Variant report

Variant	nsv876296
Chromosome Location	chr3:497892-1334530
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:2961)
CpG islands
(count:1101)
Chromatin interactive
region (count:73)
LncRNA
region (count:23)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:2961 , 50 per page) page: 1 2 3 4 5 6 7 ... 60

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr3:534692-534822	HepG2	liver:	n/a	n/a
2	ATF1	chr3:1235289-1235354	K562	blood:	n/a	n/a
3	ATF1	chr3:1056506-1056524	K562	blood:	n/a	n/a
4	ATF2	chr3:1172821-1173212	H1-hESC	embryonic stem cell:	n/a	n/a
5	BACH1	chr3:1277576-1277666	H1-hESC	embryonic stem cell:	n/a	n/a
6	BACH1	chr3:1135881-1135904	H1-hESC	embryonic stem cell:	n/a	n/a
7	BACH1	chr3:954485-954653	H1-hESC	embryonic stem cell:	n/a	n/a
8	BACH1	chr3:516562-516874	H1-hESC	embryonic stem cell:	n/a	n/a
9	BACH1	chr3:888492-888519	H1-hESC	embryonic stem cell:	n/a	n/a
10	BACH1	chr3:577662-577951	H1-hESC	embryonic stem cell:	n/a	n/a
11	BACH1	chr3:541423-541496	H1-hESC	embryonic stem cell:	n/a	n/a
12	BACH1	chr3:1249806-1249899	H1-hESC	embryonic stem cell:	n/a	chr3:1249829-1249843
13	BATF	chr3:515014-515376	GM12878	blood:	n/a	chr3:515252-515263
14	BATF	chr3:599789-600089	GM12878	blood:	n/a	chr3:599953-599962
15	BATF	chr3:954466-954707	GM12878	blood:	n/a	chr3:954539-954550 chr3:954567-954578 chr3:954595-954606
16	BATF	chr3:515030-515408	GM12878	blood:	n/a	chr3:515252-515263
17	BATF	chr3:505464-505768	GM12878	blood:	n/a	n/a
18	BATF	chr3:954370-954767	GM12878	blood:	n/a	chr3:954539-954550 chr3:954567-954578 chr3:954595-954606
19	BATF	chr3:892892-893121	GM12878	blood:	n/a	chr3:892988-892999
20	BATF	chr3:892848-893082	GM12878	blood:	n/a	chr3:892988-892999
21	BATF	chr3:638972-639242	GM12878	blood:	n/a	chr3:639093-639102
22	BATF	chr3:599827-600084	GM12878	blood:	n/a	chr3:599953-599962
23	BCL11A	chr3:954445-954734	GM12878	blood:	n/a	n/a
24	BCL3	chr3:1149010-1149230	GM12878	blood:	n/a	n/a
25	BCLAF1	chr3:599656-600200	GM12878	blood:	n/a	chr3:599779-599788 chr3:599826-599835
26	BHLHE40	chr3:895419-895457	GM12878	blood:	n/a	n/a
27	BHLHE40	chr3:846853-846863	GM12878	blood:	n/a	n/a
28	BHLHE40	chr3:543200-543216	GM12878	blood:	n/a	n/a
29	BHLHE40	chr3:943924-944164	GM12878	blood:	n/a	n/a
30	BRCA1	chr3:961437-961458	GM12878	blood:	n/a	n/a
31	BRCA1	chr3:1128644-1129340	Hela-S3	cervix:	n/a	n/a
32	BRCA1	chr3:1123741-1124044	Hela-S3	cervix:	n/a	n/a
33	BRCA1	chr3:649451-649478	Hela-S3	cervix:	n/a	n/a
34	BRCA1	chr3:638578-639330	Hela-S3	cervix:	n/a	n/a
35	BRCA1	chr3:1225226-1225621	Hela-S3	cervix:	n/a	n/a
36	BRCA1	chr3:991509-991520	H1-hESC	embryonic stem cell:	n/a	n/a
37	BRCA1	chr3:674381-674581	H1-hESC	embryonic stem cell:	n/a	n/a
38	BRCA1	chr3:754720-755580	Hela-S3	cervix:	n/a	n/a
39	BRCA1	chr3:639591-639851	Hela-S3	cervix:	n/a	n/a
40	BRCA1	chr3:815996-816027	Hela-S3	cervix:	n/a	n/a
41	BRCA1	chr3:817416-817453	Hela-S3	cervix:	n/a	n/a
42	CEBPB	chr3:746911-747209	Hela-S3	cervix:	n/a	n/a
43	CEBPB	chr3:1285161-1285361	HepG2	liver:	n/a	chr3:1285182-1285193
44	CEBPB	chr3:1095814-1095950	A549	lung:	n/a	n/a
45	CEBPB	chr3:1023843-1024155	IMR90	lung:	n/a	chr3:1023996-1024007
46	CEBPB	chr3:1189186-1189393	A549	lung:	n/a	chr3:1189266-1189277
47	CEBPB	chr3:526427-526685	HepG2	liver:	n/a	n/a
48	CEBPB	chr3:1128986-1129357	IMR90	lung:	n/a	chr3:1129164-1129175
49	CEBPB	chr3:986492-986830	HepG2	liver:	n/a	chr3:986667-986678
50	CEBPB	chr3:775096-775429	Hela-S3	cervix:	n/a	n/a

