Variant report

Variant	nsv877263
Chromosome Location	chr3:103558678-103700909
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:3)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr3:103663959..103665790-chr3:103668581..103671355,2	K562	blood:
2	chr12:57117722..57120174-chr3:103567759..103569281,2	MCF-7	breast:
3	chr3:103575079..103576806-chr3:103584240..103586997,2	K562	blood:
4	chr3:103672576..103675146-chr3:103946117..103948469,2	K562	blood:
5	chr3:103596754..103597389-chr3:103609289..103610010,2	MCF-7	breast:
6	chr16:12926733..12929305-chr3:103655550..103657071,2	MCF-7	breast:
7	chr3:103663959..103665790-chr3:103668581..103671355,2	K562	blood:
8	chr3:103575079..103576806-chr3:103584240..103586997,2	K562	blood:
9	chr3:103596754..103597389-chr3:103609289..103610010,2	MCF-7	breast:

(count:3 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ALCAM-3	chr3:103689452-103689595	NONHSAT090944
2	lnc-ALCAM-3	chr3:103646038-103646199	NONHSAT090944
3	lnc-ALCAM-3	chr3:103646039-103646199	XLOC_002744

No data

Variant related genes	Relation type
ENSG00000196531	chromatin interactions

Extended variants
information (count: 1320 )
Associated
traits (count: 62 )

Variant overlapped rSNPs/rCNVs (count:1320 , 50 per page) page: 1 2 3 4 5 6 7 ... 27

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs189164715	chr3:103564003-103564004	Enhancers	n/a	n/a	Overlapped CNVs	n/a
2	rs112591376	chr3:103564008-103564009	Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs534234143	chr3:103564164-103564165	Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs555763994	chr3:103564179-103564180	Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs574434494	chr3:103564227-103564228	Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs2608481	chr3:103564231-103564232	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
7	rs182495971	chr3:103564280-103564281	Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs377696048	chr3:103564360-103564361	Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs74327445	chr3:103564384-103564385	Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs113442974	chr3:103564385-103564386	Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs111968341	chr3:103564386-103564387	Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs113093739	chr3:103564388-103564389	Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs71103787	chr3:103564392-103564393	Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs4856062	chr3:103564398-103564399	Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs76069865	chr3:103564658-103564659	Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs74820423	chr3:103564692-103564693	Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs531510141	chr3:103564703-103564704	Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs538567998	chr3:103564716-103564717	Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs60929958	chr3:103564724-103564725	Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs571130726	chr3:103564767-103564768	Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs74785620	chr3:103564778-103564779	Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs566511523	chr3:103564812-103564813	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs60567350	chr3:103564823-103564824	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs67862428	chr3:103564824-103564825	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs185492560	chr3:103564858-103564859	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs189193605	chr3:103564878-103564879	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs181606820	chr3:103564888-103564889	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs6788813	chr3:103564899-103564900	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs375172825	chr3:103564926-103564927	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs555773931	chr3:103564946-103564947	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs567918963	chr3:103564954-103564955	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs140504454	chr3:103564959-103564960	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs185671191	chr3:103564987-103564988	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs143737102	chr3:103564999-103565000	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs78265776	chr3:103565008-103565009	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs563757721	chr3:103565012-103565013	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs545609920	chr3:103565028-103565029	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs79911258	chr3:103565064-103565065	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs578242102	chr3:103565073-103565074	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs573427676	chr3:103565077-103565078	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs190130812	chr3:103565106-103565107	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs181157851	chr3:103565185-103565186	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs560553712	chr3:103565266-103565267	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs148108280	chr3:103565273-103565274	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs543328089	chr3:103565277-103565278	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs560797097	chr3:103565300-103565301	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs527281035	chr3:103565309-103565310	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs564870131	chr3:103565385-103565386	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs532154555	chr3:103565460-103565461	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs186264342	chr3:103565494-103565495	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:62)

