Variant report

Variant	nsv876730
Chromosome Location	chr3:42643935-42667936
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr3:42657119-42657126	K562	blood:	n/a	n/a
2	ARID3A	chr3:42644662-42645135	K562	blood:	n/a	n/a
3	ARID3A	chr3:42642770-42644222	K562	blood:	n/a	n/a
4	ARID3A	chr3:42652230-42652719	K562	blood:	n/a	n/a
5	ARID3A	chr3:42647088-42647906	K562	blood:	n/a	chr3:42647441-42647457
6	ARID3A	chr3:42664238-42664367	K562	blood:	n/a	n/a
7	ARID3A	chr3:42645655-42646075	K562	blood:	n/a	n/a
8	ARID3A	chr3:42654825-42655496	K562	blood:	n/a	n/a
9	ARID3A	chr3:42654950-42655363	HepG2	liver:	n/a	n/a
10	ATF1	chr3:42652588-42652720	K562	blood:	n/a	n/a
11	ATF1	chr3:42647190-42647721	K562	blood:	n/a	n/a
12	ATF3	chr3:42647324-42647752	K562	blood:	n/a	n/a
13	BACH1	chr3:42654931-42655360	H1-hESC	embryonic stem cell:	n/a	n/a
14	BACH1	chr3:42644904-42645104	K562	blood:	n/a	n/a
15	BCL3	chr3:42654523-42654773	GM12878	blood:	n/a	n/a
16	BCL3	chr3:42654473-42654845	GM12878	blood:	n/a	n/a
17	CBX3	chr3:42647255-42647729	K562	blood:	n/a	n/a
18	CCNT2	chr3:42652649-42652704	K562	blood:	n/a	n/a
19	CCNT2	chr3:42647340-42647693	K562	blood:	n/a	n/a
20	CEBPB	chr3:42644736-42644933	HepG2	liver:	n/a	chr3:42644802-42644813
21	CEBPB	chr3:42643727-42644010	Hela-S3	cervix:	n/a	chr3:42643867-42643878
22	CEBPB	chr3:42643705-42644059	ECC-1	luminal epithelium:	n/a	chr3:42643867-42643878
23	CEBPB	chr3:42659805-42659840	H1-hESC	embryonic stem cell:	n/a	n/a
24	CEBPB	chr3:42643689-42644108	ECC-1	luminal epithelium:	n/a	chr3:42643867-42643878
25	CEBPB	chr3:42643748-42644032	HepG2	liver:	n/a	chr3:42643867-42643878
26	CEBPB	chr3:42656589-42656789	K562	blood:	n/a	n/a
27	CEBPB	chr3:42659682-42659925	K562	blood:	n/a	n/a
28	CEBPB	chr3:42644652-42645287	K562	blood:	n/a	chr3:42644802-42644813
29	CTCF	chr3:42654920-42655070	HUVEC	blood vessel:	n/a	n/a
30	CTCF	chr3:42655220-42655370	HAc	cerebellar:	n/a	n/a
31	CTCF	chr3:42655100-42655250	HUVEC	blood vessel:	n/a	chr3:42655175-42655196 chr3:42655180-42655198 chr3:42655187-42655194
32	CTCF	chr3:42655060-42655210	HMEC	breast:	n/a	chr3:42655175-42655196 chr3:42655180-42655198 chr3:42655187-42655194
33	CTCF	chr3:42654940-42655090	GM12873	blood:	n/a	n/a
34	CTCF	chr3:42655080-42655230	GM12869	blood:	n/a	chr3:42655175-42655196 chr3:42655180-42655198 chr3:42655187-42655194
35	CTCF	chr3:42655080-42655230	HEK293	kidney:	n/a	chr3:42655175-42655196 chr3:42655180-42655198 chr3:42655187-42655194
36	CTCF	chr3:42655040-42655322	GM13977	blood:	n/a	chr3:42655175-42655196 chr3:42655180-42655198 chr3:42655187-42655194
37	CTCF	chr3:42655120-42655270	HBMEC	blood vessel:	n/a	chr3:42655175-42655196 chr3:42655180-42655198 chr3:42655187-42655194
38	CTCF	chr3:42655000-42655150	GM12872	blood:	n/a	n/a
39	CTCF	chr3:42655120-42655270	AG09309	skin:	n/a	chr3:42655175-42655196 chr3:42655180-42655198 chr3:42655187-42655194
40	CTCF	chr3:42655180-42655330	GM12871	blood:	n/a	chr3:42655180-42655198 chr3:42655187-42655194
41	CTCF	chr3:42655060-42655210	HCT-116	colon:	n/a	chr3:42655175-42655196 chr3:42655180-42655198 chr3:42655187-42655194
42	CTCF	chr3:42655120-42655270	HUVEC	blood vessel:	n/a	chr3:42655175-42655196 chr3:42655180-42655198 chr3:42655187-42655194
43	CTCF	chr3:42654720-42654870	GM12873	blood:	n/a	n/a
44	CTCF	chr3:42655200-42655350	A549	lung:	n/a	n/a
45	CTCF	chr3:42655066-42655275	GM12878	blood:	n/a	chr3:42655175-42655196 chr3:42655180-42655198 chr3:42655187-42655194
