Variant report

Variant	nsv876805
Chromosome Location	chr3:53865731-53883722
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1006)
CpG islands
(count:674)
Chromatin interactive
region (count:16)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1006 , 50 per page) page: 1 2 3 4 5 6 7 ... 21

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr3:53878608-53878939	HepG2	liver:	n/a	n/a
2	ARID3A	chr3:53880305-53880971	HepG2	liver:	n/a	n/a
3	ARID3A	chr3:53876698-53878019	HepG2	liver:	n/a	chr3:53877014-53877030
4	ARID3A	chr3:53875409-53875638	HepG2	liver:	n/a	n/a
5	BACH1	chr3:53879511-53879848	H1-hESC	embryonic stem cell:	n/a	n/a
6	BACH1	chr3:53876560-53877103	H1-hESC	embryonic stem cell:	n/a	n/a
7	BHLHE40	chr3:53880315-53880471	A549	lung:	n/a	n/a
8	BHLHE40	chr3:53880154-53880774	HepG2	liver:	n/a	n/a
9	BHLHE40	chr3:53882631-53882725	GM12878	blood:	n/a	n/a
10	BHLHE40	chr3:53876853-53877464	GM12878	blood:	n/a	n/a
11	BHLHE40	chr3:53877854-53878245	GM12878	blood:	n/a	n/a
12	BHLHE40	chr3:53880224-53880527	K562	blood:	n/a	n/a
13	BHLHE40	chr3:53876815-53877169	HepG2	liver:	n/a	n/a
14	BHLHE40	chr3:53880178-53880482	HepG2	liver:	n/a	n/a
15	BHLHE40	chr3:53876633-53877763	HepG2	liver:	n/a	n/a
16	BHLHE40	chr3:53879719-53880817	GM12878	blood:	n/a	chr3:53880063-53880079
17	BRCA1	chr3:53876900-53877389	HepG2	liver:	n/a	n/a
18	BRCA1	chr3:53879183-53879326	HepG2	liver:	n/a	n/a
19	BRCA1	chr3:53879626-53879935	Hela-S3	cervix:	n/a	n/a
20	BRCA1	chr3:53880497-53880762	HepG2	liver:	n/a	n/a
21	CCNT2	chr3:53880326-53880543	K562	blood:	n/a	n/a
22	CEBPB	chr3:53879581-53880012	H1-hESC	embryonic stem cell:	n/a	n/a
23	CEBPB	chr3:53876851-53877764	HepG2	liver:	n/a	n/a
24	CEBPB	chr3:53880283-53880471	H1-hESC	embryonic stem cell:	n/a	n/a
25	CEBPB	chr3:53876832-53877005	HepG2	liver:	n/a	n/a
26	CEBPB	chr3:53880290-53880553	Hela-S3	cervix:	n/a	n/a
27	CEBPB	chr3:53879606-53879989	Hela-S3	cervix:	n/a	n/a
28	CEBPB	chr3:53876034-53876183	HepG2	liver:	n/a	n/a
29	CEBPB	chr3:53877460-53877686	HepG2	liver:	n/a	n/a
30	CEBPD	chr3:53880128-53880796	HepG2	liver:	n/a	n/a
31	CEBPD	chr3:53877372-53877757	HepG2	liver:	n/a	n/a
32	CEBPD	chr3:53876789-53877212	HepG2	liver:	n/a	n/a
33	CEBPD	chr3:53876698-53877268	HepG2	liver:	n/a	n/a
34	CEBPD	chr3:53880268-53880763	HepG2	liver:	n/a	n/a
35	CHD1	chr3:53879613-53879845	GM12878	blood:	n/a	n/a
36	CHD1	chr3:53880195-53880679	GM12878	blood:	n/a	n/a
37	CHD1	chr3:53879757-53879948	H1-hESC	embryonic stem cell:	n/a	n/a
38	CHD1	chr3:53880227-53880385	H1-hESC	embryonic stem cell:	n/a	n/a
39	CHD1	chr3:53876879-53876933	GM12878	blood:	n/a	n/a
40	CHD1	chr3:53878335-53878370	GM12878	blood:	n/a	n/a
41	CHD2	chr3:53878153-53878190	HepG2	liver:	n/a	n/a
42	CHD2	chr3:53877689-53878339	GM12878	blood:	n/a	n/a
43	CHD2	chr3:53879789-53879807	GM12878	blood:	n/a	n/a
44	CHD2	chr3:53879908-53879984	HepG2	liver:	n/a	n/a
45	CHD2	chr3:53880264-53880758	Hela-S3	cervix:	n/a	n/a
46	CHD2	chr3:53880266-53880507	GM12878	blood:	n/a	n/a
47	CHD2	chr3:53880385-53880884	H1-hESC	embryonic stem cell:	n/a	n/a
48	CHD2	chr3:53879555-53880046	Hela-S3	cervix:	n/a	n/a
49	CHD2	chr3:53875490-53875659	HepG2	liver:	n/a	n/a
50	CHD2	chr3:53879510-53879857	H1-hESC	embryonic stem cell:	n/a	n/a