Disease	PMID	Source
Medulloblastoma	21979893	CNVD
Basal cell lymphoma	17053054	CNVD
Esophageal cancer	21851588	CNVD
Uveal melanoma	21693616	CNVD
Glioblastoma multiforme	21080181	CNVD
Retinoblastoma	21504564	CNVD
Renal cell carcinoma	21668985	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Intellectual disability	22102821	CNVD
Breast cancer	17603634	CNVD
Uveal melanoma	20484589	CNVD
Autism	22495311	CNVD
Lung cancer	18438408	CNVD
Hirschsprung''s Disease	21712996	CNVD
Hepatocellular carcinoma	16750200	CNVD
Cancer	21183584	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Bipolar disorder	20877625	CNVD
Bipolar disorder	21956041	CNVD
Bipolar disorder	22241247	CNVD
Biliary cancer	18923514	CNVD
Prostate cancer	21965145	CNVD
Cancer	21129771	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
Cervical cancer	21062161	CNVD
Squamous cell cancer	20885788	CNVD
Melanoma	18172304	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Bipolar disorder	18458673	CNVD
Breast cancer	22032731	CNVD
Neurodevelopmental disorder	22521361	CNVD
head and neck squamous cell carcinoma	17671120	CNVD
Breast cancer	16461572	CNVD
Neuroblastoma	17533364	CNVD
microdeletion syndrome	22180640	CNVD
Cervical Cancer	21857958	CNVD
Melanoma	21693616	CNVD
Lung cancer	21426551	CNVD
Cancer	21637783	CNVD
Cervical cancer	21063398	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Liposarcoma	21253554	CNVD
Oral cancer	21386901	CNVD
Renal cell carcinoma	19461508	CNVD
Cancer	22065749	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
small cell lung cancer	20016488	CNVD
Ductal carcinoma	22052326	CNVD
Breast cancer	16608533	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Myelofibrosis	22110671	CNVD
Renal cell carcinoma	18765545	CNVD
Breast cancer	21364760	CNVD
Breast cancer	22522925	CNVD
Developmental delay	22180640	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD
Stenocardia	21860640	CNVD
Vasospasm	21860640	CNVD
Non-syndromic sensorineural hearing loss	18451855	CNVD

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:103564000-103564400	Enhancers	Pancreas	Pancrea
2	chr3:103564600-103564800	Enhancers	HepG2	liver
3	chr3:103564800-103565600	Weak transcription	HepG2	liver
4	chr3:103565600-103567600	Enhancers	HepG2	liver
5	chr3:103576800-103579400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr3:103577800-103578200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
7	chr3:103580200-103581200	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr3:103580400-103581200	Enhancers	H9 Cell Line	embryonic stem cell
9	chr3:103591400-103591800	Enhancers	Fetal Kidney	kidney
10	chr3:103591800-103592200	Weak transcription	Fetal Kidney	kidney
11	chr3:103592200-103592800	Enhancers	Fetal Kidney	kidney
12	chr3:103592800-103593400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr3:103604200-103604600	Active TSS	Stomach Smooth Muscle	stomach
14	chr3:103620400-103620600	Enhancers	Pancreas	Pancrea
15	chr3:103620600-103621600	Weak transcription	Pancreas	Pancrea
16	chr3:103621600-103621800	Enhancers	Pancreas	Pancrea
17	chr3:103625800-103626200	Enhancers	HepG2	liver
18	chr3:103637800-103638800	Enhancers	Liver	Liver
19	chr3:103665400-103665800	Enhancers	HepG2	liver
20	chr3:103665800-103666600	Flanking Active TSS	HepG2	liver
21	chr3:103666200-103666600	Enhancers	Cortex derived primary cultured neurospheres	brain
22	chr3:103672600-103673200	Enhancers	HepG2	liver
23	chr3:103672800-103673200	Enhancers	HUES48 Cell Line	embryonic stem cell
24	chr3:103673200-103679600	Weak transcription	HepG2	liver
25	chr3:103674600-103675000	Enhancers	Cortex derived primary cultured neurospheres	brain
26	chr3:103679600-103683600	Enhancers	HepG2	liver
27	chr3:103679800-103680200	Enhancers	Liver	Liver
28	chr3:103681200-103681800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr3:103681600-103682600	Enhancers	iPS-15b Cell Line	embryonic stem cell
30	chr3:103682600-103682800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
31	chr3:103684600-103684800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
32	chr3:103684800-103685000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
33	chr3:103685000-103687000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
34	chr3:103694200-103697200	Enhancers	Liver	Liver
35	chr3:103694600-103695400	Enhancers	HepG2	liver
36	chr3:103695400-103696200	Active TSS	HepG2	liver
37	chr3:103695800-103696800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr3:103696200-103696400	Flanking Active TSS	HepG2	liver
39	chr3:103696200-103697000	Enhancers	Fetal Intestine Small	intestine
40	chr3:103696200-103697200	Enhancers	Fetal Intestine Large	intestine
41	chr3:103696400-103698400	Enhancers	HepG2	liver

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links