Variant report

Variant	nsv877789
Chromosome Location	chr3:162682825-162733793
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:162692633..162695202-chr3:162700914..162703834,2	MCF-7	breast:
2	chr3:162695238..162696118-chr5:168564460..168564967,2	MCF-7	breast:
3	chr20:11421691..11422663-chr3:162694553..162695419,2	MCF-7	breast:
4	chr3:162730866..162732605-chr3:162732763..162734314,2	MCF-7	breast:
5	chr3:162692633..162695202-chr3:162700914..162703834,2	MCF-7	breast:
6	chr3:162730866..162732605-chr3:162732763..162734314,2	MCF-7	breast:

Extended variants
information (count: 844 )
Associated
traits (count: 63 )

Variant overlapped rSNPs/rCNVs (count:844 , 50 per page) page: 1 2 3 4 5 6 7 ... 17

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs144128649	chr3:162683805-162683806	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
2	rs539498021	chr3:162683812-162683813	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
3	rs10212444	chr3:162683856-162683857	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
4	rs146521768	chr3:162683865-162683866	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
5	rs542328626	chr3:162683881-162683882	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
6	rs561991799	chr3:162683895-162683896	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
7	rs182576144	chr3:162683904-162683905	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
8	rs140482188	chr3:162683905-162683906	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
9	rs534311386	chr3:162683911-162683912	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
10	rs532426124	chr3:162683919-162683920	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
11	rs60422008	chr3:162683920-162683921	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
12	rs559317317	chr3:162683960-162683961	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
13	rs374755274	chr3:162683986-162683987	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
14	rs186860021	chr3:162683988-162683989	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
15	rs548271325	chr3:162683989-162683990	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
16	rs191744686	chr3:162683995-162683996	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
17	rs531177435	chr3:162684005-162684006	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
18	rs550761500	chr3:162684006-162684007	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
19	rs368858431	chr3:162684012-162684013	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
20	rs570840221	chr3:162684014-162684015	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
21	rs539757121	chr3:162684026-162684027	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
22	rs145215810	chr3:162684036-162684037	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
23	rs149163921	chr3:162684050-162684051	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
24	rs184237089	chr3:162684058-162684059	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
25	rs10212178	chr3:162684129-162684130	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
26	rs375898958	chr3:162684135-162684136	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
27	rs367996154	chr3:162684156-162684157	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
28	rs543670143	chr3:162684198-162684199	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
29	rs557177314	chr3:162684227-162684228	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
30	rs577079188	chr3:162684272-162684273	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
31	rs371885852	chr3:162684282-162684283	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
32	rs546141295	chr3:162684291-162684292	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
33	rs28898349	chr3:162684340-162684341	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
34	rs576201285	chr3:162684343-162684344	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
35	rs537228026	chr3:162690204-162690205	Enhancers	n/a	n/a	Overlapped CNVs	n/a
36	rs9290159	chr3:162690247-162690248	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
37	rs981916	chr3:162690328-162690329	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
38	rs142547264	chr3:162690339-162690340	Enhancers	n/a	n/a	Overlapped CNVs	n/a
39	rs981917	chr3:162690367-162690368	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
40	rs181218182	chr3:162690388-162690389	Enhancers	n/a	n/a	Overlapped CNVs	n/a
41	rs541545790	chr3:162690432-162690433	Enhancers	n/a	n/a	Overlapped CNVs	n/a
42	rs981918	chr3:162690509-162690510	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
43	rs150262852	chr3:162690531-162690532	Enhancers	n/a	n/a	Overlapped CNVs	n/a
44	rs550736953	chr3:162690571-162690572	Enhancers	n/a	n/a	Overlapped CNVs	n/a
45	rs543902018	chr3:162690582-162690583	Enhancers	n/a	n/a	Overlapped CNVs	n/a
46	rs184330930	chr3:162690603-162690604	Enhancers	n/a	n/a	Overlapped CNVs	n/a
47	rs533469123	chr3:162690630-162690631	Enhancers	n/a	n/a	Overlapped CNVs	n/a
48	rs547227437	chr3:162690635-162690636	Enhancers	n/a	n/a	Overlapped CNVs	n/a
49	rs566775691	chr3:162690643-162690644	Enhancers	n/a	n/a	Overlapped CNVs	n/a
50	rs6797966	chr3:162690829-162690830	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a

Variant related diseases (count:63)

