Variant report

Variant	nsv877716
Chromosome Location	chr3:161817368-161847016
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 602 )
Associated
traits (count: 62 )

Variant overlapped rSNPs/rCNVs (count:602 , 50 per page) page: 1 2 3 4 5 6 7 ... 13

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs188708714	chr3:161821244-161821245	Enhancers	n/a	n/a	Overlapped CNVs	n/a
2	rs9856659	chr3:161821337-161821338	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
3	rs143823488	chr3:161821351-161821352	Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs576443098	chr3:161821388-161821389	Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs181594230	chr3:161821432-161821433	Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs2405278	chr3:161821456-161821457	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
7	rs373994075	chr3:161821466-161821467	Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs528367705	chr3:161821478-161821479	Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs2405279	chr3:161821515-161821516	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
10	rs1581057	chr3:161821524-161821525	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance disease
11	rs530569929	chr3:161821540-161821541	Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs551060695	chr3:161821551-161821552	Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs570948808	chr3:161821578-161821579	Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs151127260	chr3:161821590-161821591	Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs546993844	chr3:161821660-161821661	Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs374477194	chr3:161821665-161821666	Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs567204419	chr3:161821682-161821683	Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs536163129	chr3:161821687-161821688	Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs140702583	chr3:161821825-161821826	Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs538800573	chr3:161821852-161821853	Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs186206028	chr3:161821875-161821876	Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs538017867	chr3:161821956-161821957	Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs560391625	chr3:161821977-161821978	Enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs552198817	chr3:161821995-161821996	Enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs527629203	chr3:161822000-161822001	Enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs556680530	chr3:161822016-161822017	Enhancers	n/a	n/a	Overlapped CNVs	n/a
27	rs189406476	chr3:161822034-161822035	Enhancers	n/a	n/a	Overlapped CNVs	n/a
28	rs115060622	chr3:161822044-161822045	Enhancers	n/a	n/a	Overlapped CNVs	n/a
29	rs572720476	chr3:161822052-161822053	Enhancers	n/a	n/a	Overlapped CNVs	n/a
30	rs542107238	chr3:161822180-161822181	Enhancers	n/a	n/a	Overlapped CNVs	n/a
31	rs150094557	chr3:161822181-161822182	Enhancers	n/a	n/a	Overlapped CNVs	n/a
32	rs534013587	chr3:161827626-161827627	Enhancers	n/a	n/a	Overlapped CNVs	n/a
33	rs146671487	chr3:161827727-161827728	Enhancers	n/a	n/a	Overlapped CNVs	n/a
34	rs552850209	chr3:161827753-161827754	Enhancers	n/a	n/a	Overlapped CNVs	n/a
35	rs140268006	chr3:161827755-161827756	Enhancers	n/a	n/a	Overlapped CNVs	n/a
36	rs1397235	chr3:161827760-161827761	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
37	rs528230273	chr3:161827769-161827770	Enhancers	n/a	n/a	Overlapped CNVs	n/a
38	rs190314513	chr3:161827797-161827798	Enhancers	n/a	n/a	Overlapped CNVs	n/a
39	rs562036599	chr3:161827800-161827801	Enhancers	n/a	n/a	Overlapped CNVs	n/a
40	rs183710085	chr3:161827822-161827823	Enhancers	n/a	n/a	Overlapped CNVs	n/a
41	rs530954323	chr3:161827824-161827825	Enhancers	n/a	n/a	Overlapped CNVs	n/a
42	rs539830870	chr3:161827839-161827840	Enhancers	n/a	n/a	Overlapped CNVs	n/a
43	rs145338500	chr3:161827862-161827863	Enhancers	n/a	n/a	Overlapped CNVs	n/a
44	rs550101187	chr3:161827865-161827866	Enhancers	n/a	n/a	Overlapped CNVs	n/a
45	rs115171861	chr3:161827871-161827872	Enhancers	n/a	n/a	Overlapped CNVs	n/a
46	rs540158425	chr3:161827875-161827876	Enhancers	n/a	n/a	Overlapped CNVs	n/a
47	rs188732534	chr3:161827877-161827878	Enhancers	n/a	n/a	Overlapped CNVs	n/a
48	rs556469923	chr3:161827878-161827879	Enhancers	n/a	n/a	Overlapped CNVs	n/a
49	rs375258188	chr3:161827879-161827880	Enhancers	n/a	n/a	Overlapped CNVs	n/a
50	rs567064197	chr3:161827883-161827884	Enhancers	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:62)