(count:674 , 50 per page) page: 1 2 3 4 5 6 7 ... 14

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr3:53877436-53877486	NHDF-neo	bronchial:	n/a
2	chr3:53879950-53880000	NHDF-neo	bronchial:	n/a
3	chr3:53877436-53877486	HRPEpiC	eye:	n/a
4	chr3:53877436-53877486	NHDF-neo	bronchial:	n/a
5	chr3:53879950-53880000	NHDF-neo	bronchial:	n/a
6	chr3:53877436-53877486	HRPEpiC	eye:	n/a
7	chr3:53880853-53880903	Jurkat	blood:	n/a
8	chr3:53880366-53880416	NHBE	bronchial:	n/a
9	chr3:53880378-53880428	SKMC	muscle:	n/a
10	chr3:53880376-53880426	PFSK-1	brain:	n/a
11	chr3:53879737-53879787	H1-hESC	embryonic stem cell:	embryo
12	chr3:53880378-53880428	GM19239	blood:	n/a
13	chr3:53879950-53880000	ECC-1	luminal epithelium:	n/a
14	chr3:53879950-53880000	MCF10A-Er-Src	breast:	n/a
15	chr3:53880717-53880767	GM12891	blood:	n/a
16	chr3:53880872-53880922	AG10803	skin:	n/a
17	chr3:53880853-53880903	HNPCEpiC	eye:	n/a
18	chr3:53877436-53877486	HIPEpiC	eye:	n/a
19	chr3:53880376-53880426	BJ	skin:	n/a
20	chr3:53880872-53880922	HCPEpiC	choroid plexus:	n/a
21	chr3:53880366-53880416	HPAEpiC	pulmonary alveolar:	n/a
22	chr3:53880376-53880426	NH-A	brain:	n/a
23	chr3:53877436-53877486	LNCaP	prostate:	n/a
24	chr3:53880366-53880416	AoSMC	blood vessel:	n/a
25	chr3:53880872-53880922	AoSMC	blood vessel:	n/a
26	chr3:53880853-53880903	HRCEpiC	kidney:	n/a
27	chr3:53880717-53880767	AG09319	gingival:	n/a
28	chr3:53880378-53880428	NH-A	brain:	n/a
29	chr3:53878642-53878692	HRCEpiC	kidney:	n/a
30	chr3:53880775-53880825	AoSMC	blood vessel:	n/a
31	chr3:53880717-53880767	HPAEpiC	pulmonary alveolar:	n/a
32	chr3:53880378-53880428	U87	brain:	n/a
33	chr3:53878642-53878692	SAEC	small airway:	n/a
34	chr3:53879737-53879787	ovcar-3	ovarian:	n/a
35	chr3:53877436-53877486	PrEC	prostate:	n/a
36	chr3:53880872-53880922	HEK293	kidney:	embryo
37	chr3:53880378-53880428	HCPEpiC	choroid plexus:	n/a
38	chr3:53880775-53880825	U87	brain:	n/a
39	chr3:53880717-53880767	HCT-116	colon:	n/a
40	chr3:53880366-53880416	HIPEpiC	eye:	n/a
41	chr3:53880376-53880426	SAEC	small airway:	n/a
42	chr3:53880376-53880426	HNPCEpiC	eye:	n/a
43	chr3:53877436-53877486	AoSMC	blood vessel:	n/a
44	chr3:53877436-53877486	MCF10A-Er-Src	breast:	n/a
45	chr3:53880376-53880426	AG10803	skin:	n/a
46	chr3:53877436-53877486	A549	lung:	n/a
47	chr3:53877436-53877486	Hela-S3	cervix:	n/a
48	chr3:53877436-53877486	BE2_C	brain:	n/a
49	chr3:53880366-53880416	RPTEC	kidney:	n/a
50	chr3:53877436-53877486	SK-N-SH	brain:	n/a