46	CTCF	chr3:42655220-42655370	RPTEC	kidney:	n/a	n/a
47	CTCF	chr3:42654520-42654670	HVMF	connective:	n/a	n/a
48	CTCF	chr3:42655100-42655250	AG04450	lung:	n/a	chr3:42655175-42655196 chr3:42655180-42655198 chr3:42655187-42655194
49	CTCF	chr3:42655100-42655250	GM12865	blood:	n/a	chr3:42655175-42655196 chr3:42655180-42655198 chr3:42655187-42655194
50	CTCF	chr3:42655120-42655270	HEEpiC	esophagus:	n/a	chr3:42655175-42655196 chr3:42655180-42655198 chr3:42655187-42655194

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr3:42645487-42645537	SKMC	muscle:	n/a
2	chr3:42645487-42645537	AG04449	skin:	fetal
3	chr3:42645487-42645537	Hela-S3	cervix:	n/a
4	chr3:42645487-42645537	HEEpiC	esophagus:	n/a
5	chr3:42657618-42657668	H1-hESC	embryonic stem cell:	embryo
6	chr3:42645487-42645537	MCF10A-Er-Src	breast:	n/a
7	chr3:42645487-42645537	ProgFib	skin:	n/a
8	chr3:42645487-42645537	HCPEpiC	choroid plexus:	n/a
9	chr3:42645487-42645537	PANC-1	pancreas:	n/a
10	chr3:42657618-42657668	HCF	heart:	n/a
11	chr3:42645487-42645537	HL-60	blood:	n/a
12	chr3:42645487-42645537	HNPCEpiC	eye:	n/a
13	chr3:42645487-42645537	GM12891	blood:	n/a
14	chr3:42657618-42657668	HPAEpiC	pulmonary alveolar:	n/a
15	chr3:42645487-42645537	Jurkat	blood:	n/a
16	chr3:42645487-42645537	ovcar-3	ovarian:	n/a
17	chr3:42645487-42645537	SK-N-MC	brain:	n/a
18	chr3:42657618-42657668	ProgFib	skin:	n/a
19	chr3:42657618-42657668	HRE	kidney:	n/a
20	chr3:42657618-42657668	PrEC	prostate:	n/a
21	chr3:42657618-42657668	NHBE	bronchial:	n/a
22	chr3:42645487-42645537	GM19239	blood:	n/a
23	chr3:42645487-42645537	HMEC	breast:	n/a
24	chr3:42645487-42645537	HCM	heart:	n/a
25	chr3:42657618-42657668	HUVEC	blood vessel:	n/a
26	chr3:42657618-42657668	HNPCEpiC	eye:	n/a
27	chr3:42657618-42657668	HepG2	liver:	n/a
28	chr3:42657618-42657668	HL-60	blood:	n/a
29	chr3:42657618-42657668	NT2-D1	testis:	n/a
30	chr3:42657618-42657668	SK-N-SH	brain:	n/a
31	chr3:42645487-42645537	K562	blood:	n/a
32	chr3:42657618-42657668	HMEC	breast:	n/a
33	chr3:42657618-42657668	K562	blood:	n/a
34	chr3:42657618-42657668	A549	lung:	n/a
35	chr3:42645487-42645537	U87	brain:	n/a
36	chr3:42645487-42645537	GM06990	blood:	n/a
37	chr3:42645487-42645537	HRCEpiC	kidney:	n/a
38	chr3:42657618-42657668	Hela-S3	cervix:	n/a
39	chr3:42657618-42657668	HIPEpiC	eye:	n/a
40	chr3:42657618-42657668	GM12878	blood:	n/a
41	chr3:42645487-42645537	HepG2	liver:	n/a
42	chr3:42657618-42657668	ovcar-3	ovarian:	n/a
43	chr3:42645487-42645537	HCT-116	colon:	n/a
44	chr3:42645487-42645537	LNCaP	prostate:	n/a
45	chr3:42657618-42657668	HAEpiC	amniotic membrane:	n/a
46	chr3:42645487-42645537	T-47D	breast:	n/a
47	chr3:42657618-42657668	Hepatocyte	liver:	n/a
48	chr3:42657618-42657668	SKMC	muscle:	n/a
49	chr3:42657618-42657668	NH-A	brain:	n/a
50	chr3:42645487-42645537	GM12892	blood:	n/a

No.	Distal block	Cell Line	Cell type
1	chr3:42659807..42662376-chr3:42694804..42697042,2	MCF-7	breast:
2	chr3:42604560..42606277-chr3:42641170..42643967,2	K562	blood:
3	chr3:42588038..42590456-chr3:42657625..42660579,3	K562	blood:
4	chr3:42632973..42636724-chr3:42645956..42649361,3	MCF-7	breast:
5	chr3:42604086..42606277-chr3:42642467..42644274,2	K562	blood:
6	chr3:42647403..42649069-chr3:42694170..42697122,2	K562	blood:
7	chr3:42659157..42660714-chr3:42671631..42673408,2	K562	blood:
8	chr3:42538804..42541639-chr3:42648578..42650101,2	MCF-7	breast:
9	chr3:42613896..42614402-chr3:42654824..42655660,2	MCF-7	breast:
