Variant report

Variant	nsv878460
Chromosome Location	chr4:3260154-3303976
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:723)
CpG islands
(count:1772)
Chromatin interactive
region (count:68)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:723 , 50 per page) page: 1 2 3 4 5 6 7 ... 15

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr4:3293525-3293690	HepG2	liver:	n/a	n/a
2	ATF1	chr4:3265569-3265894	K562	blood:	n/a	n/a
3	ATF2	chr4:3287771-3288267	GM12878	blood:	n/a	n/a
4	ATF2	chr4:3287878-3288195	GM12878	blood:	n/a	n/a
5	BACH1	chr4:3293851-3294599	H1-hESC	embryonic stem cell:	n/a	n/a
6	BATF	chr4:3287890-3288189	GM12878	blood:	n/a	n/a
7	BCL11A	chr4:3287860-3288159	GM12878	blood:	n/a	n/a
8	BCL11A	chr4:3287908-3288214	GM12878	blood:	n/a	n/a
9	BCL3	chr4:3299110-3299479	GM12878	blood:	n/a	n/a
10	BCL3	chr4:3301718-3302065	GM12878	blood:	n/a	chr4:3301978-3301991
11	BCL3	chr4:3298257-3298480	GM12878	blood:	n/a	n/a
12	BCL3	chr4:3299125-3299446	GM12878	blood:	n/a	n/a
13	BHLHE40	chr4:3294320-3294520	GM12878	blood:	n/a	n/a
14	BHLHE40	chr4:3269888-3269923	K562	blood:	n/a	n/a
15	BHLHE40	chr4:3286429-3286762	HepG2	liver:	n/a	n/a
16	BHLHE40	chr4:3293912-3294112	GM12878	blood:	n/a	chr4:3294055-3294071 chr4:3293992-3294008
17	BHLHE40	chr4:3286433-3286738	K562	blood:	n/a	n/a
18	BHLHE40	chr4:3287854-3288237	GM12878	blood:	n/a	n/a
19	BHLHE40	chr4:3293893-3294609	K562	blood:	n/a	chr4:3294055-3294071 chr4:3293992-3294008
20	BHLHE40	chr4:3293310-3294186	HepG2	liver:	n/a	chr4:3294055-3294071 chr4:3293992-3294008
21	BHLHE40	chr4:3294399-3294612	HepG2	liver:	n/a	n/a
22	BHLHE40	chr4:3295622-3295699	K562	blood:	n/a	n/a
23	BRCA1	chr4:3295798-3295907	GM12878	blood:	n/a	n/a
24	BRCA1	chr4:3294288-3294477	H1-hESC	embryonic stem cell:	n/a	n/a
25	BRCA1	chr4:3294300-3294363	HepG2	liver:	n/a	n/a
26	CBX3	chr4:3294295-3294586	K562	blood:	n/a	n/a
27	CCNT2	chr4:3294235-3295326	K562	blood:	n/a	n/a
28	CEBPB	chr4:3287826-3288147	HepG2	liver:	n/a	n/a
29	CEBPB	chr4:3269765-3270208	MCF-7	breast:	n/a	n/a
30	CEBPB	chr4:3259805-3260172	IMR90	lung:	n/a	n/a
31	CEBPB	chr4:3269820-3270145	H1-hESC	embryonic stem cell:	n/a	n/a
32	CEBPB	chr4:3269742-3270204	MCF-7	breast:	n/a	n/a
33	CEBPB	chr4:3269796-3270131	K562	blood:	n/a	n/a
34	CEBPB	chr4:3297260-3297479	K562	blood:	n/a	n/a
35	CEBPB	chr4:3269842-3270158	Hela-S3	cervix:	n/a	n/a
36	CEBPB	chr4:3269820-3270074	IMR90	lung:	n/a	n/a
37	CEBPB	chr4:3287881-3288189	IMR90	lung:	n/a	n/a
38	CEBPB	chr4:3269798-3270088	ECC-1	luminal epithelium:	n/a	n/a
39	CEBPB	chr4:3269888-3270143	HepG2	liver:	n/a	n/a
40	CEBPB	chr4:3269915-3270022	HepG2	liver:	n/a	n/a
41	CEBPD	chr4:3294159-3294517	HepG2	liver:	n/a	n/a
42	CEBPD	chr4:3294628-3295006	HepG2	liver:	n/a	n/a
43	CHD1	chr4:3294231-3294395	H1-hESC	embryonic stem cell:	n/a	n/a
44	CHD2	chr4:3287316-3287324	HepG2	liver:	n/a	n/a
45	CHD2	chr4:3293475-3293521	HepG2	liver:	n/a	n/a
46	CHD2	chr4:3294307-3294604	GM12878	blood:	n/a	n/a
47	CHD2	chr4:3294339-3294459	K562	blood:	n/a	n/a
48	CHD2	chr4:3294284-3294796	Hela-S3	cervix:	n/a	n/a
49	CHD2	chr4:3294235-3294626	H1-hESC	embryonic stem cell:	n/a	n/a
50	CHD2	chr4:3280608-3280812	K562	blood:	n/a	n/a

