33	rs200526741	chr3:405040-405041	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
34	rs372485351	chr3:405083-405084	Weak transcription	Chromatin interactive region lncRNA	1 gene(s)	Overlapped CNVs	n/a
35	rs370444508	chr3:405100-405101	Weak transcription	Chromatin interactive region lncRNA	1 gene(s)	Overlapped CNVs	n/a
36	rs373254077	chr3:405105-405106	Weak transcription	Chromatin interactive region lncRNA	1 gene(s)	Overlapped CNVs	n/a
37	rs76869578	chr3:405146-405147	Weak transcription	Chromatin interactive region lncRNA	1 gene(s)	Overlapped CNVs	n/a
38	rs546461649	chr3:405171-405172	Weak transcription	Chromatin interactive region lncRNA	1 gene(s)	Overlapped CNVs	n/a
39	rs149094433	chr3:405183-405184	Weak transcription	Chromatin interactive region lncRNA	1 gene(s)	Overlapped CNVs	n/a
40	rs2387180	chr3:405202-405203	Weak transcription	Chromatin interactive region lncRNA	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
41	rs116040750	chr3:405243-405244	Weak transcription	Chromatin interactive region lncRNA	1 gene(s)	Overlapped CNVs	n/a
42	rs568925441	chr3:405267-405268	Weak transcription	Chromatin interactive region lncRNA	1 gene(s)	Overlapped CNVs	n/a
43	rs73814718	chr3:405276-405277	Weak transcription	Chromatin interactive region lncRNA	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
44	rs185107631	chr3:405277-405278	Weak transcription	Chromatin interactive region lncRNA	1 gene(s)	Overlapped CNVs	n/a
45	rs3852042	chr3:405295-405296	Weak transcription	Chromatin interactive region lncRNA	1 gene(s)	Overlapped CNVs	n/a
46	rs75427609	chr3:405302-405303	Weak transcription	Chromatin interactive region lncRNA	1 gene(s)	Overlapped CNVs	n/a
47	rs143073795	chr3:405314-405315	Weak transcription	Chromatin interactive region lncRNA	1 gene(s)	Overlapped CNVs	n/a
48	rs553666242	chr3:405318-405319	Weak transcription	Chromatin interactive region lncRNA	1 gene(s)	Overlapped CNVs	n/a
49	rs78344175	chr3:405333-405334	Weak transcription	Chromatin interactive region lncRNA	1 gene(s)	Overlapped CNVs	n/a
50	rs535849022	chr3:405363-405364	Weak transcription	Chromatin interactive region lncRNA	1 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:84)

Disease	PMID	Source
Cancer	20164920	CNVD
Lung cancer	16618734	CNVD
Autism	18349135	CNVD
Breast cancer	20409316	CNVD
Myelofibrosis	22110671	CNVD
Autism	22241247	CNVD
Intellectual disability	22045946	CNVD
Squamous cell cancer	19607727	CNVD
Gastric adenocarcinoma	19115996	CNVD
sporadic birth defects	19047251	CNVD
Mental retardation	17124404	CNVD
abnormal development	18461090	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Sudden cardiac death	19188705	CNVD
Myeloproliferative neoplasm	20015882	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Ovarian cancer	21720365	CNVD
Neuroblastoma	18923191	CNVD
Papillary thyroid carcinoma	21436994	CNVD
Biliary cancer	19435499	CNVD
Medulloblastoma	21979893	CNVD
Esophageal squamous carcinoma	18405350	CNVD
Breast cancer	17603634	CNVD
Neuroblastoma	17327916	CNVD
Glioblastoma multiforme	21080181	CNVD
Colorectal cancer	21297112	CNVD
Lynch syndrome	18415027	CNVD
Renal cell carcinoma	18592004	CNVD
Acute myeloid leukemia	20729466	CNVD
Urothelial carcinoma	18382360	CNVD
Melanoma	18172304	CNVD
Cervical cancer	21062161	CNVD
Hirschsprung''s Disease	21712996	CNVD
head and neck squamous cell carcinoma	17671120	CNVD
Insulin resistance	16721378	CNVD
Neuroblastoma	18664255	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Multiple myeloma	17077331	CNVD
Ewing''s sarcoma	21437220	CNVD
Neuroblastoma	21484798	CNVD
Non-small cell lung cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Oral cancer	19627613	CNVD
Renal cell carcinoma	19461508	CNVD
Epithelial cancer	22065749	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Acute myeloid leukemia	16864856	CNVD
Liposarcoma	21253554	CNVD
Basal cell lymphoma	21115979	CNVD
Endometrial cancer	22040021	CNVD
Pancreatic endocrine tumor	20981439	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	17387387	CNVD
Oral cancer	21386901	CNVD
Cutaneous squamous cell carcinomas	19131950	CNVD
Basal cell lymphoma	17053054	CNVD
Esophageal cancer	21851588	CNVD
Uveal melanoma	21693616	CNVD
Retinoblastoma	21504564	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
small cell lung cancer	20016488	CNVD
Breast cancer	21364760	CNVD
Schizophrenia	20967226	CNVD
Autism	22543975	CNVD
Attention deficit hyperactivity disorder	19546859	CNVD
lymphocytic leukemia	21291569	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
Non-syndromic sensorineural hearing loss	17289997	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Renal cell carcinoma	21668985	CNVD
Tetralogy of Fallot	22912587	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Autism	20685689	CNVD
Melanoma	20877625	CNVD
Pancreatic cancer	17952125	CNVD
Breast cancer	22522925	CNVD
Multiple myeloma	17550852	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD

Chromatin state (count:160 , 50 per page) page: 1 2 3 4

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:366000-410400	Weak transcription	Brain Anterior Caudate	brain
2	chr3:385200-420200	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr3:392400-409000	Weak transcription	Fetal Brain Female	brain
4	chr3:392800-406400	Weak transcription	Brain Germinal Matrix	brain
5	chr3:397200-415000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr3:397600-453400	Weak transcription	Brain Angular Gyrus	brain
7	chr3:398400-415000	Weak transcription	Brain Cingulate Gyrus	brain
8	chr3:398600-408800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr3:398600-411200	Weak transcription	Brain Hippocampus Middle	brain
10	chr3:399000-406000	Weak transcription	Cortex derived primary cultured neurospheres	brain
11	chr3:399000-414800	Weak transcription	Ovary	ovary
12	chr3:400800-413400	Weak transcription	Adipose Nuclei	Adipose
13	chr3:401400-405200	Weak transcription	Brain Substantia Nigra	brain
14	chr3:402200-409400	Weak transcription	Fetal Brain Male	brain
15	chr3:403000-405000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
16	chr3:403400-405000	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr3:404600-405000	Enhancers	Pancreatic Islets	Pancreatic Islet
18	chr3:405000-407600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr3:405000-409600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
20	chr3:407000-407600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr3:407000-407800	Enhancers	Fetal Lung	lung
22	chr3:407000-409200	Enhancers	Fetal Kidney	kidney
23	chr3:407600-409400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr3:408400-416200	Weak transcription	Brain Substantia Nigra	brain
25	chr3:408800-409200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr3:409000-409400	Strong transcription	Fetal Brain Female	brain
27	chr3:409400-410200	Weak transcription	Fetal Brain Female	brain
28	chr3:409400-419800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
29	chr3:409600-409800	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
30	chr3:411600-414600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
31	chr3:412000-414800	Weak transcription	Brain Germinal Matrix	brain
32	chr3:412800-430400	Weak transcription	Fetal Brain Female	brain
33	chr3:414600-415600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
34	chr3:414600-416800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
35	chr3:414800-415200	Genic enhancers	Ovary	ovary
36	chr3:414800-415400	Strong transcription	Brain Germinal Matrix	brain
37	chr3:414800-416200	Enhancers	Spleen	Spleen
38	chr3:414800-416400	Enhancers	Fetal Muscle Leg	muscle
39	chr3:414800-416400	Enhancers	Fetal Stomach	stomach
40	chr3:415000-415200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
41	chr3:415000-415400	Enhancers	Brain Cingulate Gyrus	brain
42	chr3:415000-415400	Bivalent Enhancer	Fetal Muscle Trunk	muscle
43	chr3:415200-415400	Enhancers	Left Ventricle	heart
44	chr3:415200-415600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
45	chr3:415200-415800	Enhancers	Ovary	ovary
46	chr3:415200-416400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
47	chr3:415200-416800	Enhancers	Liver	Liver
48	chr3:415400-415600	Bivalent Enhancer	Colon Smooth Muscle	Colon
49	chr3:415400-415600	Enhancers	Fetal Muscle Trunk	muscle
50	chr3:415400-430600	Weak transcription	Brain Germinal Matrix	brain

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