Variant report

Variant	nsv877724
Chromosome Location	chr3:162022959-162198135
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr3:162118223..162119105-chr3:162517137..162517997,2	MCF-7	breast:
2	chr3:162084506..162087458-chr3:162087812..162089576,2	MCF-7	breast:
3	chr3:162122033..162123865-chr3:162146680..162148744,2	K562	blood:
4	chr3:162084506..162087458-chr3:162087812..162089576,2	MCF-7	breast:
5	chr3:162161201..162163178-chr3:162177234..162178956,2	MCF-7	breast:
6	chr3:162065911..162068435-chr3:162071341..162073387,2	K562	blood:
7	chr3:162065911..162068435-chr3:162071341..162073387,2	K562	blood:
8	chr3:162122033..162123865-chr3:162146680..162148744,2	K562	blood:
9	chr3:162161201..162163178-chr3:162177234..162178956,2	MCF-7	breast:

No data

Extended variants
information (count: 2260 )
Associated
traits (count: 70 )

Variant overlapped rSNPs/rCNVs (count:2260 , 50 per page) page: 1 2 3 4 5 6 7 ... 46

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs7651936	chr3:162022959-162022960	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
2	rs180991167	chr3:162022973-162022974	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs142073330	chr3:162023003-162023004	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs151157192	chr3:162023012-162023013	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs570111366	chr3:162023032-162023033	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs539080285	chr3:162023045-162023046	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs546342390	chr3:162023088-162023089	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs566584243	chr3:162023098-162023099	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs140209514	chr3:162023116-162023117	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs73876240	chr3:162023121-162023122	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
11	rs375928003	chr3:162023125-162023126	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs77087048	chr3:162023161-162023162	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs536267789	chr3:162023184-162023185	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs554570395	chr3:162023220-162023221	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs575947170	chr3:162023233-162023234	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs538534941	chr3:162023255-162023256	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs566091445	chr3:162023258-162023259	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs185369537	chr3:162023309-162023310	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs190132870	chr3:162023312-162023313	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs144067266	chr3:162023370-162023371	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs182686904	chr3:162023404-162023405	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs373371068	chr3:162023427-162023428	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs560358477	chr3:162023462-162023463	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs13079134	chr3:162023466-162023467	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs369036629	chr3:162023503-162023504	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs541620111	chr3:162023577-162023578	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs561910937	chr3:162023594-162023595	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs530666559	chr3:162023618-162023619	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs550439974	chr3:162023674-162023675	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs564053668	chr3:162023686-162023687	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs572985194	chr3:162023725-162023726	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs532736994	chr3:162023728-162023729	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs546577982	chr3:162023729-162023730	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs79849668	chr3:162023808-162023809	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs535522338	chr3:162023819-162023820	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs548849088	chr3:162023834-162023835	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs551809846	chr3:162023886-162023887	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs146485641	chr3:162023888-162023889	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs386667685	chr3:162023915-162023916	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs114979624	chr3:162023916-162023917	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs188215297	chr3:162023969-162023970	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs571995771	chr3:162024024-162024025	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs533896548	chr3:162024025-162024026	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs554147562	chr3:162024026-162024027	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs141041646	chr3:162024041-162024042	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs538086695	chr3:162024043-162024044	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs543106093	chr3:162024055-162024056	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs556268767	chr3:162024108-162024109	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs575060967	chr3:162024116-162024117	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs534066675	chr3:162024120-162024121	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:70)

Disease	PMID	Source
Basal cell lymphoma	17053054	CNVD
Esophageal cancer	21851588	CNVD
Uveal melanoma	21693616	CNVD
Glioblastoma multiforme	21080181	CNVD
Retinoblastoma	21504564	CNVD
Medulloblastoma	21979893	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Intellectual disability	22102821	CNVD
Autism	22495311	CNVD
Lung cancer	18438408	CNVD
Squamous cell cancer	20885788	CNVD
Melanoma	18172304	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Breast cancer	22032731	CNVD
Breast cancer	16461572	CNVD
Neuroblastoma	17533364	CNVD
Cervical Cancer	21857958	CNVD
Melanoma	21693616	CNVD
Lung cancer	21426551	CNVD
Cancer	21637783	CNVD
Cervical cancer	21063398	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Liposarcoma	21253554	CNVD
Oral cancer	21386901	CNVD
Renal cell carcinoma	19461508	CNVD
Cancer	22065749	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Basal cell lymphoma	21115979	CNVD
head and neck squamous cell carcinoma	17671120	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Myelodysplastic syndrome	21251322	CNVD
small cell lung cancer	20016488	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Breast cancer	16608533	CNVD
Acute myeloid leukemia	20729466	CNVD
Non-small cell lung cancer	19010865	CNVD
Prostate cancer	18632612	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Ovarian clear cell carcinoma	21343371	CNVD
Colorectal cancer	16272173	CNVD
Prostate cancer	16547154	CNVD
Breast cancer	21364760	CNVD
Gastrointestinal stromal cancer	20818650	CNVD
Prostate cancer	16573809	CNVD
Breast cancer	21785460	CNVD
Bladder cancer	21909424	CNVD
Sudden cardiac death	19188705	CNVD
Mantle cell lymphoma	19029149	CNVD
Malformation	19546859	CNVD
Schizophrenia	19546859	CNVD
Breast cancer	17133270	CNVD
Myelofibrosis	22110671	CNVD
Hirschsprung''s Disease	21712996	CNVD
Attention deficit hyperactivity disorder	21324949	CNVD
Barrett''s adenocarcinoma	18663352	CNVD
epilepsy	18472482	CNVD
Myeloproliferative neoplasm	20015882	CNVD
Myxofibrosarcoma	16751306	CNVD
Parkinson disease	21907011	CNVD
Lung cancer	20668451	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Breast cancer	22522925	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD
Schizophrenia	23813976	CNVD