10	chr3:42655417..42657513-chr3:42690626..42693228,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-SS18L2-2	chr3:42652595-42652676	NONHSAT089239
2	lnc-SEC22C-2	chr3:42653782-42653859	ENSG00000230084.1
3	lnc-SEC22C-2	chr3:42665256-42665304	ENSG00000230084.1
4	lnc-SS18L2-2	chr3:42661156-42663008	NONHSAT089240
5	lnc-SEC22C-2	chr3:42653784-42653859	ENSG00000230084.1
6	lnc-SS18L2-2	chr3:42660512-42660619	NONHSAT089240
7	lnc-SS18L2-2	chr3:42659062-42659136	NONHSAT089240
8	lnc-SS18L2-2	chr3:42642476-42644548	NONHSAT089241
9	lnc-SEC22C-4	chr3:42664567-42665237	predAs_chen_BU632018_1

Variant related genes	Relation type
NKTR	TF binding region
SEC22C	TF binding region
NKTR	CpG island
SEC22C	CpG island
ENSG00000093183	chromatin interactions
ENSG00000230084	chromatin interactions
ENSG00000114853	chromatin interactions
ENSG00000114857	chromatin interactions

Extended variants
information (count: 829 )
Associated
traits (count: 89 )

Variant overlapped rSNPs/rCNVs (count:829 , 50 per page) page: 1 2 3 4 5 6 7 ... 17

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs13100261	chr3:42643935-42643936	Active TSS Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Enhancers Genic enhancers	TF binding region Chromatin interactive region lncRNA	2 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
2	rs546694724	chr3:42643943-42643944	Active TSS Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Enhancers Genic enhancers	TF binding region Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
3	rs537039842	chr3:42643976-42643977	Active TSS Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Enhancers Genic enhancers	TF binding region Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
4	rs368817683	chr3:42644002-42644003	Weak transcription Genic enhancers Transcr. at gene 5' and 3' Active TSS Enhancers Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
5	rs200659881	chr3:42644015-42644016	Weak transcription Genic enhancers Transcr. at gene 5' and 3' Active TSS Enhancers Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
6	rs201124480	chr3:42644016-42644017	Weak transcription Genic enhancers Transcr. at gene 5' and 3' Active TSS Enhancers Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
7	rs202240420	chr3:42644017-42644018	Weak transcription Genic enhancers Transcr. at gene 5' and 3' Active TSS Enhancers Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
8	rs566624160	chr3:42644030-42644031	Weak transcription Genic enhancers Transcr. at gene 5' and 3' Active TSS Enhancers Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
9	rs538688640	chr3:42644039-42644040	Weak transcription Genic enhancers Transcr. at gene 5' and 3' Active TSS Enhancers Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
10	rs371441727	chr3:42644056-42644057	Weak transcription Genic enhancers Transcr. at gene 5' and 3' Active TSS Enhancers Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
11	rs115307300	chr3:42644061-42644062	Weak transcription Genic enhancers Transcr. at gene 5' and 3' Active TSS Enhancers Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
12	rs575922028	chr3:42644092-42644093	Weak transcription Genic enhancers Transcr. at gene 5' and 3' Active TSS Enhancers Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
13	rs71323161	chr3:42644101-42644102	Weak transcription Genic enhancers Transcr. at gene 5' and 3' Active TSS Enhancers Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