(count:16 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr3:53882268..53884684-chr3:53906455..53909246,2	MCF-7	breast:
2	chr3:28282969..28283575-chr3:53879378..53880306,2	Hela-S3	cervix:
3	chr3:53866125..53868465-chr3:53874787..53877078,2	K562	blood:
4	chr3:53880225..53881825-chr3:53914407..53917091,2	MCF-7	breast:
5	chr3:53874777..53878635-chr3:53878874..53882397,7	MCF-7	breast:
6	chr3:53879945..53880611-chr6:30028486..30029019,2	Hela-S3	cervix:
7	chr3:53874952..53876547-chr3:53878295..53881175,2	K562	blood:
8	chr3:53865722..53867529-chr3:53870209..53872321,2	MCF-7	breast:
9	chr3:53866511..53869792-chr3:53878002..53881981,4	MCF-7	breast:
10	chr3:53526182..53528875-chr3:53879796..53881358,2	MCF-7	breast:
11	chr3:53871494..53874275-chr3:53875042..53877358,2	MCF-7	breast:
12	chr3:53882366..53883990-chr3:53889340..53891284,2	MCF-7	breast:
13	chr3:53866125..53868465-chr3:53874787..53877078,2	K562	blood:
14	chr3:53865722..53867529-chr3:53870209..53872321,2	MCF-7	breast:
15	chr3:53871494..53874275-chr3:53875042..53877358,2	MCF-7	breast:
16	chr3:53288526..53291244-chr3:53879304..53881119,2	MCF-7	breast:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ACTR8-3	chr3:53868060-53870643	ncRnaDb_ncrna_FR081823_1

No data

Variant related genes	Relation type
CHDH	TF binding region
IL17RB	TF binding region
CHDH	CpG island
IL17RB	CpG island
ENSG00000204623	chromatin interactions
ENSG00000157388	chromatin interactions
ENSG00000016391	chromatin interactions
ENSG00000222888	chromatin interactions
ENSG00000163931	chromatin interactions
ENSG00000187118	chromatin interactions
ENSG00000113812	chromatin interactions
ENSG00000056736	chromatin interactions

Extended variants
information (count: 665 )
Associated
traits (count: 92 )

Variant overlapped rSNPs/rCNVs (count:665 , 50 per page) page: 1 2 3 4 5 6 7 ... 14

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs6782485	chr3:53865731-53865732	Weak transcription Genic enhancers Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
2	rs62250935	chr3:53865787-53865788	Weak transcription Genic enhancers Strong transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
3	rs369646985	chr3:53865808-53865809	Weak transcription Genic enhancers Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs113004426	chr3:53865809-53865810	Weak transcription Genic enhancers Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs186378904	chr3:53865816-53865817	Weak transcription Genic enhancers Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs145696571	chr3:53865897-53865898	Weak transcription Genic enhancers Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs569419271	chr3:53865930-53865931	Weak transcription Genic enhancers Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs113683840	chr3:53865980-53865981	Weak transcription Genic enhancers Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs377725544	chr3:53866042-53866043	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs371217874	chr3:53866132-53866133	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs541856969	chr3:53866221-53866222	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs114842661	chr3:53866239-53866240	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs530142248	chr3:53866286-53866287	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs542396463	chr3:53866325-53866326	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs4687748	chr3:53866330-53866331	Weak transcription Strong transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
16	rs564763348	chr3:53866341-53866342	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs376919048	chr3:53866354-53866355	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs2196663	chr3:53866355-53866356	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs533284356	chr3:53866358-53866359	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs528176731	chr3:53866359-53866360	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs147620636	chr3:53866374-53866375	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs377303645	chr3:53866382-53866383	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs568060165	chr3:53866383-53866384	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs537390292	chr3:53866436-53866437	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs191643873	chr3:53866467-53866468	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs142119084	chr3:53866494-53866495	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
27	rs539272152	chr3:53866495-53866496	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
28	rs552734834	chr3:53866508-53866509	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
29	rs146179219	chr3:53866514-53866515	Weak transcription Strong transcription Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
30	rs541918713	chr3:53866515-53866516	Weak transcription Strong transcription Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
31	rs555385053	chr3:53866528-53866529	Weak transcription Strong transcription Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
32	rs138971402	chr3:53866537-53866538	Weak transcription Strong transcription Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
33	rs60127403	chr3:53866541-53866542	Weak transcription Strong transcription Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
34	rs564644322	chr3:53866545-53866546	Weak transcription Strong transcription Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
35	rs183527555	chr3:53866546-53866547	Weak transcription Strong transcription Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
36	rs200210995	chr3:53866580-53866581	Weak transcription Strong transcription Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
37	rs150304552	chr3:53866590-53866591	Weak transcription Strong transcription Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
38	rs560646221	chr3:53866593-53866594	Weak transcription Strong transcription Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
39	rs74814876	chr3:53866597-53866598	Weak transcription Strong transcription Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
40	rs565647501	chr3:53866688-53866689	Weak transcription Strong transcription Genic enhancers Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
41	rs373962404	chr3:53866802-53866803	Weak transcription Strong transcription Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
42	rs561725340	chr3:53866848-53866849	Weak transcription Strong transcription Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
43	rs534559923	chr3:53866953-53866954	Weak transcription Strong transcription Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
44	rs187247408	chr3:53867010-53867011	Weak transcription Strong transcription Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
45	rs376394040	chr3:53867066-53867067	Weak transcription Strong transcription Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
46	rs191175799	chr3:53867081-53867082	Weak transcription Strong transcription Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
47	rs539698401	chr3:53867139-53867140	Weak transcription Strong transcription Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
48	rs557553171	chr3:53867181-53867182	Weak transcription Strong transcription Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
49	rs182197483	chr3:53867192-53867193	Weak transcription Strong transcription Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
50	rs566323205	chr3:53867257-53867258	Weak transcription Strong transcription Enhancers Genic enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:92)