Disease	PMID	Source
Basal cell lymphoma	17053054	CNVD
Esophageal cancer	21851588	CNVD
Uveal melanoma	21693616	CNVD
Glioblastoma multiforme	21080181	CNVD
Retinoblastoma	21504564	CNVD
Medulloblastoma	21979893	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Intellectual disability	22102821	CNVD
Autism	22495311	CNVD
Lung cancer	18438408	CNVD
Squamous cell cancer	20885788	CNVD
Melanoma	18172304	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Breast cancer	22032731	CNVD
Breast cancer	16461572	CNVD
Neuroblastoma	17533364	CNVD
Cervical Cancer	21857958	CNVD
Melanoma	21693616	CNVD
Lung cancer	21426551	CNVD
Cancer	21637783	CNVD
Cervical cancer	21063398	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Liposarcoma	21253554	CNVD
Oral cancer	21386901	CNVD
Renal cell carcinoma	19461508	CNVD
Cancer	22065749	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Basal cell lymphoma	21115979	CNVD
head and neck squamous cell carcinoma	17671120	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Myelodysplastic syndrome	21251322	CNVD
small cell lung cancer	20016488	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Breast cancer	16608533	CNVD
Acute myeloid leukemia	20729466	CNVD
Non-small cell lung cancer	19010865	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Ovarian clear cell carcinoma	21343371	CNVD
Colorectal cancer	16272173	CNVD
Prostate cancer	16547154	CNVD
Breast cancer	21364760	CNVD
Gastrointestinal stromal cancer	20818650	CNVD
Prostate cancer	16573809	CNVD
Breast cancer	21785460	CNVD
Sudden cardiac death	19188705	CNVD
Mantle cell lymphoma	19029149	CNVD
Malformation	19546859	CNVD
Schizophrenia	19546859	CNVD
Breast cancer	17133270	CNVD
Myelofibrosis	22110671	CNVD
Hirschsprung''s Disease	21712996	CNVD
Attention deficit hyperactivity disorder	21324949	CNVD
Barrett''s adenocarcinoma	18663352	CNVD
epilepsy	18472482	CNVD
Myeloproliferative neoplasm	20015882	CNVD
Myxofibrosarcoma	16751306	CNVD
Parkinson disease	21907011	CNVD
Bladder cancer	21909424	CNVD
Breast cancer	22522925	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD
Non-syndromic sensorineural hearing loss	21293372	CNVD

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:162683800-162684200	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
2	chr3:162683800-162684400	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
3	chr3:162690200-162692200	Enhancers	Dnd41	blood
4	chr3:162691200-162691800	Enhancers	A549	lung
5	chr3:162691800-162695400	Weak transcription	A549	lung
6	chr3:162695400-162696200	Enhancers	A549	lung
7	chr3:162702200-162702600	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr3:162702400-162702600	Enhancers	HUES6 Cell Line	embryonic stem cell
9	chr3:162702400-162702800	Enhancers	Aorta	Aorta
10	chr3:162702400-162702800	Active TSS	Hela-S3	cervix
11	chr3:162702400-162703000	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr3:162702600-162702800	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
13	chr3:162702600-162703200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr3:162703200-162704800	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
15	chr3:162704800-162707800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr3:162710600-162710800	Enhancers	Dnd41	blood
17	chr3:162710800-162711000	Weak transcription	Dnd41	blood
18	chr3:162711000-162713600	ZNF genes & repeats	Dnd41	blood
19	chr3:162713600-162714400	Weak transcription	Dnd41	blood
20	chr3:162714400-162714800	Enhancers	iPS-15b Cell Line	embryonic stem cell
21	chr3:162714400-162715200	Enhancers	Dnd41	blood
22	chr3:162715200-162716400	Flanking Active TSS	Dnd41	blood
23	chr3:162715400-162716000	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr3:162715400-162716200	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr3:162715400-162716200	Enhancers	Colon Smooth Muscle	Colon
26	chr3:162715400-162716200	Active TSS	Duodenum Smooth Muscle	Duodenum
27	chr3:162715600-162715800	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr3:162715600-162716000	Active TSS	Adipose Nuclei	Adipose
29	chr3:162715600-162716000	Active TSS	Aorta	Aorta
30	chr3:162715600-162716000	Active TSS	Rectal Mucosa Donor 29	rectum
31	chr3:162715600-162716000	Active TSS	Stomach Smooth Muscle	stomach
32	chr3:162715600-162716200	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr3:162715600-162716200	Active TSS	Brain Inferior Temporal Lobe	brain
34	chr3:162715600-162716800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
35	chr3:162715800-162716000	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr3:162715800-162716600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr3:162715800-162716600	Enhancers	iPS-18 Cell Line	embryonic stem cell
38	chr3:162716000-162716200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
39	chr3:162716000-162716200	Weak transcription	Rectal Mucosa Donor 29	rectum
40	chr3:162716200-162716400	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
41	chr3:162716200-162716600	Enhancers	Rectal Mucosa Donor 29	rectum
42	chr3:162716400-162718000	Enhancers	Dnd41	blood
43	chr3:162724800-162725600	Enhancers	Dnd41	blood

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