Variant report

Variant	nsv878613
Chromosome Location	chr4:8554894-8618916
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1505)
CpG islands
(count:3542)
Chromatin interactive
region (count:82)
LncRNA
region (count:15)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1505 , 50 per page) page: 1 2 3 4 5 6 7 ... 31

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr4:8596075-8596433	K562	blood:	n/a	n/a
2	ARID3A	chr4:8594303-8594474	K562	blood:	n/a	n/a
3	ATF2	chr4:8582336-8582809	H1-hESC	embryonic stem cell:	n/a	n/a
4	ATF2	chr4:8596088-8596524	H1-hESC	embryonic stem cell:	n/a	n/a
5	ATF2	chr4:8569984-8570498	H1-hESC	embryonic stem cell:	n/a	n/a
6	ATF3	chr4:8601461-8601771	K562	blood:	n/a	n/a
7	BACH1	chr4:8582079-8582264	H1-hESC	embryonic stem cell:	n/a	n/a
8	BCL3	chr4:8579745-8580023	GM12878	blood:	n/a	n/a
9	BCL3	chr4:8579732-8579963	GM12878	blood:	n/a	n/a
10	BCL3	chr4:8610662-8611065	GM12878	blood:	n/a	n/a
11	BCL3	chr4:8612532-8612922	GM12878	blood:	n/a	n/a
12	BCL3	chr4:8610576-8611046	GM12878	blood:	n/a	n/a
13	BHLHE40	chr4:8594327-8594941	K562	blood:	n/a	n/a
14	BHLHE40	chr4:8588537-8588647	K562	blood:	n/a	n/a
15	BHLHE40	chr4:8593127-8593244	K562	blood:	n/a	n/a
16	BHLHE40	chr4:8582469-8582507	K562	blood:	n/a	n/a
17	BHLHE40	chr4:8609534-8609694	A549	lung:	n/a	chr4:8609588-8609601
18	BHLHE40	chr4:8601384-8601739	K562	blood:	n/a	n/a
19	BHLHE40	chr4:8595611-8595677	K562	blood:	n/a	n/a
20	BHLHE40	chr4:8589655-8590092	K562	blood:	n/a	n/a
21	BHLHE40	chr4:8609354-8609763	K562	blood:	n/a	chr4:8609588-8609601
22	BHLHE40	chr4:8609413-8609700	HepG2	liver:	n/a	chr4:8609588-8609601
23	BHLHE40	chr4:8596119-8596493	K562	blood:	n/a	n/a
24	BHLHE40	chr4:8591224-8591267	GM12878	blood:	n/a	chr4:8591227-8591236
25	BHLHE40	chr4:8599078-8599278	K562	blood:	n/a	n/a
26	BHLHE40	chr4:8610202-8610572	GM12878	blood:	n/a	n/a
27	BHLHE40	chr4:8586835-8587170	K562	blood:	n/a	n/a
28	BHLHE40	chr4:8609432-8609738	GM12878	blood:	n/a	chr4:8609588-8609601
29	BHLHE40	chr4:8591090-8591396	K562	blood:	n/a	chr4:8591227-8591236
30	BRCA1	chr4:8601470-8601784	Hela-S3	cervix:	n/a	n/a
31	BRCA1	chr4:8564908-8564985	H1-hESC	embryonic stem cell:	n/a	n/a
32	BRCA1	chr4:8609454-8609550	HepG2	liver:	n/a	n/a
33	BRCA1	chr4:8609386-8609627	H1-hESC	embryonic stem cell:	n/a	n/a
34	BRCA1	chr4:8569877-8570345	H1-hESC	embryonic stem cell:	n/a	n/a
35	CBX3	chr4:8582296-8582613	K562	blood:	n/a	n/a
36	CBX3	chr4:8582339-8582560	K562	blood:	n/a	n/a
37	CCNT2	chr4:8605790-8606066	K562	blood:	n/a	n/a
38	CCNT2	chr4:8588768-8588840	K562	blood:	n/a	n/a
39	CCNT2	chr4:8589574-8589772	K562	blood:	n/a	n/a
40	CCNT2	chr4:8609385-8609607	K562	blood:	n/a	chr4:8609415-8609424
41	CCNT2	chr4:8582433-8582494	K562	blood:	n/a	n/a
42	CCNT2	chr4:8593208-8593591	K562	blood:	n/a	chr4:8593575-8593584
43	CCNT2	chr4:8594231-8595394	K562	blood:	n/a	chr4:8594298-8594307 chr4:8595237-8595246
44	CEBPB	chr4:8596290-8596572	A549	lung:	n/a	n/a
45	CEBPB	chr4:8558425-8558790	Hela-S3	cervix:	n/a	chr4:8558623-8558634
46	CEBPB	chr4:8558488-8558685	K562	blood:	n/a	chr4:8558623-8558634
47	CEBPB	chr4:8596175-8596686	Hela-S3	cervix:	n/a	n/a
48	CEBPB	chr4:8597461-8597467	K562	blood:	n/a	n/a
49	CEBPB	chr4:8596249-8596664	MCF-7	breast:	n/a	n/a
50	CEBPB	chr4:8596149-8596681	ECC-1	luminal epithelium:	n/a	n/a