Disease	PMID	Source
Acute myeloid leukemia	20729466	CNVD
Urothelial carcinoma	18382360	CNVD
Melanoma	18172304	CNVD
Cervical cancer	21062161	CNVD
Hirschsprung''s Disease	21712996	CNVD
Glioblastoma multiforme	21080181	CNVD
head and neck squamous cell carcinoma	17671120	CNVD
Insulin resistance	16721378	CNVD
Neuroblastoma	18664255	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Multiple myeloma	17077331	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Ewing''s sarcoma	21437220	CNVD
Neuroblastoma	21484798	CNVD
Non-small cell lung cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Oral cancer	19627613	CNVD
Renal cell carcinoma	19461508	CNVD
Epithelial cancer	22065749	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Acute myeloid leukemia	16864856	CNVD
Liposarcoma	21253554	CNVD
Basal cell lymphoma	21115979	CNVD
Endometrial cancer	22040021	CNVD
Pancreatic endocrine tumor	20981439	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	17387387	CNVD
Oral cancer	21386901	CNVD
Cutaneous squamous cell carcinomas	19131950	CNVD
Medulloblastoma	21979893	CNVD
Basal cell lymphoma	17053054	CNVD
Esophageal cancer	21851588	CNVD
Uveal melanoma	21693616	CNVD
Retinoblastoma	21504564	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Renal cell carcinoma	21668985	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Lung cancer	18438408	CNVD
Intellectual disability	22102821	CNVD
Breast cancer	17603634	CNVD
Esophageal cancer	20955586	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Myofibroblastic sarcoma	19369631	CNVD
Breast cancer	17133270	CNVD
Uveal melanoma	20484589	CNVD
Autism	22495311	CNVD
Melanoma	20688739	CNVD
Acute myeloid leukemia	21251322	CNVD
Hepatocellular carcinoma	16750200	CNVD
Cancer	21183584	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Bipolar disorder	20877625	CNVD
Bipolar disorder	21956041	CNVD
Bipolar disorder	22241247	CNVD
Biliary cancer	18923514	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Malignant mesothelioma	18160781	CNVD
Pleural malignant mesothelioma	18160781	CNVD
Breast cancer	16397240	CNVD
Breast cancer	22032731	CNVD
Non-small cell lung cancer	20864512	CNVD
Colorectal cancer	16912164	CNVD
Non-small cell lung cancer	19010865	CNVD
Colorectal cancer	16272173	CNVD
Non-muscle invasive bladder neoplasm	19445696	CNVD
Breast cancer	21785460	CNVD
Neuroblastoma	17327916	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Septo-optic dysplasia	21572526	CNVD
Biliary cancer	19435499	CNVD
Squamous cell cancer	20885788	CNVD
Chronic lymphocytic leukemia	20421269	CNVD
Myelofibrosis	22110671	CNVD
Urothelial cell carcinoma	18451213	CNVD
Ventriculomegaly	21325761	CNVD
Breast cancer	16608533	CNVD
Prostate cancer	21965145	CNVD
Cancer	21129771	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
Lung cancer	16618734	CNVD
Neuroblastoma	19686582	CNVD
Renal cell carcinoma	18765545	CNVD
Adrenocortical carcinoma	18281524	CNVD
small cell lung cancer	20016488	CNVD
Pancreatic ductal adenocarcinoma	19077451	CNVD
Breast cancer	21509527	CNVD
Pancreatic cancer	17952125	CNVD
Breast cancer	22522925	CNVD