(count:1772 , 50 per page) page: 1 2 3 4 5 6 7 ... 36

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr4:3288101-3288151	HepG2	liver:	n/a
2	chr4:3263456-3263506	IMR90	lung:	fetal
3	chr4:3287777-3287827	HCM	heart:	n/a
4	chr4:3288101-3288151	HepG2	liver:	n/a
5	chr4:3263456-3263506	IMR90	lung:	fetal
6	chr4:3287777-3287827	HCM	heart:	n/a
7	chr4:3278748-3278798	ProgFib	skin:	n/a
8	chr4:3261226-3261276	NB4	blood:	n/a
9	chr4:3270609-3270659	SK-N-SH_RA	brain:	n/a
10	chr4:3263249-3263299	PFSK-1	brain:	n/a
11	chr4:3287777-3287827	MCF10A-Er-Src	breast:	n/a
12	chr4:3265114-3265164	GM06990	blood:	n/a
13	chr4:3265114-3265164	Hepatocyte	liver:	n/a
14	chr4:3261226-3261276	SK-N-SH_RA	brain:	n/a
15	chr4:3288101-3288151	T-47D	breast:	n/a
16	chr4:3288101-3288151	NH-A	brain:	n/a
17	chr4:3263229-3263279	BE2_C	brain:	n/a
18	chr4:3261226-3261276	PANC-1	pancreas:	n/a
19	chr4:3270609-3270659	H1-hESC	embryonic stem cell:	embryo
20	chr4:3270609-3270659	AG04449	skin:	fetal
21	chr4:3261368-3261418	NH-A	brain:	n/a
22	chr4:3261368-3261418	CMK	blood:	n/a
23	chr4:3288876-3288926	AG04449	skin:	fetal
24	chr4:3265763-3265813	Hepatocyte	liver:	n/a
25	chr4:3265763-3265813	HL-60	blood:	n/a
26	chr4:3288876-3288926	NB4	blood:	n/a
27	chr4:3265080-3265130	HAEpiC	amniotic membrane:	n/a
28	chr4:3296283-3296333	K562	blood:	n/a
29	chr4:3288876-3288926	T-47D	breast:	n/a
30	chr4:3294241-3294291	CMK	blood:	n/a
31	chr4:3292386-3292436	T-47D	breast:	n/a
32	chr4:3265080-3265130	HepG2	liver:	n/a
33	chr4:3265080-3265130	U87	brain:	n/a
34	chr4:3295736-3295786	GM06990	blood:	n/a
35	chr4:3289826-3289876	HIPEpiC	eye:	n/a
36	chr4:3265080-3265130	SK-N-SH	brain:	n/a
37	chr4:3288648-3288698	MCF10A-Er-Src	breast:	n/a
38	chr4:3263456-3263506	HCF	heart:	n/a
39	chr4:3294592-3294642	AoSMC	blood vessel:	n/a
40	chr4:3278748-3278798	PFSK-1	brain:	n/a
41	chr4:3295736-3295786	AG09309	skin:	n/a
42	chr4:3295736-3295786	RPTEC	kidney:	n/a
43	chr4:3278748-3278798	GM19239	blood:	n/a
44	chr4:3265080-3265130	CMK	blood:	n/a
45	chr4:3287598-3287648	AG04449	skin:	fetal
46	chr4:3292386-3292436	IMR90	lung:	fetal
47	chr4:3278748-3278798	PrEC	prostate:	n/a
48	chr4:3293715-3293765	A549	lung:	n/a
49	chr4:3289826-3289876	CMK	blood:	n/a
50	chr4:3261318-3261368	HRPEpiC	eye:	n/a