(count:3542 , 50 per page) page: 1 2 3 4 5 6 7 ... 71

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr4:8582249-8582299	HRE	kidney:	n/a
2	chr4:8569129-8569179	NHBE	bronchial:	n/a
3	chr4:8583937-8583987	ECC-1	luminal epithelium:	n/a
4	chr4:8582300-8582350	ovcar-3	ovarian:	n/a
5	chr4:8582249-8582299	HRE	kidney:	n/a
6	chr4:8569129-8569179	NHBE	bronchial:	n/a
7	chr4:8583937-8583987	ECC-1	luminal epithelium:	n/a
8	chr4:8582300-8582350	ovcar-3	ovarian:	n/a
9	chr4:8616045-8616095	SK-N-MC	brain:	n/a
10	chr4:8582565-8582615	ovcar-3	ovarian:	n/a
11	chr4:8589313-8589363	HEEpiC	esophagus:	n/a
12	chr4:8589313-8589363	NB4	blood:	n/a
13	chr4:8609594-8609644	LNCaP	prostate:	n/a
14	chr4:8583937-8583987	GM06990	blood:	n/a
15	chr4:8602556-8602606	HUVEC	blood vessel:	n/a
16	chr4:8592328-8592378	HIPEpiC	eye:	n/a
17	chr4:8594857-8594907	GM12878	blood:	n/a
18	chr4:8609401-8609451	HAEpiC	amniotic membrane:	n/a
19	chr4:8583937-8583987	H1-hESC	embryonic stem cell:	embryo
20	chr4:8585142-8585192	AG04449	skin:	fetal
21	chr4:8602594-8602644	HCM	heart:	n/a
22	chr4:8609401-8609451	T-47D	breast:	n/a
23	chr4:8594776-8594826	NT2-D1	testis:	n/a
24	chr4:8581424-8581474	HRPEpiC	eye:	n/a
25	chr4:8603012-8603062	Hepatocyte	liver:	n/a
26	chr4:8592328-8592378	GM12878	blood:	n/a
27	chr4:8582171-8582221	MCF10A-Er-Src	breast:	n/a
28	chr4:8594324-8594374	ProgFib	skin:	n/a
29	chr4:8602556-8602606	AoSMC	blood vessel:	n/a
30	chr4:8581424-8581474	HNPCEpiC	eye:	n/a
31	chr4:8603130-8603180	CMK	blood:	n/a
32	chr4:8588858-8588908	H1-hESC	embryonic stem cell:	embryo
33	chr4:8582101-8582151	SAEC	small airway:	n/a
34	chr4:8603012-8603062	ECC-1	luminal epithelium:	n/a
35	chr4:8617910-8617960	HL-60	blood:	n/a
36	chr4:8587077-8587127	HCF	heart:	n/a
37	chr4:8602619-8602669	HRCEpiC	kidney:	n/a
38	chr4:8609401-8609451	MCF10A-Er-Src	breast:	n/a
39	chr4:8594776-8594826	HCF	heart:	n/a
40	chr4:8588802-8588852	Jurkat	blood:	n/a
41	chr4:8608003-8608053	HRPEpiC	eye:	n/a
42	chr4:8588858-8588908	MCF-7	breast:	n/a
43	chr4:8609401-8609451	ProgFib	skin:	n/a
44	chr4:8582110-8582160	IMR90	lung:	fetal
45	chr4:8559176-8559226	A549	lung:	n/a
46	chr4:8608361-8608411	HNPCEpiC	eye:	n/a
47	chr4:8582101-8582151	HepG2	liver:	n/a
48	chr4:8593665-8593715	A549	lung:	n/a
49	chr4:8616045-8616095	T-47D	breast:	n/a
50	chr4:8608486-8608536	HL-60	blood:	n/a