14	rs138347653	chr3:42644121-42644122	Weak transcription Genic enhancers Transcr. at gene 5' and 3' Active TSS Enhancers Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
15	rs571714680	chr3:42644123-42644124	Weak transcription Genic enhancers Transcr. at gene 5' and 3' Active TSS Enhancers Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
16	rs61205573	chr3:42644135-42644136	Weak transcription Genic enhancers Transcr. at gene 5' and 3' Active TSS Enhancers Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
17	rs140136843	chr3:42644151-42644152	Weak transcription Genic enhancers Transcr. at gene 5' and 3' Active TSS Enhancers Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
18	rs183072569	chr3:42644247-42644248	Weak transcription Strong transcription Enhancers Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
19	rs553737320	chr3:42644278-42644279	Weak transcription Strong transcription Enhancers Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS	TF binding region lncRNA	1 gene(s)	Overlapped CNVs	n/a
20	rs540781680	chr3:42644325-42644326	Weak transcription Strong transcription Enhancers Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS	TF binding region lncRNA	1 gene(s)	Overlapped CNVs	n/a
21	rs200396115	chr3:42644334-42644335	Weak transcription Strong transcription Enhancers Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS	TF binding region lncRNA	1 gene(s)	Overlapped CNVs	n/a
22	rs188452639	chr3:42644377-42644378	Weak transcription Strong transcription Enhancers Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS	TF binding region lncRNA	1 gene(s)	Overlapped CNVs	n/a
23	rs114333086	chr3:42644395-42644396	Weak transcription Strong transcription Enhancers Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS	TF binding region lncRNA	1 gene(s)	Overlapped CNVs	n/a
24	rs193036246	chr3:42644404-42644405	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS	TF binding region lncRNA	1 gene(s)	Overlapped CNVs	n/a
25	rs115468856	chr3:42644424-42644425	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS	TF binding region lncRNA	1 gene(s)	Overlapped CNVs	n/a
26	rs539633614	chr3:42644517-42644518	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS	TF binding region lncRNA	1 gene(s)	Overlapped CNVs	n/a
27	rs35896209	chr3:42644518-42644519	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS	TF binding region lncRNA	1 gene(s)	Overlapped CNVs	n/a
28	rs75647357	chr3:42644519-42644520	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS	TF binding region lncRNA	1 gene(s)	Overlapped CNVs	n/a
29	rs537520758	chr3:42644529-42644530	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS	TF binding region lncRNA	1 gene(s)	Overlapped CNVs	n/a
30	rs531305250	chr3:42644624-42644625	Weak transcription Genic enhancers ZNF genes & repeats Strong transcription Enhancers Active TSS Flanking Active TSS	TF binding region	1 gene(s)	Overlapped CNVs	n/a
31	rs539741192	chr3:42644670-42644671	Weak transcription Genic enhancers ZNF genes & repeats Strong transcription Enhancers Active TSS Flanking Active TSS	TF binding region	1 gene(s)	Overlapped CNVs	n/a
32	rs561973297	chr3:42644675-42644676	Weak transcription Genic enhancers ZNF genes & repeats Strong transcription Enhancers Active TSS Flanking Active TSS	TF binding region	1 gene(s)	Overlapped CNVs	n/a