(count:68 , 50 per page) page: 1 2

No.	Distal block	Cell Line	Cell type
1	chr4:3269278..3270856-chr4:3292386..3294072,2	MCF-7	breast:
2	chr4:3280159..3283756-chr4:3293492..3296158,5	MCF-7	breast:
3	chr4:3293993..3296488-chr4:3491954..3495229,3	MCF-7	breast:
4	chr4:3287370..3290195-chr4:3296120..3298356,2	K562	blood:
5	chr4:3265031..3267765-chr4:3268616..3271432,2	K562	blood:
6	chr4:3283519..3286259-chr4:3292639..3294370,2	K562	blood:
7	chr4:3274170..3275829-chr4:3293508..3295795,2	MCF-7	breast:
8	chr4:3220220..3221940-chr4:3299861..3302041,2	MCF-7	breast:
9	chr4:3294026..3296810-chr4:3301953..3306532,4	MCF-7	breast:
10	chr4:3268743..3271551-chr4:3273568..3275857,3	MCF-7	breast:
11	chr4:3292758..3295748-chr4:3341243..3344299,3	MCF-7	breast:
12	chr4:3284056..3285844-chr4:3292232..3294141,2	MCF-7	breast:
13	chr4:3269278..3270856-chr4:3292386..3294072,2	MCF-7	breast:
14	chr4:3284172..3287055-chr4:3294600..3296499,2	K562	blood:
15	chr4:3299078..3301560-chr4:3303600..3305932,2	MCF-7	breast:
16	chr4:3287370..3290195-chr4:3296120..3298356,2	K562	blood:
17	chr4:3268743..3271551-chr4:3273568..3275857,3	MCF-7	breast:
18	chr4:3272762..3274789-chr4:3288374..3291256,2	MCF-7	breast:
19	chr4:3277870..3279701-chr4:3282246..3285205,2	MCF-7	breast:
20	chr4:3284056..3285844-chr4:3292232..3294141,2	MCF-7	breast:
21	chr4:3276654..3280609-chr4:3292569..3295812,3	MCF-7	breast:
22	chr4:3299099..3300843-chr4:3320328..3323004,2	MCF-7	breast:
23	chr4:3195952..3197606-chr4:3265003..3267231,2	K562	blood:
24	chr4:3302327..3305521-chr4:3308441..3313111,5	MCF-7	breast:
25	chr4:3265031..3267765-chr4:3268616..3271432,2	K562	blood:
26	chr4:3294486..3297470-chr4:3303664..3305673,2	MCF-7	breast:
27	chr4:3285178..3287998-chr4:3288416..3291256,2	K562	blood:
28	chr4:3292102..3294475-chr4:3451973..3453863,2	MCF-7	breast:
29	chr4:3293485..3295010-chr4:3317459..3319780,2	K562	blood:
30	chr4:3288141..3289800-chr4:3461769..3463366,2	MCF-7	breast:
31	chr4:3287264..3290154-chr4:3470213..3472155,2	MCF-7	breast:
32	chr4:3281505..3284592-chr4:3285630..3289153,4	MCF-7	breast:
33	chr4:3277870..3279701-chr4:3282246..3285205,2	MCF-7	breast:
34	chr4:3289451..3291897-chr4:3292555..3295827,4	K562	blood:
35	chr4:3293263..3296251-chr4:3298199..3300477,2	K562	blood:
36	chr4:3285178..3287998-chr4:3288416..3291256,2	K562	blood:
37	chr4:3272762..3274789-chr4:3288374..3291256,2	MCF-7	breast:
38	chr4:3292635..3294292-chr4:3500969..3502505,2	MCF-7	breast:
39	chr4:3297687..3301019-chr4:3306995..3308843,3	K562	blood:
40	chr4:3301249..3303803-chr4:3305446..3308056,2	MCF-7	breast:
41	chr4:3279004..3281041-chr4:3293063..3295560,2	K562	blood:
42	chr4:3251210..3252923-chr4:3261294..3264079,2	K562	blood:
43	chr4:3213994..3215627-chr4:3278478..3280944,2	MCF-7	breast:
44	chr4:3245063..3247633-chr4:3289230..3291965,2	MCF-7	breast:
45	chr4:3074885..3077461-chr4:3292207..3294882,2	MCF-7	breast:
46	chr4:3283519..3286259-chr4:3292639..3294370,2	K562	blood:
47	chr4:3298898..3300688-chr4:3301683..3304655,2	K562	blood:
48	chr4:2798786..2800390-chr4:3294087..3295620,2	MCF-7	breast:
49	chr4:3292471..3295854-chr4:3462941..3467927,8	MCF-7	breast:
50	chr4:3243567..3245468-chr4:3259325..3261175,2	MCF-7	breast:

No data

Variant related genes	Relation type
RGS12	TF binding region
RGS12	CpG island
ENSG00000188981	chromatin interactions
ENSG00000159788	chromatin interactions
ENSG00000197386	chromatin interactions
ENSG00000175920	chromatin interactions
ENSG00000251075	chromatin interactions
ENSG00000087266	chromatin interactions

Extended variants
information (count: 1990 )
Associated
traits (count: 57 )

Variant overlapped rSNPs/rCNVs (count:1990 , 50 per page) page: 1 2 3 4 5 6 7 ... 40

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs3025796	chr4:3260154-3260155	Strong transcription Genic enhancers Enhancers Weak transcription Bivalent Enhancer	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
2	rs572147168	chr4:3260176-3260177	Strong transcription Genic enhancers Enhancers Weak transcription Bivalent Enhancer	n/a	n/a	Overlapped CNVs	n/a
3	rs541159699	chr4:3260187-3260188	Strong transcription Genic enhancers Enhancers Weak transcription Bivalent Enhancer	n/a	n/a	Overlapped CNVs	n/a
4	rs564634499	chr4:3260199-3260200	Strong transcription Genic enhancers Enhancers Weak transcription Bivalent Enhancer	n/a	n/a	Overlapped CNVs	n/a
5	rs141261570	chr4:3260208-3260209	Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs544081328	chr4:3260209-3260210	Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs79719492	chr4:3260212-3260213	Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs529633042	chr4:3260284-3260285	Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs150791177	chr4:3260288-3260289	Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs559726669	chr4:3260314-3260315	Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs560718113	chr4:3260356-3260357	Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs528554816	chr4:3260425-3260426	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs551467667	chr4:3260428-3260429	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs193059618	chr4:3260434-3260435	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs539269281	chr4:3260443-3260444	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs550013056	chr4:3260456-3260457	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs116757676	chr4:3260493-3260494	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs543066961	chr4:3260494-3260495	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs183803033	chr4:3260510-3260511	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs139208926	chr4:3260519-3260520	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs534659429	chr4:3260521-3260522	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs187560817	chr4:3260610-3260611	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs578192960	chr4:3260638-3260639	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs543639119	chr4:3260642-3260643	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs557560145	chr4:3260651-3260652	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs574247836	chr4:3260685-3260686	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs192041724	chr4:3260695-3260696	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs184184172	chr4:3260703-3260704	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs528468176	chr4:3260739-3260740	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs564636980	chr4:3260767-3260768	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs199559348	chr4:3260769-3260770	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs397722733	chr4:3260783-3260784	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs145315503	chr4:3260837-3260838	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs188511279	chr4:3260893-3260894	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs552713286	chr4:3260992-3260993	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs549708948	chr4:3260998-3260999	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs569875751	chr4:3261018-3261019	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs532149712	chr4:3261042-3261043	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs529136996	chr4:3261121-3261122	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs3135171	chr4:3261127-3261128	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
41	rs3095074	chr4:3261152-3261153	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
42	rs534618730	chr4:3261177-3261178	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs557822166	chr4:3261194-3261195	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs571343783	chr4:3261203-3261204	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs537197160	chr4:3261226-3261227	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs557262018	chr4:3261227-3261228	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs574186015	chr4:3261242-3261243	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs542904201	chr4:3261303-3261304	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs191579076	chr4:3261318-3261319	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs369134190	chr4:3261319-3261320	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:57)