(count:82 , 50 per page) page: 1 2

No.	Distal block	Cell Line	Cell type
1	chr4:8549627..8551396-chr4:8591821..8593935,2	MCF-7	breast:
2	chr4:8582036..8584128-chr4:8589824..8592478,3	K562	blood:
3	chr4:8548779..8551744-chr4:8562159..8565274,3	MCF-7	breast:
4	chr4:8470225..8471528-chr4:8595848..8597093,11	K562	blood:
5	chr4:8429003..8431249-chr4:8585694..8587507,2	MCF-7	breast:
6	chr4:8568331..8569836-chr4:8571951..8573998,2	MCF-7	breast:
7	chr4:8506167..8508857-chr4:8582205..8583898,2	MCF-7	breast:
8	chr4:8587258..8589695-chr4:8592259..8593843,2	K562	blood:
9	chr4:8470834..8472351-chr4:8587366..8589099,2	MCF-7	breast:
10	chr4:8556055..8558103-chr4:8559735..8562498,2	MCF-7	breast:
11	chr4:8568331..8569836-chr4:8571951..8573998,2	MCF-7	breast:
12	chr4:8595691..8598338-chr4:8600228..8602977,2	MCF-7	breast:
13	chr4:8592274..8594245-chr4:8597755..8599882,2	MCF-7	breast:
14	chr4:8553165..8554998-chr4:8556622..8558175,2	MCF-7	breast:
15	chr4:8552374..8554859-chr4:8572916..8574549,2	K562	blood:
16	chr4:8604553..8606540-chr4:8607081..8609786,2	MCF-7	breast:
17	chr4:8550268..8552394-chr4:8552959..8555434,2	K562	blood:
18	chr4:8573294..8576745-chr4:8580946..8583751,3	MCF-7	breast:
19	chr4:8550768..8552665-chr4:8553902..8556293,3	MCF-7	breast:
20	chr4:8595503..8598248-chr4:8607204..8609791,3	MCF-7	breast:
21	chr4:8548395..8550784-chr4:8562641..8564902,2	K562	blood:
22	chr4:8558223..8560238-chr4:8582084..8583922,2	MCF-7	breast:
23	chr4:8470336..8471339-chr4:8588024..8588933,6	MCF-7	breast:
24	chr4:8595936..8597951-chr4:8606761..8608322,2	MCF-7	breast:
25	chr4:8595691..8598338-chr4:8600228..8602977,2	MCF-7	breast:
26	chr4:8468812..8470313-chr4:8589998..8592913,2	K562	blood:
27	chr4:8547587..8550346-chr4:8589117..8591927,3	MCF-7	breast:
28	chr4:8428794..8430882-chr4:8596413..8599395,2	MCF-7	breast:
29	chr4:8607464..8609784-chr4:8610863..8613633,2	MCF-7	breast:
30	chr4:8600582..8603192-chr4:8603240..8605634,2	K562	blood:
31	chr4:8562627..8565501-chr4:8586940..8588652,2	MCF-7	breast:
32	chr4:8586944..8588877-chr4:8595919..8597857,2	MCF-7	breast:
33	chr1:7246479..7246979-chr4:8580772..8581329,2	MCF-7	breast:
34	chr4:8586944..8588877-chr4:8595919..8597857,2	MCF-7	breast:
35	chr4:8582157..8584012-chr4:8592733..8594974,2	MCF-7	breast:
36	chr4:8572809..8575800-chr4:8576499..8580906,3	MCF-7	breast:
37	chr4:8550386..8551492-chr4:8588111..8588948,4	MCF-7	breast:
38	chr4:8470474..8471083-chr4:8586784..8587611,2	MCF-7	breast:
39	chr4:8548872..8549469-chr4:8586632..8587168,2	MCF-7	breast:
40	chr4:8562627..8565501-chr4:8586940..8588652,2	MCF-7	breast:
41	chr4:8599492..8601366-chr4:8617273..8620008,2	K562	blood:
42	chr4:8546192..8549127-chr4:8552223..8554914,2	K562	blood:
43	chr4:8587258..8589695-chr4:8592259..8593843,2	K562	blood:
44	chr4:8617932..8619527-chr4:8918338..8920672,2	MCF-7	breast:
45	chr4:8578448..8580242-chr4:8586074..8587928,2	K562	blood:
46	chr4:8592274..8594245-chr4:8597755..8599882,2	MCF-7	breast:
47	chr4:8595618..8598948-chr4:8601035..8605983,4	MCF-7	breast:
48	chr4:8470159..8471594-chr4:8587070..8589399,12	MCF-7	breast:
49	chr4:8553165..8554998-chr4:8556622..8558175,2	MCF-7	breast:
50	chr4:8507896..8508408-chr4:8595816..8596778,2	MCF-7	breast:

(count:15 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-METTL19-6	chr4:8594561-8594648	NONHSAT095111
2	lnc-GPR78-1	chr4:8560452-8560708	NONHSAT095109
3	lnc-CPZ-1	chr4:8563187-8563630	l_2598_chr4:8563186-8564790_brain
4	lnc-METTL19-6	chr4:8601180-8601688	NONHSAT095111
5	lnc-GPR78-1	chr4:8581964-8582431	NR_045511
6	lnc-GPR78-1	chr4:8574460-8574576	NONHSAT095109
7	lnc-CPZ-1	chr4:8564458-8564892	l_2598_chr4:8563186-8564790_brain
8	lnc-GPR78-1	chr4:8588781-8591750	NR_045511
9	lnc-GPR78-1	chr4:8562292-8562360	NONHSAT095110
10	lnc-GPR78-1	chr4:8584258-8584371	NR_045511
11	lnc-GPR78-1	chr4:8560326-8560708	XLOC_003447
12	lnc-GPR78-1	chr4:8582122-8582438	NONHSAT095110
13	lnc-GPR78-1	chr4:8562292-8562363	XLOC_003447
14	lnc-GPR78-1	chr4:8582122-8582251	NONHSAT095109
15	lnc-GPR78-1	chr4:8560559-8560708	NONHSAT095110

No data

Variant related genes	Relation type
CPZ	TF binding region
GPR78	TF binding region
CPZ	CpG island
GPR78	CpG island
ENSG00000155275	chromatin interactions
ENSG00000109625	chromatin interactions
ENSG00000087008	chromatin interactions
ENSG00000155269	chromatin interactions
ENSG00000205959	chromatin interactions
GADD45A	miRNA target sites
EIF2C1	miRNA target sites
GAK	miRNA target sites
GABRB3	miRNA target sites
NTRK3	miRNA target sites