(count:1101 , 50 per page) page: 1 2 3 4 5 6 7 ... 23

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr3:1134528-1134578	HRCEpiC	kidney:	n/a
2	chr3:577629-577679	HEEpiC	esophagus:	n/a
3	chr3:501673-501723	PANC-1	pancreas:	n/a
4	chr3:1134528-1134578	HRCEpiC	kidney:	n/a
5	chr3:577629-577679	HEEpiC	esophagus:	n/a
6	chr3:501673-501723	PANC-1	pancreas:	n/a
7	chr3:1173560-1173610	GM12892	blood:	n/a
8	chr3:782757-782807	HL-60	blood:	n/a
9	chr3:1134711-1134761	AG04449	skin:	fetal
10	chr3:1134366-1134416	GM12891	blood:	n/a
11	chr3:1134528-1134578	NHBE	bronchial:	n/a
12	chr3:501673-501723	Hepatocyte	liver:	n/a
13	chr3:1134005-1134055	NHBE	bronchial:	n/a
14	chr3:577821-577871	NB4	blood:	n/a
15	chr3:1173560-1173610	PFSK-1	brain:	n/a
16	chr3:1050278-1050328	HEK293	kidney:	embryo
17	chr3:1229376-1229426	HRCEpiC	kidney:	n/a
18	chr3:577964-578014	HEK293	kidney:	embryo
19	chr3:1133865-1133915	HRCEpiC	kidney:	n/a
20	chr3:1229376-1229426	NHBE	bronchial:	n/a
21	chr3:1134730-1134780	NH-A	brain:	n/a
22	chr3:1202463-1202513	HRPEpiC	eye:	n/a
23	chr3:1134366-1134416	K562	blood:	n/a
24	chr3:523375-523425	ECC-1	luminal epithelium:	n/a
25	chr3:577629-577679	HEK293	kidney:	embryo
26	chr3:782757-782807	HEEpiC	esophagus:	n/a
27	chr3:523375-523425	ovcar-3	ovarian:	n/a
28	chr3:523012-523062	AG04450	lung:	fetal
29	chr3:1229376-1229426	AG09309	skin:	n/a
30	chr3:1134366-1134416	HCT-116	colon:	n/a
31	chr3:523375-523425	GM19239	blood:	n/a
32	chr3:1202463-1202513	HRCEpiC	kidney:	n/a
33	chr3:1134528-1134578	ovcar-3	ovarian:	n/a
34	chr3:1133865-1133915	HCF	heart:	n/a
35	chr3:1284705-1284755	NB4	blood:	n/a
36	chr3:523012-523062	ProgFib	skin:	n/a
37	chr3:1134730-1134780	Jurkat	blood:	n/a
38	chr3:523012-523062	HCPEpiC	choroid plexus:	n/a
39	chr3:1134730-1134780	MCF-7	breast:	n/a
40	chr3:501673-501723	NHBE	bronchial:	n/a
41	chr3:1134005-1134055	HCF	heart:	n/a
42	chr3:1173560-1173610	CMK	blood:	n/a
43	chr3:1133865-1133915	SK-N-MC	brain:	n/a
44	chr3:1284705-1284755	NHBE	bronchial:	n/a
45	chr3:782757-782807	AG10803	skin:	n/a
46	chr3:1173560-1173610	GM19239	blood:	n/a
47	chr3:1050278-1050328	BJ	skin:	n/a
48	chr3:782757-782807	BJ	skin:	n/a
49	chr3:1202463-1202513	PFSK-1	brain:	n/a
50	chr3:501673-501723	BE2_C	brain:	n/a

