Variant report

Variant	nsv877124
Chromosome Location	chr3:86760197-86796492
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:0)
LncRNA
region (count:24)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:24 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-CHMP2B-2	chr3:86766576-86766677	XLOC_002725
2	lnc-CHMP2B-2	chr3:86769945-86770054	XLOC_002725
3	lnc-CHMP2B-2	chr3:86768368-86768678	XLOC_002725
4	lnc-CHMP2B-2	chr3:86760800-86760938	XLOC_002725
5	lnc-CHMP2B-2	chr3:86786328-86786371	NONHSAT090678
6	lnc-CHMP2B-2	chr3:86771630-86771837	NONHSAT090674
7	lnc-CHMP2B-2	chr3:86766575-86766677	NONHSAT090674
8	lnc-CHMP2B-2	chr3:86771631-86771837	XLOC_002725
9	lnc-CHMP2B-2	chr3:86766576-86766677	NONHSAT090678
10	lnc-CHMP2B-2	chr3:86766576-86766677	XLOC_002725
11	lnc-CHMP2B-2	chr3:86768367-86769064	NONHSAT090674
12	lnc-CHMP2B-4	chr3:86790896-86791074	l_2406_chr3:86790895-86851827_testes
13	lnc-CHMP2B-2	chr3:86768368-86768498	XLOC_002725
14	lnc-CHMP2B-2	chr3:86766576-86766677	XLOC_002725
15	lnc-CHMP2B-2	chr3:86771631-86771837	XLOC_002725
16	lnc-CHMP2B-2	chr3:86760800-86760938	XLOC_002725
17	lnc-CHMP2B-2	chr3:86769941-86770054	XLOC_002725
18	lnc-CHMP2B-2	chr3:86769941-86770054	XLOC_002725
19	lnc-CHMP2B-2	chr3:86760799-86760938	NONHSAT090674
20	lnc-CHMP2B-2	chr3:86769940-86770054	NONHSAT090674
21	lnc-CHMP2B-2	chr3:86766576-86766677	XLOC_002725
22	lnc-CHMP2B-2	chr3:86771631-86771837	XLOC_002725
23	lnc-CHMP2B-2	chr3:86768368-86768498	XLOC_002725
24	lnc-CHMP2B-2	chr3:86768368-86769064	XLOC_002725

No data

Variant related genes	Relation type
C15orf57	miRNA target sites
LCLAT1	miRNA target sites
PLOD3	miRNA target sites
MRPL42	miRNA target sites
AHR	miRNA target sites
POLA1	miRNA target sites
PTEN	miRNA target sites
ZFYVE27	miRNA target sites
C14orf178	miRNA target sites

Extended variants
information (count: 332 )
Associated
traits (count: 74 )

Variant overlapped rSNPs/rCNVs (count:332 , 50 per page) page: 1 2 3 4 5 6 7

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs568512498	chr3:86760818-86760819	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
2	rs536591804	chr3:86760868-86760869	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
3	rs75255111	chr3:86760907-86760908	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
4	rs573389484	chr3:86760929-86760930	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
5	rs115367542	chr3:86763610-86763611	Active TSS	n/a	n/a	Overlapped CNVs	n/a
6	rs78448794	chr3:86763680-86763681	Active TSS	n/a	n/a	Overlapped CNVs	n/a
7	rs557230202	chr3:86763696-86763697	Active TSS	n/a	n/a	Overlapped CNVs	n/a
8	rs199826667	chr3:86763709-86763710	Active TSS	n/a	n/a	Overlapped CNVs	n/a
9	rs200361469	chr3:86763710-86763711	Active TSS	n/a	n/a	Overlapped CNVs	n/a
10	rs553667032	chr3:86763714-86763715	Active TSS	n/a	n/a	Overlapped CNVs	n/a
11	rs572131495	chr3:86763719-86763720	Active TSS	n/a	n/a	Overlapped CNVs	n/a
12	rs76249653	chr3:86763724-86763725	Active TSS	n/a	n/a	Overlapped CNVs	n/a
13	rs545909483	chr3:86763727-86763728	Active TSS	n/a	n/a	Overlapped CNVs	n/a
14	rs143249931	chr3:86763728-86763729	Active TSS	n/a	n/a	Overlapped CNVs	n/a
15	rs374920695	chr3:86763752-86763753	Active TSS	n/a	n/a	Overlapped CNVs	n/a
16	rs573953118	chr3:86763758-86763759	Active TSS	n/a	n/a	Overlapped CNVs	n/a
17	rs576068708	chr3:86763771-86763772	Active TSS	n/a	n/a	Overlapped CNVs	n/a
18	rs544133280	chr3:86763807-86763808	Active TSS	n/a	n/a	Overlapped CNVs	n/a
19	rs151199198	chr3:86763815-86763816	Active TSS	n/a	n/a	Overlapped CNVs	n/a
20	rs62256906	chr3:86763829-86763830	Active TSS	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
21	rs548004874	chr3:86763833-86763834	Active TSS	n/a	n/a	Overlapped CNVs	n/a
22	rs55711545	chr3:86763841-86763842	Active TSS	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
23	rs528704497	chr3:86763862-86763863	Active TSS	n/a	n/a	Overlapped CNVs	n/a
24	rs533290606	chr3:86763869-86763870	Active TSS	n/a	n/a	Overlapped CNVs	n/a
25	rs371143796	chr3:86763874-86763875	Active TSS	n/a	n/a	Overlapped CNVs	n/a
26	rs551420179	chr3:86763914-86763915	Active TSS	n/a	n/a	Overlapped CNVs	n/a
27	rs569717836	chr3:86763959-86763960	Active TSS	n/a	n/a	Overlapped CNVs	n/a
28	rs545467639	chr3:86763970-86763971	Active TSS	n/a	n/a	Overlapped CNVs	n/a
29	rs565275851	chr3:86763987-86763988	Active TSS	n/a	n/a	Overlapped CNVs	n/a
30	rs568375887	chr3:86763989-86763990	Active TSS	n/a	n/a	Overlapped CNVs	n/a
31	rs530930358	chr3:86764024-86764025	Active TSS	n/a	n/a	Overlapped CNVs	n/a
32	rs79904222	chr3:86764057-86764058	Active TSS	n/a	n/a	Overlapped CNVs	n/a
33	rs77111070	chr3:86764058-86764059	Active TSS	n/a	n/a	Overlapped CNVs	n/a
34	rs78890560	chr3:86764059-86764060	Active TSS	n/a	n/a	Overlapped CNVs	n/a
35	rs75875053	chr3:86764061-86764062	Active TSS	n/a	n/a	Overlapped CNVs	n/a
36	rs536755565	chr3:86764065-86764066	Active TSS	n/a	n/a	Overlapped CNVs	n/a
37	rs553977783	chr3:86764100-86764101	Active TSS	n/a	n/a	Overlapped CNVs	n/a
38	rs550945864	chr3:86764130-86764131	Active TSS	n/a	n/a	Overlapped CNVs	n/a
39	rs62256908	chr3:86764134-86764135	Active TSS	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
40	rs62256909	chr3:86764141-86764142	Active TSS	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
41	rs375370545	chr3:86764167-86764168	Active TSS	n/a	n/a	Overlapped CNVs	n/a
42	rs545341911	chr3:86766589-86766590	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
43	rs113841050	chr3:86766660-86766661	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
44	rs563538419	chr3:86766662-86766663	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
45	rs530816361	chr3:86766667-86766668	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
46	rs142175139	chr3:86766676-86766677	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
47	rs564672722	chr3:86768378-86768379	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
48	rs187498755	chr3:86768399-86768400	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
49	rs374621515	chr3:86768420-86768421	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
50	rs531912961	chr3:86768513-86768514	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a