Extended variants
information (count: 4271 )
Associated
traits (count: 56 )

Variant overlapped rSNPs/rCNVs (count:4271 , 50 per page) page: 1 2 3 4 5 6 7 ... 86

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs4696842	chr4:8554894-8554895	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
2	rs373281908	chr4:8554900-8554901	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
3	rs11723053	chr4:8554983-8554984	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
4	rs539352603	chr4:8555110-8555111	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
5	rs529192663	chr4:8555184-8555185	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
6	rs547729235	chr4:8555205-8555206	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
7	rs184057653	chr4:8555206-8555207	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
8	rs536235467	chr4:8555233-8555234	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
9	rs563183275	chr4:8555283-8555284	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
10	rs10643923	chr4:8555286-8555287	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
11	rs33957036	chr4:8555287-8555288	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
12	rs34227634	chr4:8555288-8555289	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
13	rs116637228	chr4:8555301-8555302	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
14	rs188695092	chr4:8555306-8555307	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
15	rs537112713	chr4:8555318-8555319	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
16	rs192172392	chr4:8555335-8555336	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
17	rs577369935	chr4:8555345-8555346	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
18	rs545332462	chr4:8555359-8555360	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
19	rs560179536	chr4:8555366-8555367	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
20	rs572042191	chr4:8555368-8555369	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
21	rs184435493	chr4:8555432-8555433	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
22	rs555528668	chr4:8555451-8555452	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
23	rs370463203	chr4:8555452-8555453	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
24	rs560840280	chr4:8555454-8555455	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
25	rs531451919	chr4:8555476-8555477	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
26	rs557682157	chr4:8555511-8555512	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
27	rs369776440	chr4:8555529-8555530	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
28	rs4696843	chr4:8555577-8555578	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
29	rs565482987	chr4:8555581-8555582	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
30	rs189282345	chr4:8555587-8555588	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
31	rs548102156	chr4:8555588-8555589	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
32	rs566219033	chr4:8555600-8555601	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
33	rs542608990	chr4:8555670-8555671	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
34	rs572785804	chr4:8555688-8555689	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
35	rs182323198	chr4:8555695-8555696	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
36	rs548305148	chr4:8555703-8555704	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
37	rs143356968	chr4:8555706-8555707	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
38	rs186323004	chr4:8555746-8555747	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
39	rs558622539	chr4:8555761-8555762	Weak transcription Enhancers	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
40	rs571149983	chr4:8555770-8555771	Weak transcription Enhancers	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
41	rs370247442	chr4:8555798-8555799	Weak transcription Enhancers	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
42	rs538441961	chr4:8555833-8555834	Weak transcription Enhancers	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
43	rs554063777	chr4:8555878-8555879	Weak transcription Enhancers	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
44	rs140060018	chr4:8555885-8555886	Weak transcription Enhancers	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
45	rs114169425	chr4:8555903-8555904	Weak transcription Enhancers	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
46	rs201260004	chr4:8555940-8555941	Weak transcription Enhancers	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
47	rs554618173	chr4:8555945-8555946	Weak transcription Enhancers	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
48	rs201436144	chr4:8555952-8555953	Weak transcription Enhancers	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
49	rs576062487	chr4:8555955-8555956	Weak transcription Enhancers	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
50	rs376094873	chr4:8555964-8555965	Weak transcription Enhancers	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:56)