Chromatin state (count:745 , 50 per page) page: 1 2 3 4 5 6 7 ... 15

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:53839600-53876600	Weak transcription	HUES64 Cell Line	embryonic stem cell
2	chr3:53846600-53879800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr3:53849000-53866800	Weak transcription	Stomach Mucosa	stomach
4	chr3:53849600-53875400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr3:53852400-53878200	Weak transcription	Hela-S3	cervix
6	chr3:53853200-53867400	Weak transcription	Lung	lung
7	chr3:53853400-53877200	Weak transcription	Colonic Mucosa	Colon
8	chr3:53853600-53866800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr3:53853800-53879000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr3:53854000-53879400	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr3:53854200-53871600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr3:53854200-53877400	Weak transcription	Esophagus	oesophagus
13	chr3:53854400-53873000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
14	chr3:53854400-53876400	Weak transcription	Sigmoid Colon	Sigmoid Colon
15	chr3:53854600-53866600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr3:53854600-53867400	Weak transcription	Spleen	Spleen
17	chr3:53854600-53873200	Weak transcription	HUES48 Cell Line	embryonic stem cell
18	chr3:53856200-53866000	Weak transcription	Brain Cingulate Gyrus	brain
19	chr3:53856800-53879200	Weak transcription	Ovary	ovary
20	chr3:53857400-53876400	Weak transcription	Rectal Mucosa Donor 29	rectum
21	chr3:53857400-53876800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
22	chr3:53858200-53876400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
23	chr3:53858400-53873200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr3:53858600-53867200	Weak transcription	Gastric	stomach
25	chr3:53858600-53867400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
26	chr3:53858600-53872200	Weak transcription	H1 Cell Line	embryonic stem cell
27	chr3:53858600-53876400	Weak transcription	HUES6 Cell Line	embryonic stem cell
28	chr3:53858800-53866000	Genic enhancers	HepG2	liver
29	chr3:53858800-53866600	Weak transcription	Cortex derived primary cultured neurospheres	brain
30	chr3:53859000-53876400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
31	chr3:53859400-53868000	Weak transcription	Fetal Intestine Large	intestine
32	chr3:53861000-53876400	Weak transcription	Pancreatic Islets	Pancreatic Islet
33	chr3:53861400-53875400	Weak transcription	GM12878-XiMat	blood
34	chr3:53861800-53870000	Enhancers	Primary neutrophils fromperipheralblood	blood
35	chr3:53862800-53865800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
36	chr3:53863000-53866600	Weak transcription	Brain Inferior Temporal Lobe	brain
37	chr3:53863400-53866600	Weak transcription	Brain Substantia Nigra	brain
38	chr3:53863400-53866800	Weak transcription	Brain Anterior Caudate	brain
39	chr3:53863800-53867400	Weak transcription	Duodenum Mucosa	Duodenum
40	chr3:53864000-53865800	Weak transcription	Rectal Mucosa Donor 31	rectum
41	chr3:53864800-53869400	Strong transcription	Liver	Liver
42	chr3:53864800-53874400	Strong transcription	Fetal Intestine Small	intestine
43	chr3:53865000-53866000	Genic enhancers	ES-UCSF4 Cell Line	embryonic stem cell
44	chr3:53865400-53866000	Enhancers	Brain Hippocampus Middle	brain
45	chr3:53865600-53865800	Enhancers	Primary B cells from cord blood	blood
46	chr3:53865600-53867200	Weak transcription	Pancreas	Pancrea
47	chr3:53865600-53867800	Weak transcription	Fetal Stomach	stomach
48	chr3:53865600-53879800	Weak transcription	Aorta	Aorta
49	chr3:53865800-53866200	Enhancers	Rectal Mucosa Donor 31	rectum
50	chr3:53865800-53866600	Weak transcription	Breast Myoepithelial Primary Cells	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links