(count:73 , 50 per page) page: 1 2

No.	Distal block	Cell Line	Cell type
1	chr20:14175439..14177996-chr3:730394..733241,2	MCF-7	breast:
2	chr3:556350..557928-chr3:558208..559835,2	MCF-7	breast:
3	chr3:844122..846364-chr3:847958..849773,2	K562	blood:
4	chr3:1183195..1185033-chr3:1185128..1187712,2	MCF-7	breast:
5	chr3:762317..764340-chr3:779905..782757,2	K562	blood:
6	chr3:950629..951227-chr3:2029405..2030169,2	MCF-7	breast:
7	chr3:1043997..1046659-chr3:1048163..1050652,2	K562	blood:
8	chr3:844122..846364-chr3:847958..849773,2	K562	blood:
9	chr3:522873..523625-chr3:674344..674995,2	MCF-7	breast:
10	chr3:1089175..1092606-chr3:1092889..1096075,3	K562	blood:
11	chr3:762317..764340-chr3:779905..782757,2	K562	blood:
12	chr3:709932..711493-chr3:712317..715172,2	K562	blood:
13	chr3:1123480..1124189-chr3:2029377..2029881,2	MCF-7	breast:
14	chr3:709932..711493-chr3:712317..715172,2	K562	blood:
15	chr20:19743891..19744638-chr3:1326228..1327123,2	MCF-7	breast:
16	chr3:751166..753010-chr3:765105..767568,2	K562	blood:
17	chr3:571404..573075-chr3:573790..576325,2	MCF-7	breast:
18	chr3:1271635..1273502-chr3:1276225..1279196,2	K562	blood:
19	chr3:1123458..1124156-chr3:2755562..2756408,3	MCF-7	breast:
20	chr3:1145760..1147872-chr3:1156472..1158821,2	K562	blood:
21	chr3:731301..733205-chr3:733252..736265,3	K562	blood:
22	chr3:731301..733205-chr3:733252..736265,3	K562	blood:
23	chr3:943774..944505-chr3:1390119..1390838,2	MCF-7	breast:
24	chr3:805612..808013-chr3:811141..813375,2	K562	blood:
25	chr21:9533639..9536328-chr3:614645..617390,2	MCF-7	breast:
26	chr3:1271635..1273502-chr3:1276225..1279196,2	K562	blood:
27	chr3:556350..557928-chr3:558208..559835,2	MCF-7	breast:
28	chr3:1271635..1274308-chr3:1276225..1277746,2	K562	blood:
29	chr3:674217..674800-chr3:1123463..1123990,2	MCF-7	breast:
30	chr3:674203..674975-chr3:2197712..2198482,2	MCF-7	breast:
31	chr3:1091106..1092914-chr3:1094575..1097571,2	K562	blood:
32	chr21:9537493..9539688-chr3:612236..614804,2	MCF-7	breast:
33	chr3:674217..674800-chr3:1123463..1123990,2	MCF-7	breast:
34	chr3:829999..831597-chr3:832456..834541,2	MCF-7	breast:
35	chr3:805612..808013-chr3:811141..813375,2	K562	blood:
36	chr2:44471645..44472524-chr3:1084585..1085105,2	K562	blood:
37	chr3:1049665..1052589-chr3:1054165..1056315,2	K562	blood:
38	chr3:1233578..1235618-chr3:1243417..1246040,2	K562	blood:
39	chr3:565796..568589-chr3:571178..572728,2	K562	blood:
40	chr3:554700..557337-chr3:557649..560284,2	K562	blood:
41	chr3:726576..727076-chr3:11025934..11026463,2	MCF-7	breast:
42	chr3:1145760..1147872-chr3:1156472..1158821,2	K562	blood:
43	chr3:1091106..1092914-chr3:1094575..1097571,2	K562	blood:
44	chr17:59489294..59491290-chr3:1177376..1179707,2	MCF-7	breast:
45	chr3:829999..831597-chr3:832456..834541,2	MCF-7	breast:
46	chr3:703062..705164-chr3:828470..830008,2	K562	blood:
47	chr12:101154422..101155178-chr3:753774..754622,2	MCF-7	breast:
48	chr3:1185425..1187107-chr3:1188609..1190735,2	K562	blood:
49	chr3:703062..705164-chr3:828470..830008,2	K562	blood:
50	chr3:571404..573075-chr3:573790..576325,2	MCF-7	breast:

(count:23 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-CNTN6-2	chr3:899428-899774	XLOC_002565
2	lnc-CHL1-3	chr3:882398-882493	NR_110118
3	lnc-CHL1-6	chr3:859059-862698	ucscGeneNc_uc003boy_1
4	lnc-CNTN6-2	chr3:898848-898956	NONHSAT087575
5	lnc-CHL1-3	chr3:884059-887698	NR_110118
6	lnc-CHL1-3	chr3:577936-578010	ENSG00000224957
7	lnc-CHL1-3	chr3:633788-633866	ENSG00000224957
8	lnc-CHL1-6	chr3:857398-857493	ucscGeneNc_uc003boy_1
9	lnc-CHL1-3	chr3:791898-791933	ENSG00000224957
10	lnc-CHL1-6	chr3:766898-766933	ucscGeneNc_uc003boy_1
11	lnc-CNTN6-2	chr3:899428-900630	NONHSAT087575
12	lnc-CHL1-3	chr3:633788-633866	NR_110118
13	lnc-IL5RA-14	chr3:659472-659997	NONHSAT087571
14	lnc-IL5RA-13	chr3:1107266-1107559	NONHSAT087577
15	lnc-CNTN6-2	chr3:898807-898956	XLOC_002565
16	lnc-CHL1-3	chr3:868690-868816	ENSG00000224957
17	lnc-CHL1-3	chr3:577941-579275	NONHSAT087570
18	lnc-CNTN6-1	chr3:1051052-1054618	XLOC_002566
19	lnc-CHL1-6	chr3:552914-553010	ucscGeneNc_uc003boy_1
20	lnc-CHL1-3	chr3:884059-884327	ENSG00000224957
21	lnc-CHL1-6	chr3:608788-608866	ucscGeneNc_uc003boy_1
22	lnc-CNTN6-1	chr3:1049819-1049950	XLOC_002566
23	lnc-CHL1-3	chr3:791898-791933	NR_110118

No data

Variant related genes	Relation type
ENSG00000224957	TF binding region
ENSG00000224239	TF binding region
RN7SL120P	TF binding region
ENSG00000238075	TF binding region
CNTN6	TF binding region
ENSG00000235158	TF binding region
ENSG00000224957	CpG island
ENSG00000224239	CpG island
RN7SL120P	CpG island
ENSG00000238075	CpG island
CNTN6	CpG island
ENSG00000235158	CpG island
ENSG00000183283	chromatin interactions
ENSG00000235158	chromatin interactions
IL10	miRNA target sites
HIF1A	miRNA target sites
CPEB4	miRNA target sites
COPS7A	miRNA target sites
DCBLD2	miRNA target sites

Extended variants
information (count: 15133 )
Associated
traits (count: 98 )

Variant overlapped rSNPs/rCNVs (count:15133 , 50 per page) page: 1 2 3 4 5 6 7 ... 303