Disease	PMID	Source
Melanoma	20688739	CNVD
Wilms tumour	21544195	CNVD
Colorectal cancer	16272173	CNVD
Non-syndromic sensorineural hearing loss	20606397	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Breast cancer	17603634	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Medulloblastoma	21979893	CNVD
Basal cell lymphoma	17053054	CNVD
Colorectal cancer	19359472	CNVD
Neuroblastoma	17533364	CNVD
head and neck squamous cell carcinoma	17671120	CNVD
Cancer	21637783	CNVD
Melanoma	21693616	CNVD
Squamous cell cancer	21044232	CNVD
Colorectal cancer	20709793	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Non-small cell lung cancer	21044232	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	17387387	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	19960244	CNVD
Cervical cancer	21062161	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Glioblastoma multiforme	21080181	CNVD
Chordoma	21602918	CNVD
HIV/AIDS	22032296	CNVD
Neuroblastoma	18923191	CNVD
small cell lung cancer	20016488	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Prostate cancer	18632612	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Intellectual disability	22102821	CNVD
Autism	22495311	CNVD
Breast cancer	21785460	CNVD
Chronic lymphocytic leukemia	20421269	CNVD
Breast cancer	21509527	CNVD
Lung cancer	18438408	CNVD
Urothelial carcinoma	21177765	CNVD
Myelofibrosis	22110671	CNVD
Hirschsprung''s Disease	21712996	CNVD
Schizophrenia	22241247	CNVD
Autosomal-dominant microtia	18179897	CNVD
Glioma	17123091	CNVD
Colorectal cancer	20459617	CNVD
Breast cancer	17133270	CNVD
Sezary syndrome	18413736	CNVD
Pancreatic ductal adenocarcinoma	19077451	CNVD
Pancreatic cancer	17952125	CNVD
Schizophrenia	21346763	CNVD
Breast cancer	22522925	CNVD

Chromatin state (count:957 , 50 per page) page: 1 2 3 4 5 6 7 ... 20

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:8544800-8556600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr4:8549400-8568400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr4:8551400-8555200	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr4:8551600-8556000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr4:8551600-8557600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr4:8553600-8558200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr4:8553800-8560400	Enhancers	Placenta	Placenta
8	chr4:8554400-8555200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr4:8555200-8556400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr4:8555200-8562600	Enhancers	Placenta Amnion	Placenta Amnion
11	chr4:8555400-8556600	Weak transcription	Pancreas	Pancrea
12	chr4:8556000-8556200	Enhancers	ES-I3 Cell Line	embryonic stem cell
13	chr4:8556000-8556600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
14	chr4:8556000-8556600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
15	chr4:8556000-8556800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr4:8556200-8558200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr4:8556400-8556800	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr4:8556600-8556800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr4:8556600-8558600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr4:8556800-8558200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
21	chr4:8556800-8562000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr4:8556800-8562800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
23	chr4:8557200-8558000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr4:8557600-8562000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr4:8558000-8558200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
26	chr4:8558000-8558600	Enhancers	Osteobl	bone
27	chr4:8558000-8558800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr4:8558000-8559000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr4:8558000-8559000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr4:8558000-8560600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr4:8558000-8560600	Enhancers	HSMMtube	muscle
32	chr4:8558000-8560800	Enhancers	NHDF-Ad	bronchial
33	chr4:8558200-8558600	Enhancers	ES-I3 Cell Line	embryonic stem cell
34	chr4:8558200-8558600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr4:8558200-8558600	Enhancers	NHLF	lung
36	chr4:8558200-8559200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
37	chr4:8558200-8560400	Enhancers	HSMM	muscle
38	chr4:8558200-8560800	Enhancers	Muscle Satellite Cultured Cells	--
39	chr4:8558600-8559800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
40	chr4:8558600-8560000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
41	chr4:8558600-8560200	Weak transcription	Osteobl	bone
42	chr4:8558800-8559800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
43	chr4:8559000-8559200	Enhancers	A549	lung
44	chr4:8559000-8560000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
45	chr4:8559000-8562200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
46	chr4:8559200-8560000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
47	chr4:8559200-8562200	Weak transcription	A549	lung
48	chr4:8559800-8560000	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin01	Skin
49	chr4:8559800-8560400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
50	chr4:8559800-8560400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links