Variant report

Variant	nsv877241
Chromosome Location	chr3:103090241-103151043
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ZPLD1-8	chr3:103142393-103142559	l_2420_NR_026934

Extended variants
information (count: 399 )
Associated
traits (count: 57 )

Variant overlapped rSNPs/rCNVs (count:399 , 50 per page) page: 1 2 3 4 5 6 7 8

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs7653853	chr3:103090241-103090242	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
2	rs386664047	chr3:103090251-103090252	Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs7639969	chr3:103090262-103090263	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
4	rs146704326	chr3:103090263-103090264	Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs370438493	chr3:103090326-103090327	Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs139361320	chr3:103090394-103090395	Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs563536737	chr3:103090457-103090458	Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs530614445	chr3:103090507-103090508	Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs545719498	chr3:103090522-103090523	Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs141807853	chr3:103090544-103090545	Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs532384888	chr3:103090590-103090591	Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs114834057	chr3:103090613-103090614	Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs553496357	chr3:103090658-103090659	Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs559603522	chr3:103090667-103090668	Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs552548905	chr3:103090699-103090700	Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs187320315	chr3:103090722-103090723	Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs568469226	chr3:103090734-103090735	Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs548392181	chr3:103090741-103090742	Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs530289497	chr3:103090767-103090768	Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs9878942	chr3:103090774-103090775	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
21	rs542971941	chr3:103090826-103090827	Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs192212958	chr3:103090881-103090882	Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs563075914	chr3:103090898-103090899	Enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs552921802	chr3:103090918-103090919	Enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs181875242	chr3:103090927-103090928	Enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs534606833	chr3:103090929-103090930	Enhancers	n/a	n/a	Overlapped CNVs	n/a
27	rs552889865	chr3:103090932-103090933	Enhancers	n/a	n/a	Overlapped CNVs	n/a
28	rs528352090	chr3:103090944-103090945	Enhancers	n/a	n/a	Overlapped CNVs	n/a
29	rs116555066	chr3:103090962-103090963	Enhancers	n/a	n/a	Overlapped CNVs	n/a
30	rs75418607	chr3:103090976-103090977	Enhancers	n/a	n/a	Overlapped CNVs	n/a
31	rs545509427	chr3:103090979-103090980	Enhancers	n/a	n/a	Overlapped CNVs	n/a
32	rs556757311	chr3:103090987-103090988	Enhancers	n/a	n/a	Overlapped CNVs	n/a
33	rs575129057	chr3:103090996-103090997	Enhancers	n/a	n/a	Overlapped CNVs	n/a
34	rs150482467	chr3:103091003-103091004	Enhancers	n/a	n/a	Overlapped CNVs	n/a
35	rs73849676	chr3:103091004-103091005	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
36	rs374490324	chr3:103091006-103091007	Enhancers	n/a	n/a	Overlapped CNVs	n/a
37	rs572761093	chr3:103091009-103091010	Enhancers	n/a	n/a	Overlapped CNVs	n/a
38	rs79266589	chr3:103091059-103091060	Enhancers	n/a	n/a	Overlapped CNVs	n/a
39	rs78760510	chr3:103091071-103091072	Enhancers	n/a	n/a	Overlapped CNVs	n/a
40	rs527790979	chr3:103091082-103091083	Enhancers	n/a	n/a	Overlapped CNVs	n/a
41	rs559746333	chr3:103091092-103091093	Enhancers	n/a	n/a	Overlapped CNVs	n/a
42	rs138412147	chr3:103091108-103091109	Enhancers	n/a	n/a	Overlapped CNVs	n/a
43	rs148366330	chr3:103091128-103091129	Enhancers	n/a	n/a	Overlapped CNVs	n/a
44	rs548700348	chr3:103091151-103091152	Enhancers	n/a	n/a	Overlapped CNVs	n/a
45	rs529015421	chr3:103091193-103091194	Enhancers	n/a	n/a	Overlapped CNVs	n/a
46	rs185845064	chr3:103091205-103091206	Enhancers	n/a	n/a	Overlapped CNVs	n/a
47	rs531152961	chr3:103091236-103091237	Enhancers	n/a	n/a	Overlapped CNVs	n/a
48	rs552760352	chr3:103091237-103091238	Enhancers	n/a	n/a	Overlapped CNVs	n/a
49	rs149240628	chr3:103091242-103091243	Enhancers	n/a	n/a	Overlapped CNVs	n/a
50	rs376257629	chr3:103091258-103091259	Enhancers	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:57)

Disease	PMID	Source
Medulloblastoma	21979893	CNVD
Basal cell lymphoma	17053054	CNVD
Esophageal cancer	21851588	CNVD
Uveal melanoma	21693616	CNVD
Glioblastoma multiforme	21080181	CNVD
Retinoblastoma	21504564	CNVD
Renal cell carcinoma	21668985	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Intellectual disability	22102821	CNVD
Breast cancer	17603634	CNVD
Uveal melanoma	20484589	CNVD
Autism	22495311	CNVD
Lung cancer	18438408	CNVD
Hirschsprung''s Disease	21712996	CNVD
Hepatocellular carcinoma	16750200	CNVD
Cancer	21183584	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Bipolar disorder	20877625	CNVD
Bipolar disorder	21956041	CNVD
Bipolar disorder	22241247	CNVD
Biliary cancer	18923514	CNVD
Prostate cancer	21965145	CNVD
Cancer	21129771	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
Cervical cancer	21062161	CNVD
Squamous cell cancer	20885788	CNVD
Melanoma	18172304	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Bipolar disorder	18458673	CNVD
Breast cancer	22032731	CNVD
Neurodevelopmental disorder	22521361	CNVD
head and neck squamous cell carcinoma	17671120	CNVD
Breast cancer	16461572	CNVD
Neuroblastoma	17533364	CNVD
microdeletion syndrome	22180640	CNVD
Cervical Cancer	21857958	CNVD
Melanoma	21693616	CNVD
Lung cancer	21426551	CNVD
Cancer	21637783	CNVD
Cervical cancer	21063398	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Liposarcoma	21253554	CNVD
Oral cancer	21386901	CNVD
Renal cell carcinoma	19461508	CNVD
Cancer	22065749	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
small cell lung cancer	20016488	CNVD
Ductal carcinoma	22052326	CNVD
Breast cancer	16608533	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Myelofibrosis	22110671	CNVD
Renal cell carcinoma	18765545	CNVD
Breast cancer	21364760	CNVD
Breast cancer	22522925	CNVD

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:103088800-103091000	Enhancers	Fetal Brain Male	brain
2	chr3:103089800-103091400	Enhancers	Fetal Brain Female	brain
3	chr3:103104800-103105400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr3:103105000-103105600	Enhancers	Fetal Brain Male	brain
5	chr3:103106400-103107400	Enhancers	Colon Smooth Muscle	Colon
6	chr3:103106800-103107600	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr3:103106800-103107800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr3:103107000-103107400	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr3:103107000-103107600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr3:103107000-103107600	Enhancers	iPS-18 Cell Line	embryonic stem cell
11	chr3:103107200-103107400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr3:103107400-103107600	Enhancers	Fetal Brain Male	brain
13	chr3:103107800-103112200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr3:103112200-103113200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr3:103112600-103113200	Enhancers	NH-A	brain
16	chr3:103121200-103122400	Enhancers	iPS-18 Cell Line	embryonic stem cell
17	chr3:103121800-103122600	Enhancers	iPS-20b Cell Line	embryonic stem cell
18	chr3:103128800-103129200	Bivalent Enhancer	ES-WA7 Cell Line	embryonic stem cell

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