Disease	PMID	Source
Basal cell lymphoma	17053054	CNVD
Esophageal cancer	21851588	CNVD
Uveal melanoma	21693616	CNVD
Glioblastoma multiforme	21080181	CNVD
Retinoblastoma	21504564	CNVD
Medulloblastoma	21979893	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Intellectual disability	22102821	CNVD
Autism	22495311	CNVD
Lung cancer	18438408	CNVD
Squamous cell cancer	20885788	CNVD
Melanoma	18172304	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Breast cancer	22032731	CNVD
Breast cancer	16461572	CNVD
Neuroblastoma	17533364	CNVD
Cervical Cancer	21857958	CNVD
Melanoma	21693616	CNVD
Lung cancer	21426551	CNVD
Cancer	21637783	CNVD
Cervical cancer	21063398	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Liposarcoma	21253554	CNVD
Oral cancer	21386901	CNVD
Renal cell carcinoma	19461508	CNVD
Cancer	22065749	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Basal cell lymphoma	21115979	CNVD
head and neck squamous cell carcinoma	17671120	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Myelodysplastic syndrome	21251322	CNVD
small cell lung cancer	20016488	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Breast cancer	16608533	CNVD
Acute myeloid leukemia	20729466	CNVD
Non-small cell lung cancer	19010865	CNVD
Prostate cancer	18632612	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Ovarian clear cell carcinoma	21343371	CNVD
Colorectal cancer	16272173	CNVD
Prostate cancer	16547154	CNVD
Breast cancer	21364760	CNVD
Gastrointestinal stromal cancer	20818650	CNVD
Prostate cancer	16573809	CNVD
Breast cancer	21785460	CNVD
Bladder cancer	21909424	CNVD
Sudden cardiac death	19188705	CNVD
Mantle cell lymphoma	19029149	CNVD
Malformation	19546859	CNVD
Schizophrenia	19546859	CNVD
Breast cancer	17133270	CNVD
Myelofibrosis	22110671	CNVD
Hirschsprung''s Disease	21712996	CNVD
Attention deficit hyperactivity disorder	21324949	CNVD
Barrett''s adenocarcinoma	18663352	CNVD
epilepsy	18472482	CNVD
Myeloproliferative neoplasm	20015882	CNVD
Myxofibrosarcoma	16751306	CNVD
Parkinson disease	21907011	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:161821200-161822200	Enhancers	Dnd41	blood
2	chr3:161827600-161831400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr3:161827800-161829400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr3:161828800-161829000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr3:161828800-161829400	Enhancers	Brain Germinal Matrix	brain
6	chr3:161829400-161829800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr3:161829400-161834200	Weak transcription	Brain Germinal Matrix	brain
8	chr3:161829600-161829800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr3:161829800-161830000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr3:161830000-161834200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr3:161831400-161834000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr3:161833600-161834800	Enhancers	HUES48 Cell Line	embryonic stem cell
13	chr3:161834000-161836000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr3:161834200-161834800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr3:161834200-161834800	Enhancers	iPS-20b Cell Line	embryonic stem cell
16	chr3:161834200-161834800	Enhancers	Brain Germinal Matrix	brain
17	chr3:161834400-161834800	Enhancers	ES-I3 Cell Line	embryonic stem cell
18	chr3:161834400-161834800	Enhancers	HUES6 Cell Line	embryonic stem cell
19	chr3:161834400-161834800	Enhancers	iPS-18 Cell Line	embryonic stem cell
20	chr3:161834800-161835400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr3:161834800-161835800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
22	chr3:161834800-161835800	Weak transcription	HUES6 Cell Line	embryonic stem cell
23	chr3:161835400-161836000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr3:161835600-161836200	Active TSS	A549	lung
25	chr3:161835800-161836000	Enhancers	ES-I3 Cell Line	embryonic stem cell
26	chr3:161835800-161836000	Enhancers	HUES6 Cell Line	embryonic stem cell
27	chr3:161840000-161840800	Enhancers	Adipose Nuclei	Adipose
28	chr3:161840000-161841200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr3:161840000-161842400	Enhancers	Fetal Intestine Large	intestine
30	chr3:161840200-161841400	Enhancers	Fetal Intestine Small	intestine
31	chr3:161842400-161843400	Weak transcription	Fetal Intestine Large	intestine
32	chr3:161843400-161843600	Enhancers	Fetal Intestine Large	intestine
33	chr3:161843400-161843800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
34	chr3:161843400-161844000	Enhancers	Fetal Heart	heart
35	chr3:161843800-161847800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
36	chr3:161844000-161848000	Weak transcription	Fetal Heart	heart
37	chr3:161844600-161844800	Enhancers	Aorta	Aorta
38	chr3:161845000-161847400	Weak transcription	Aorta	Aorta

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links