Variant report
Variant | nsv878624 |
---|---|
Chromosome Location | chr4:8656976-9371116 |
allele | n/a |
Outlinks | Ensembl   UCSC |
- TF binding region (count:4567)
- CpG islands (count:1343)
- Chromatin interactive region (count:116)
- LncRNA region (count:23)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
---|---|---|---|---|---|---|
1 | ARID3A | chr4:9154835-9154872 | HepG2 | liver: | n/a | n/a |
2 | ARID3A | chr4:9155684-9155703 | HepG2 | liver: | n/a | n/a |
3 | ATF1 | chr4:9154438-9155046 | K562 | blood: | n/a | n/a |
4 | ATF3 | chr4:8854977-8855363 | H1-hESC | embryonic stem cell: | n/a | n/a |
5 | ATF3 | chr4:9154337-9154466 | K562 | blood: | n/a | n/a |
6 | ATF3 | chr4:8854995-8855309 | H1-hESC | embryonic stem cell: | n/a | n/a |
7 | ATF3 | chr4:8855081-8855244 | K562 | blood: | n/a | n/a |
8 | BACH1 | chr4:8894725-8895016 | H1-hESC | embryonic stem cell: | n/a | n/a |
9 | BACH1 | chr4:8862268-8862627 | H1-hESC | embryonic stem cell: | n/a | n/a |
10 | BACH1 | chr4:8689946-8690325 | H1-hESC | embryonic stem cell: | n/a | n/a |
11 | BACH1 | chr4:8857031-8857091 | H1-hESC | embryonic stem cell: | n/a | n/a |
12 | BACH1 | chr4:8893693-8893726 | H1-hESC | embryonic stem cell: | n/a | n/a |
13 | BACH1 | chr4:8857632-8857756 | H1-hESC | embryonic stem cell: | n/a | n/a |
14 | BACH1 | chr4:8874989-8875170 | H1-hESC | embryonic stem cell: | n/a | n/a |
15 | BACH1 | chr4:8861399-8861529 | H1-hESC | embryonic stem cell: | n/a | n/a |
16 | BACH1 | chr4:8862941-8863709 | H1-hESC | embryonic stem cell: | n/a | n/a |
17 | BACH1 | chr4:8859610-8859971 | H1-hESC | embryonic stem cell: | n/a | n/a |
18 | BACH1 | chr4:8858777-8858889 | H1-hESC | embryonic stem cell: | n/a | n/a |
19 | BACH1 | chr4:8869917-8869990 | H1-hESC | embryonic stem cell: | n/a | n/a |
20 | BACH1 | chr4:8875855-8875971 | H1-hESC | embryonic stem cell: | n/a | n/a |
21 | BACH1 | chr4:8686570-8686574 | H1-hESC | embryonic stem cell: | n/a | n/a |
22 | BACH1 | chr4:8873787-8873987 | H1-hESC | embryonic stem cell: | n/a | n/a |
23 | BATF | chr4:9019180-9019377 | GM12878 | blood: | n/a | n/a |
24 | BATF | chr4:9155849-9156145 | GM12878 | blood: | n/a | n/a |
25 | BATF | chr4:9069049-9069339 | GM12878 | blood: | n/a | n/a |
26 | BATF | chr4:9075036-9075407 | GM12878 | blood: | n/a | n/a |
27 | BATF | chr4:9016052-9016284 | GM12878 | blood: | n/a | chr4:9016178-9016189 |
28 | BATF | chr4:9167731-9168069 | GM12878 | blood: | n/a | n/a |
29 | BATF | chr4:9125270-9125602 | GM12878 | blood: | n/a | n/a |
30 | BATF | chr4:8947322-8947571 | GM12878 | blood: | n/a | chr4:8947446-8947457 |
31 | BATF | chr4:9172276-9172654 | GM12878 | blood: | n/a | n/a |
32 | BATF | chr4:9167836-9168045 | GM12878 | blood: | n/a | n/a |
33 | BATF | chr4:9078511-9078942 | GM12878 | blood: | n/a | n/a |
34 | BATF | chr4:8962972-8963416 | GM12878 | blood: | n/a | n/a |
35 | BATF | chr4:9050779-9051110 | GM12878 | blood: | n/a | n/a |