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs9842070	chr3:497892-497893	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
2	rs142765076	chr3:497898-497899	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs376663352	chr3:497912-497913	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs555878329	chr3:497920-497921	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs567341687	chr3:497944-497945	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs538007148	chr3:497949-497950	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs2196032	chr3:497975-497976	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs577980382	chr3:497976-497977	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs545353830	chr3:497980-497981	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs371189726	chr3:498015-498016	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs572052202	chr3:498024-498025	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs184056348	chr3:498026-498027	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs185915755	chr3:498067-498068	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs190784784	chr3:498089-498090	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs199986917	chr3:498110-498111	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs531309630	chr3:498163-498164	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs146259970	chr3:498219-498220	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs148485187	chr3:498252-498253	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs574851130	chr3:498286-498287	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs9846631	chr3:498302-498303	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
21	rs183150597	chr3:498304-498305	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs527727086	chr3:498316-498317	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs75619237	chr3:498333-498334	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs142599792	chr3:498365-498366	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs187061407	chr3:498382-498383	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs560588032	chr3:498392-498393	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs7627479	chr3:498400-498401	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
28	rs191837696	chr3:498417-498418	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs182819049	chr3:498424-498425	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs377109136	chr3:498441-498442	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs187536402	chr3:498456-498457	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs538929671	chr3:498496-498497	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs554148090	chr3:498517-498518	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs79291657	chr3:498575-498576	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs536196524	chr3:498628-498629	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs74765600	chr3:498640-498641	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs11406304	chr3:498645-498646	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs397975150	chr3:498651-498652	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs576053787	chr3:498652-498653	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs540454807	chr3:498655-498656	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs543147986	chr3:498662-498663	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs564715282	chr3:498679-498680	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs150569840	chr3:498680-498681	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs545289360	chr3:498682-498683	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs73106999	chr3:498684-498685	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
46	rs139506896	chr3:498718-498719	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs559617484	chr3:498733-498734	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs73814802	chr3:498737-498738	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
49	rs372316874	chr3:498768-498769	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs561144795	chr3:498784-498785	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:98)

Disease	PMID	Source
Cancer	20164920	CNVD
Lung cancer	16618734	CNVD
Autism	18349135	CNVD
Breast cancer	20409316	CNVD
Myelofibrosis	22110671	CNVD
Autism	22241247	CNVD
Intellectual disability	22045946	CNVD
Squamous cell cancer	19607727	CNVD
Gastric adenocarcinoma	19115996	CNVD
sporadic birth defects	19047251	CNVD
Mental retardation	17124404	CNVD
abnormal development	18461090	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Sudden cardiac death	19188705	CNVD
Myeloproliferative neoplasm	20015882	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Ovarian cancer	21720365	CNVD
Neuroblastoma	18923191	CNVD
Papillary thyroid carcinoma	21436994	CNVD
Biliary cancer	19435499	CNVD
Medulloblastoma	21979893	CNVD
Esophageal squamous carcinoma	18405350	CNVD
Breast cancer	17603634	CNVD
Neuroblastoma	17327916	CNVD
Glioblastoma multiforme	21080181	CNVD
Colorectal cancer	21297112	CNVD
Lynch syndrome	18415027	CNVD
Renal cell carcinoma	18592004	CNVD
Acute myeloid leukemia	20729466	CNVD
Urothelial carcinoma	18382360	CNVD
Melanoma	18172304	CNVD
Cervical cancer	21062161	CNVD
Hirschsprung''s Disease	21712996	CNVD
head and neck squamous cell carcinoma	17671120	CNVD
Insulin resistance	16721378	CNVD
Neuroblastoma	18664255	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Multiple myeloma	17077331	CNVD
Ewing''s sarcoma	21437220	CNVD
Neuroblastoma	21484798	CNVD
Non-small cell lung cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Oral cancer	19627613	CNVD
Renal cell carcinoma	19461508	CNVD
Epithelial cancer	22065749	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Acute myeloid leukemia	16864856	CNVD
Liposarcoma	21253554	CNVD
Basal cell lymphoma	21115979	CNVD
Endometrial cancer	22040021	CNVD
Pancreatic endocrine tumor	20981439	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	17387387	CNVD
Oral cancer	21386901	CNVD
Cutaneous squamous cell carcinomas	19131950	CNVD
Basal cell lymphoma	17053054	CNVD
Esophageal cancer	21851588	CNVD
Uveal melanoma	21693616	CNVD
Retinoblastoma	21504564	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
small cell lung cancer	20016488	CNVD
Breast cancer	21364760	CNVD
Schizophrenia	20967226	CNVD
Autism	22543975	CNVD
Attention deficit hyperactivity disorder	19546859	CNVD
lymphocytic leukemia	21291569	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
Non-syndromic sensorineural hearing loss	17289997	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Renal cell carcinoma	21668985	CNVD
Tetralogy of Fallot	22912587	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Autism	20685689	CNVD
Multiple myeloma	17550852	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Non-syndromic sensorineural hearing loss	21293372	CNVD
early-passage human iPS cells	21368824	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD
Lung cancer	20668451	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Autism	22495311	CNVD
Cancer	20164919	CNVD
Bipolar disorder	19114987	CNVD
Lung cancer	18438408	CNVD
Breast cancer	22522925	CNVD
Rectal cancer	20877625	CNVD
cervicovaginal lavage	20877625	CNVD
Melanoma	20877625	CNVD
Pancreatic cancer	17952125	CNVD