Variant related diseases (count:74)

Disease	PMID	Source
Glioblastoma multiforme	21080181	CNVD
Melanoma	18172304	CNVD
head and neck squamous cell carcinoma	17671120	CNVD
Insulin resistance	16721378	CNVD
Neuroblastoma	18664255	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Multiple myeloma	17077331	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Ewing''s sarcoma	21437220	CNVD
Neuroblastoma	21484798	CNVD
Non-small cell lung cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Oral cancer	19627613	CNVD
Renal cell carcinoma	19461508	CNVD
Epithelial cancer	22065749	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Acute myeloid leukemia	16864856	CNVD
Liposarcoma	21253554	CNVD
Basal cell lymphoma	21115979	CNVD
Endometrial cancer	22040021	CNVD
Pancreatic endocrine tumor	20981439	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	17387387	CNVD
Oral cancer	21386901	CNVD
Cutaneous squamous cell carcinomas	19131950	CNVD
Acute myeloid leukemia	20729466	CNVD
Medulloblastoma	21979893	CNVD
Basal cell lymphoma	17053054	CNVD
Esophageal cancer	21851588	CNVD
Uveal melanoma	21693616	CNVD
Retinoblastoma	21504564	CNVD
Renal cell carcinoma	21668985	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Intellectual disability	22102821	CNVD
Breast cancer	17603634	CNVD
Esophageal cancer	20955586	CNVD
Uveal melanoma	20484589	CNVD
Autism	22495311	CNVD
Lung cancer	18438408	CNVD
Hirschsprung''s Disease	21712996	CNVD
Hepatocellular carcinoma	16750200	CNVD
Cancer	21183584	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Bipolar disorder	20877625	CNVD
Bipolar disorder	21956041	CNVD
Bipolar disorder	22241247	CNVD
Biliary cancer	18923514	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Prostate cancer	21965145	CNVD
Cancer	21129771	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
Cervical cancer	21062161	CNVD
Squamous cell cancer	20885788	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Cancer	20164919	CNVD
Metanephric adenoma	20802469	CNVD
Bipolar disorder	18458673	CNVD
Breast cancer	22032731	CNVD
Wilms tumour	21544195	CNVD
Colorectal cancer	16272173	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
Soft tissue tumor	16732325	CNVD
small cell lung cancer	20016488	CNVD
Neurodevelopmental disorder	22521361	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Mental retardation	17124404	CNVD
Esophageal squamous carcinoma	17470683	CNVD
Myelofibrosis	22110671	CNVD
Malignant fibrous histiocytomas	21085701	CNVD
craniofacial dysmorphism	21918468	CNVD
Cancer	20164920	CNVD

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:86763600-86764200	Active TSS	ES-I3 Cell Line	embryonic stem cell
2	chr3:86780600-86781000	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr3:86781000-86782400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr3:86782400-86782600	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr3:86782600-86782800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr3:86792200-86792600	Enhancers	Brain Germinal Matrix	brain
7	chr3:86792600-86793400	Weak transcription	Brain Germinal Matrix	brain
8	chr3:86792800-86794600	Enhancers	Pancreatic Islets	Pancreatic Islet
9	chr3:86793400-86794400	Enhancers	Brain Germinal Matrix	brain

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