Disease	PMID	Source
Retinitis pigmentosa	18421352	CNVD
Wolf-Hirschhorn syndrome	19259404	CNVD
Bladder cancer	19242612	CNVD
Breast cancer	19242612	CNVD
Congenital anomalies of the kidney and urinary tract	19242612	CNVD
abnormal development	18461090	CNVD
Olfactory neuroblastoma	18408657	CNVD
Wilms tumour	21544195	CNVD
Melanoma	20688739	CNVD
Colorectal cancer	16272173	CNVD
Non-syndromic sensorineural hearing loss	20606397	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Breast cancer	17603634	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Medulloblastoma	21979893	CNVD
Basal cell lymphoma	17053054	CNVD
Colorectal cancer	19359472	CNVD
Neuroblastoma	17533364	CNVD
head and neck squamous cell carcinoma	17671120	CNVD
Cancer	21637783	CNVD
Melanoma	21693616	CNVD
Squamous cell cancer	21044232	CNVD
Colorectal cancer	20709793	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Non-small cell lung cancer	21044232	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	17387387	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	19960244	CNVD
Cervical cancer	21062161	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Glioblastoma multiforme	21080181	CNVD
Chordoma	21602918	CNVD
HIV/AIDS	22032296	CNVD
Neuroblastoma	18923191	CNVD
small cell lung cancer	20016488	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Developmental delay	21147756	CNVD
Urothelial carcinoma	21177765	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Lung cancer	18438408	CNVD
Prostate cancer	18632612	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Intellectual disability	22102821	CNVD
Autism	22495311	CNVD
Breast cancer	21785460	CNVD
Myelofibrosis	22110671	CNVD
Schizophrenia	21399695	CNVD
Pancreatic cancer	17952125	CNVD
Pancreatic ductal adenocarcinoma	19077451	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD
Chronic lymphocytic leukemia	20421269	CNVD
Breast cancer	22522925	CNVD

Chromatin state (count:1397 , 50 per page) page: 1 2 3 4 5 6 7 ... 28

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:3114600-3292400	Weak transcription	Right Atrium	heart
2	chr4:3238200-3261400	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr4:3246400-3261000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr4:3246600-3261400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr4:3247200-3261000	Weak transcription	Aorta	Aorta
6	chr4:3247600-3268400	Weak transcription	Primary T cells from cord blood	blood
7	chr4:3248800-3260800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr4:3251000-3262600	Weak transcription	Cortex derived primary cultured neurospheres	brain
9	chr4:3252400-3265200	Weak transcription	Fetal Lung	lung
10	chr4:3252400-3271400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr4:3253000-3262800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr4:3253200-3262200	Weak transcription	Placenta Amnion	Placenta Amnion
13	chr4:3253400-3260400	Strong transcription	Fetal Stomach	stomach
14	chr4:3255600-3260600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr4:3255800-3271000	Weak transcription	Brain Hippocampus Middle	brain
16	chr4:3257000-3271800	Weak transcription	Brain Cingulate Gyrus	brain
17	chr4:3257400-3260200	Strong transcription	Brain Inferior Temporal Lobe	brain
18	chr4:3258400-3271000	Weak transcription	Brain Anterior Caudate	brain
19	chr4:3258400-3271000	Weak transcription	Right Ventricle	heart
20	chr4:3258400-3271000	Weak transcription	Stomach Smooth Muscle	stomach
21	chr4:3258600-3260400	Weak transcription	Adipose Nuclei	Adipose
22	chr4:3258600-3269600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
23	chr4:3258800-3260400	Enhancers	HSMM	muscle
24	chr4:3258800-3260600	Enhancers	Primary B cells from peripheral blood	blood
25	chr4:3259200-3260200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr4:3259200-3269600	Weak transcription	Fetal Intestine Small	intestine
27	chr4:3259200-3270000	Weak transcription	Skeletal Muscle Female	skeletal muscle
28	chr4:3259400-3265200	Weak transcription	Skeletal Muscle Male	skeletal muscle
29	chr4:3259400-3269400	Weak transcription	Fetal Brain Female	brain
30	chr4:3259600-3260200	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr4:3259600-3269600	Weak transcription	Gastric	stomach
32	chr4:3259600-3269800	Weak transcription	Brain Germinal Matrix	brain
33	chr4:3259800-3260200	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
34	chr4:3259800-3260200	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
35	chr4:3259800-3260200	Enhancers	NH-A	brain
36	chr4:3260000-3261000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
37	chr4:3260000-3270200	Weak transcription	Pancreas	Pancrea
38	chr4:3260000-3270200	Weak transcription	Spleen	Spleen
39	chr4:3260200-3263200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
40	chr4:3260200-3269400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
41	chr4:3260200-3278200	Weak transcription	Brain Inferior Temporal Lobe	brain
42	chr4:3260400-3261200	Weak transcription	Fetal Stomach	stomach
43	chr4:3261200-3261600	Strong transcription	Fetal Stomach	stomach
44	chr4:3261600-3262800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
45	chr4:3261600-3264400	Weak transcription	Fetal Stomach	stomach
46	chr4:3263000-3265000	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
47	chr4:3263200-3263400	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
48	chr4:3263400-3263600	Flanking Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
49	chr4:3263600-3264200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
50	chr4:3264200-3273000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links