36 | BATF | chr4:9027943-9028103 | GM12878 | blood: | n/a | n/a |
37 | BATF | chr4:8877064-8877233 | GM12878 | blood: | n/a | chr4:8877125-8877134 |
38 | BATF | chr4:9027580-9027939 | GM12878 | blood: | n/a | n/a |
39 | BATF | chr4:9074518-9074764 | GM12878 | blood: | n/a | n/a |
40 | BATF | chr4:9075010-9075406 | GM12878 | blood: | n/a | n/a |
41 | BATF | chr4:8977979-8978183 | GM12878 | blood: | n/a | n/a |
42 | BATF | chr4:9170428-9170639 | GM12878 | blood: | n/a | n/a |
43 | BATF | chr4:8947373-8947544 | GM12878 | blood: | n/a | chr4:8947446-8947457 |
44 | BATF | chr4:9078532-9078952 | GM12878 | blood: | n/a | n/a |
45 | BATF | chr4:9059496-9059973 | GM12878 | blood: | n/a | n/a |
46 | BATF | chr4:9155872-9156200 | GM12878 | blood: | n/a | n/a |
47 | BATF | chr4:9160170-9160447 | GM12878 | blood: | n/a | n/a |
48 | BATF | chr4:9050852-9051138 | GM12878 | blood: | n/a | n/a |
49 | BATF | chr4:9172306-9172654 | GM12878 | blood: | n/a | n/a |
50 | BATF | chr4:8911262-8911579 | GM12878 | blood: | n/a | n/a |
No. | Chromosome Location | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr4:8689975-8690025 | GM12892 | blood: | n/a |
2 | chr4:8689975-8690025 | GM12892 | blood: | n/a |
3 | chr4:8687955-8688005 | PFSK-1 | brain: | n/a |
4 | chr4:8702535-8702585 | NB4 | blood: | n/a |
5 | chr4:8690489-8690539 | SK-N-SH | brain: | n/a |
6 | chr4:8687039-8687089 | T-47D | breast: | n/a |
7 | chr4:8702397-8702447 | HCPEpiC | choroid plexus: | n/a |
8 | chr4:8689852-8689902 | AoSMC | blood vessel: | n/a |
9 | chr4:9355351-9355401 | HEEpiC | esophagus: | n/a |
10 | chr4:8689975-8690025 | CMK | blood: | n/a |
11 | chr4:8689975-8690025 | AG09309 | skin: | n/a |
12 | chr4:8687039-8687089 | RPTEC | kidney: | n/a |
13 | chr4:8690035-8690085 | SKMC | muscle: | n/a |
14 | chr4:9355351-9355401 | Caco-2 | colon: | n/a |
15 | chr4:8666871-8666921 | Hela-S3 | cervix: | n/a |
16 | chr4:9352827-9352877 | AoSMC | blood vessel: | n/a |
17 | chr4:8687039-8687089 | LNCaP | prostate: | n/a |
18 | chr4:8687039-8687089 | CMK | blood: | n/a |
19 | chr4:8693400-8693450 | CMK | blood: | n/a |
20 | chr4:9352827-9352877 | AG09309 | skin: | n/a |
21 | chr4:8687955-8688005 | HEK293 | kidney: | embryo |
22 | chr4:8689975-8690025 | BJ | skin: | n/a |
23 | chr4:8687039-8687089 | AG09309 | skin: | n/a |
24 | chr4:8689852-8689902 | T-47D | breast: | n/a |
25 | chr4:9355372-9355422 | HCF | heart: | n/a |
26 | chr4:9355351-9355401 | GM06990 | blood: | n/a |
27 | chr4:8702475-8702525 | RPTEC | kidney: | n/a |
28 | chr4:8702475-8702525 | U87 | brain: | n/a |
29 | chr4:8696173-8696223 | Hepatocyte | liver: | n/a |
30 | chr4:8702279-8702329 | Hepatocyte | liver: | n/a |
31 | chr4:8692854-8692904 | BE2_C | brain: | n/a |
32 | chr4:8702279-8702329 | NHBE | bronchial: | n/a |
33 | chr4:8666871-8666921 | NHBE | bronchial: | n/a |
34 | chr4:8696173-8696223 | HRCEpiC | kidney: | n/a |
35 | chr4:8687039-8687089 | NT2-D1 | testis: | n/a |