33	rs148984980	chr3:42644687-42644688	Weak transcription Genic enhancers ZNF genes & repeats Strong transcription Enhancers Active TSS Flanking Active TSS	TF binding region	1 gene(s)	Overlapped CNVs	n/a
34	rs59448873	chr3:42644688-42644689	Weak transcription Genic enhancers ZNF genes & repeats Strong transcription Enhancers Active TSS Flanking Active TSS	TF binding region	1 gene(s)	Overlapped CNVs	n/a
35	rs397940753	chr3:42644690-42644691	Weak transcription Genic enhancers ZNF genes & repeats Strong transcription Enhancers Active TSS Flanking Active TSS	TF binding region	1 gene(s)	Overlapped CNVs	n/a
36	rs201064472	chr3:42644701-42644702	Weak transcription Genic enhancers ZNF genes & repeats Strong transcription Enhancers Active TSS Flanking Active TSS	TF binding region	1 gene(s)	Overlapped CNVs	n/a
37	rs527542446	chr3:42644716-42644717	Weak transcription Genic enhancers ZNF genes & repeats Strong transcription Enhancers Active TSS Flanking Active TSS	TF binding region	1 gene(s)	Overlapped CNVs	n/a
38	rs547181882	chr3:42644728-42644729	Weak transcription Genic enhancers ZNF genes & repeats Strong transcription Enhancers Active TSS Flanking Active TSS	TF binding region	1 gene(s)	Overlapped CNVs	n/a
39	rs638904	chr3:42644781-42644782	Weak transcription Genic enhancers ZNF genes & repeats Strong transcription Enhancers Active TSS Flanking Active TSS	TF binding region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
40	rs538727139	chr3:42644827-42644828	Weak transcription ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Enhancers Genic enhancers Active TSS	TF binding region	1 gene(s)	Overlapped CNVs	n/a
41	rs147748762	chr3:42644832-42644833	Weak transcription ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Enhancers Genic enhancers Active TSS	TF binding region	1 gene(s)	Overlapped CNVs	n/a
42	rs372241843	chr3:42644847-42644848	Weak transcription ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Enhancers Genic enhancers Active TSS	TF binding region	1 gene(s)	Overlapped CNVs	n/a
43	rs376932471	chr3:42644852-42644853	Weak transcription ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Enhancers Genic enhancers Active TSS	TF binding region	1 gene(s)	Overlapped CNVs	n/a
44	rs7625733	chr3:42644865-42644866	Weak transcription ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Enhancers Genic enhancers Active TSS	TF binding region	1 gene(s)	Overlapped CNVs	n/a
45	rs639345	chr3:42644866-42644867	Weak transcription ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Enhancers Genic enhancers Active TSS	TF binding region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
46	rs538198335	chr3:42644871-42644872	Weak transcription ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Enhancers Genic enhancers Active TSS	TF binding region	1 gene(s)	Overlapped CNVs	n/a
47	rs554966123	chr3:42644894-42644895	Weak transcription ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Enhancers Genic enhancers Active TSS	TF binding region	1 gene(s)	Overlapped CNVs	n/a
48	rs574191371	chr3:42644924-42644925	Weak transcription ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Enhancers Genic enhancers Active TSS	TF binding region	1 gene(s)	Overlapped CNVs	n/a
49	rs575072348	chr3:42644941-42644942	Weak transcription ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Enhancers Genic enhancers Active TSS	TF binding region	1 gene(s)	Overlapped CNVs	n/a