Chromatin state (count:951 , 50 per page) page: 1 2 3 4 5 6 7 ... 20

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:492000-504600	Weak transcription	Aorta	Aorta
2	chr3:493000-500400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr3:493200-500400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr3:494200-500600	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr3:496800-498000	Enhancers	iPS-20b Cell Line	embryonic stem cell
6	chr3:497000-498200	Enhancers	Fetal Intestine Small	intestine
7	chr3:497600-500400	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr3:497800-498000	Enhancers	Fetal Brain Male	brain
9	chr3:497800-500000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
10	chr3:497800-500600	Weak transcription	Fetal Intestine Large	intestine
11	chr3:498000-500400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
12	chr3:498200-499200	Weak transcription	Fetal Brain Male	brain
13	chr3:498200-499400	Weak transcription	Brain Germinal Matrix	brain
14	chr3:498200-500400	Weak transcription	Fetal Intestine Small	intestine
15	chr3:499200-499800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr3:499200-500400	Enhancers	Fetal Brain Male	brain
17	chr3:499400-499600	Flanking Active TSS	Ovary	ovary
18	chr3:499400-499600	Enhancers	Psoas Muscle	Psoas
19	chr3:499400-499800	Enhancers	Brain Germinal Matrix	brain
20	chr3:499600-500200	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr3:499600-500200	Active TSS	Ovary	ovary
22	chr3:499600-504400	Weak transcription	Psoas Muscle	Psoas
23	chr3:499800-500000	Enhancers	Brain Hippocampus Middle	brain
24	chr3:499800-500000	Enhancers	Fetal Brain Female	brain
25	chr3:499800-500200	Enhancers	Cortex derived primary cultured neurospheres	brain
26	chr3:499800-500200	Enhancers	Brain Angular Gyrus	brain
27	chr3:499800-500200	Flanking Active TSS	Brain Germinal Matrix	brain
28	chr3:499800-500600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr3:499800-501800	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
30	chr3:500000-501200	Active TSS	Brain Hippocampus Middle	brain
31	chr3:500000-501400	Flanking Active TSS	Fetal Brain Female	brain
32	chr3:500000-503000	Enhancers	iPS-18 Cell Line	embryonic stem cell
33	chr3:500200-500600	Active TSS	Brain Angular Gyrus	brain
34	chr3:500200-500800	Active TSS	Brain Germinal Matrix	brain
35	chr3:500200-501000	Active TSS	Brain Cingulate Gyrus	brain
36	chr3:500200-501000	Enhancers	Ovary	ovary
37	chr3:500200-501800	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
38	chr3:500200-504400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chr3:500400-500600	Active TSS	Brain Substantia Nigra	brain
40	chr3:500400-500600	Enhancers	Fetal Muscle Leg	muscle
41	chr3:500400-501000	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
42	chr3:500400-501200	Enhancers	iPS-15b Cell Line	embryonic stem cell
43	chr3:500400-501200	Active TSS	Brain Inferior Temporal Lobe	brain
44	chr3:500400-501200	Flanking Active TSS	Fetal Brain Male	brain
45	chr3:500400-501400	Active TSS	Brain Anterior Caudate	brain
46	chr3:500400-501600	Enhancers	ES-I3 Cell Line	embryonic stem cell
47	chr3:500400-501600	Enhancers	iPS-20b Cell Line	embryonic stem cell
48	chr3:500400-501800	Enhancers	HUES48 Cell Line	embryonic stem cell
49	chr3:500400-502000	Enhancers	Fetal Intestine Small	intestine
50	chr3:500600-501000	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived

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