Chromatin state (count:158 , 50 per page) page: 1 2 3 4

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:162021400-162026000	Weak transcription	Dnd41	blood
2	chr3:162024200-162025400	Weak transcription	Right Atrium	heart
3	chr3:162025400-162025800	Strong transcription	Right Atrium	heart
4	chr3:162025800-162026200	ZNF genes & repeats	Right Atrium	heart
5	chr3:162026000-162026400	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr3:162026000-162026400	ZNF genes & repeats	Dnd41	blood
7	chr3:162047200-162047400	Enhancers	A549	lung
8	chr3:162047400-162047800	Flanking Active TSS	A549	lung
9	chr3:162052200-162053000	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
10	chr3:162052400-162053000	ZNF genes & repeats	Dnd41	blood
11	chr3:162052600-162053000	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr3:162053000-162056000	Weak transcription	Dnd41	blood
13	chr3:162055200-162057000	Enhancers	Muscle Satellite Cultured Cells	--
14	chr3:162055400-162057000	Enhancers	HSMM	muscle
15	chr3:162056000-162057200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr3:162056000-162057200	Enhancers	Dnd41	blood
17	chr3:162056200-162056800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr3:162056600-162057000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr3:162059200-162060000	Enhancers	Dnd41	blood
20	chr3:162066200-162067000	Enhancers	Colon Smooth Muscle	Colon
21	chr3:162066600-162066800	Enhancers	Fetal Lung	lung
22	chr3:162066600-162067000	Enhancers	Stomach Smooth Muscle	stomach
23	chr3:162067000-162071200	Weak transcription	Colon Smooth Muscle	Colon
24	chr3:162070800-162072000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr3:162070800-162072000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr3:162070800-162072000	Enhancers	Fetal Stomach	stomach
27	chr3:162071000-162072000	Enhancers	Primary hematopoietic stem cells short term culture	blood
28	chr3:162071000-162072400	Enhancers	Primary hematopoietic stem cells	blood
29	chr3:162071200-162071800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr3:162071200-162071800	Enhancers	Colon Smooth Muscle	Colon
31	chr3:162071200-162071800	Enhancers	HSMM	muscle
32	chr3:162071200-162072000	Enhancers	Dnd41	blood
33	chr3:162071200-162072200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr3:162071400-162071800	Enhancers	Fetal Kidney	kidney
35	chr3:162071800-162072600	Enhancers	Muscle Satellite Cultured Cells	--
36	chr3:162082000-162082200	Enhancers	Rectal Smooth Muscle	rectum
37	chr3:162082000-162083400	Enhancers	Colon Smooth Muscle	Colon
38	chr3:162082200-162082400	Enhancers	Fetal Stomach	stomach
39	chr3:162082200-162083200	Weak transcription	Rectal Smooth Muscle	rectum
40	chr3:162082400-162083200	Weak transcription	Fetal Stomach	stomach
41	chr3:162082600-162085000	Enhancers	Dnd41	blood
42	chr3:162082800-162088400	Enhancers	Fetal Heart	heart
43	chr3:162083200-162083400	Enhancers	Rectal Smooth Muscle	rectum
44	chr3:162083200-162083600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
45	chr3:162083200-162086400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
46	chr3:162083200-162087800	Enhancers	Fetal Stomach	stomach
47	chr3:162083400-162084000	Enhancers	Muscle Satellite Cultured Cells	--
48	chr3:162083400-162084000	Weak transcription	Rectal Smooth Muscle	rectum
49	chr3:162083400-162084400	Weak transcription	Colon Smooth Muscle	Colon
50	chr3:162083600-162085600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links