50	rs373589597	chr3:42644943-42644944	Weak transcription ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Enhancers Genic enhancers Active TSS	TF binding region	1 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:89)

Disease	PMID	Source
Glioblastoma multiforme	21080181	CNVD
Neuroblastoma	18923191	CNVD
Colorectal cancer	21297112	CNVD
Lynch syndrome	18415027	CNVD
Renal cell carcinoma	18592004	CNVD
Acute myeloid leukemia	20729466	CNVD
Urothelial carcinoma	18382360	CNVD
Melanoma	18172304	CNVD
Cervical cancer	21062161	CNVD
Hirschsprung''s Disease	21712996	CNVD
head and neck squamous cell carcinoma	17671120	CNVD
Insulin resistance	16721378	CNVD
Neuroblastoma	18664255	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Multiple myeloma	17077331	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Ewing''s sarcoma	21437220	CNVD
Neuroblastoma	21484798	CNVD
Non-small cell lung cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Oral cancer	19627613	CNVD
Renal cell carcinoma	19461508	CNVD
Epithelial cancer	22065749	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Acute myeloid leukemia	16864856	CNVD
Liposarcoma	21253554	CNVD
Basal cell lymphoma	21115979	CNVD
Endometrial cancer	22040021	CNVD
Pancreatic endocrine tumor	20981439	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	17387387	CNVD
Oral cancer	21386901	CNVD
Cutaneous squamous cell carcinomas	19131950	CNVD
Medulloblastoma	21979893	CNVD
Basal cell lymphoma	17053054	CNVD
Esophageal cancer	21851588	CNVD
Uveal melanoma	21693616	CNVD
Retinoblastoma	21504564	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Renal cell carcinoma	21668985	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Lung cancer	20668451	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
small cell lung cancer	20016488	CNVD
Lung cancer	18438408	CNVD
Intellectual disability	22102821	CNVD
Breast cancer	17603634	CNVD
Esophageal cancer	20955586	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Myofibroblastic sarcoma	19369631	CNVD
Breast cancer	17133270	CNVD
Uveal melanoma	20484589	CNVD
Autism	22495311	CNVD
Melanoma	20688739	CNVD
Acute myeloid leukemia	21251322	CNVD
Hepatocellular carcinoma	16750200	CNVD
Cancer	21183584	CNVD
Wilms tumour	17204608	CNVD
Biliary cancer	19435499	CNVD
Non-small cell lung cancer	20864512	CNVD
Non-small cell lung cancer	21829676	CNVD
Kartagener syndrome	16639409	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Bipolar disorder	20877625	CNVD
Bipolar disorder	21956041	CNVD
Bipolar disorder	22241247	CNVD
Biliary cancer	18923514	CNVD
Breast cancer	21509527	CNVD
Melanoma	21693616	CNVD
Myelofibrosis	22110671	CNVD
Acute lymphoblastic leukemia	17443227	CNVD
Breast cancer	20409316	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Malignant mesothelioma	18160781	CNVD
Pleural malignant mesothelioma	18160781	CNVD
Breast cancer	21364760	CNVD
abnormal development	18461090	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Breast cancer	22522925	CNVD
Pancreatic cancer	17952125	CNVD
Non-syndromic sensorineural hearing loss	18451855	CNVD

Chromatin state (count:1199 , 50 per page) page: 1 2 3 4 5 6 7 ... 24

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:42641200-42644000	Active TSS	ES-I3 Cell Line	embryonic stem cell
2	chr3:42641200-42644000	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr3:42641200-42644000	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr3:42641200-42644200	Active TSS	HUES48 Cell Line	embryonic stem cell
5	chr3:42641200-42644200	Active TSS	HMEC	breast
6	chr3:42641400-42644000	Active TSS	Left Ventricle	heart
7	chr3:42642200-42644000	Flanking Active TSS	Primary B cells from cord blood	blood
8	chr3:42642600-42644000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr3:42642800-42644000	Flanking Active TSS	Primary hematopoietic stem cells	blood
10	chr3:42642800-42644000	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
11	chr3:42642800-42644000	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
12	chr3:42642800-42644000	Flanking Active TSS	Brain Hippocampus Middle	brain
13	chr3:42642800-42644000	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
14	chr3:42642800-42644000	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
15	chr3:42642800-42644000	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
16	chr3:42642800-42644200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr3:42642800-42646200	Weak transcription	Spleen	Spleen
18	chr3:42643000-42644000	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
19	chr3:42643000-42644000	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
20	chr3:42643000-42644000	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
21	chr3:42643000-42644000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr3:42643000-42644000	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
23	chr3:42643000-42644000	Flanking Active TSS	Adipose Nuclei	Adipose
24	chr3:42643000-42644000	Flanking Active TSS	Liver	Liver
25	chr3:42643000-42644000	Flanking Active TSS	Brain Substantia Nigra	brain
26	chr3:42643000-42644000	Flanking Active TSS	Duodenum Mucosa	Duodenum
27	chr3:42643000-42644000	Flanking Active TSS	Stomach Smooth Muscle	stomach
28	chr3:42643000-42644000	Flanking Active TSS	NHEK	skin
29	chr3:42643000-42644000	Flanking Active TSS	Osteobl	bone
30	chr3:42643000-42644200	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr3:42643000-42644200	Flanking Active TSS	Brain Angular Gyrus	brain
32	chr3:42643000-42644200	Flanking Active TSS	Brain Anterior Caudate	brain
33	chr3:42643000-42644400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
34	chr3:42643000-42646200	Weak transcription	Pancreas	Pancrea
35	chr3:42643000-42650000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
36	chr3:42643000-42650000	Weak transcription	Esophagus	oesophagus
37	chr3:42643200-42644000	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
38	chr3:42643200-42644000	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
39	chr3:42643200-42644000	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
40	chr3:42643200-42644000	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
41	chr3:42643200-42644000	Flanking Active TSS	Duodenum Smooth Muscle	Duodenum
42	chr3:42643200-42644000	Flanking Active TSS	Fetal Lung	lung
43	chr3:42643200-42644200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
44	chr3:42643200-42644200	Enhancers	Primary neutrophils fromperipheralblood	blood
45	chr3:42643200-42644400	Enhancers	Primary B cells from peripheral blood	blood
46	chr3:42643200-42644600	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
47	chr3:42643200-42644800	Enhancers	Sigmoid Colon	Sigmoid Colon
48	chr3:42643200-42644800	Enhancers	Small Intestine	intestine
49	chr3:42643200-42648400	Weak transcription	Placenta	Placenta
50	chr3:42643200-42649600	Weak transcription	Lung	lung

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