36 | chr4:8692935-8692985 | HRPEpiC | eye: | n/a |
37 | chr4:8693400-8693450 | AG04449 | skin: | fetal |
38 | chr4:8693400-8693450 | Jurkat | blood: | n/a |
39 | chr4:8696173-8696223 | GM12892 | blood: | n/a |
40 | chr4:8666871-8666921 | NHDF-neo | bronchial: | n/a |
41 | chr4:8692854-8692904 | GM19239 | blood: | n/a |
42 | chr4:8702279-8702329 | SK-N-SH | brain: | n/a |
43 | chr4:8702535-8702585 | HCT-116 | colon: | n/a |
44 | chr4:8696173-8696223 | K562 | blood: | n/a |
45 | chr4:9352827-9352877 | GM19239 | blood: | n/a |
46 | chr4:8692854-8692904 | SK-N-SH_RA | brain: | n/a |
47 | chr4:8666871-8666921 | HEEpiC | esophagus: | n/a |
48 | chr4:8727474-8727524 | AG09309 | skin: | n/a |
49 | chr4:8702397-8702447 | CMK | blood: | n/a |
50 | chr4:8692935-8692985 | SAEC | small airway: | n/a |
No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr4:8667609..8668516-chr4:8887656..8888210,2 | MCF-7 | breast: | |
2 | chr4:8689272..8690551-chr4:8887541..8888216,4 | MCF-7 | breast: | |
3 | chr4:8854005..8855600-chr4:8858236..8860977,2 | MCF-7 | breast: | |
4 | chr4:8841775..8843355-chr4:8852105..8854658,2 | MCF-7 | breast: | |
5 | chr4:8781022..8782784-chr4:8786066..8789038,2 | K562 | blood: | |
6 | chr4:8887461..8890172-chr4:8891389..8893910,2 | MCF-7 | breast: | |
7 | chr4:8689272..8690551-chr4:8887541..8888216,4 | MCF-7 | breast: | |
8 | chr4:8720313..8722738-chr4:8763583..8766332,2 | MCF-7 | breast: | |
9 | chr4:8709792..8713378-chr4:8726638..8730577,3 | K562 | blood: | |
10 | chr4:8847923..8849486-chr4:8849539..8851969,2 | K562 | blood: | |
11 | chr4:8871272..8873108-chr4:8879640..8882009,2 | MCF-7 | breast: | |
12 | chr4:8778847..8780683-chr4:8898052..8900103,2 | MCF-7 | breast: | |
13 | chr4:8690025..8690993-chr4:8919534..8920174,2 | MCF-7 | breast: | |
14 | chr4:8723681..8726595-chr4:8727045..8729022,2 | MCF-7 | breast: | |
15 | chr4:8690025..8690993-chr4:8919534..8920174,2 | MCF-7 | breast: | |
16 | chr4:8727792..8729635-chr4:8777761..8780174,2 | MCF-7 | breast: | |
17 | chr4:8743350..8745103-chr4:8747922..8749875,2 | MCF-7 | breast: | |
18 | chr4:8887461..8890172-chr4:8891389..8893910,2 | MCF-7 | breast: | |
19 | chr4:8785973..8787809-chr4:8789851..8791798,2 | MCF-7 | breast: | |
20 | chr4:8987440..8989215-chr4:9123032..9125625,2 | MCF-7 | breast: | |
21 | chr4:8781022..8782784-chr4:8786066..8789038,2 | K562 | blood: | |
22 | chr4:9155081..9155863-chr4:79696788..79697581,2 | HCT-116 | colon: | |
23 | chr4:8707817..8709520-chr4:8713049..8714741,2 | MCF-7 | breast: | |
24 | chr4:8917493..8920418-chr4:8922098..8924605,3 | K562 | blood: | |
25 | chr4:8778847..8780683-chr4:8898052..8900103,2 | MCF-7 | breast: | |
26 | chr4:8654425..8657330-chr7:61967859..61969474,2 | MCF-7 | breast: | |
27 | chr4:8722609..8725304-chr4:8746886..8749545,2 | MCF-7 | breast: | |
28 | chr4:8689949..8690495-chr4:8884145..8884993,2 | MCF-7 | breast: | |
29 | chr4:8709795..8712592-chr4:8714328..8716618,2 | MCF-7 | breast: | |
30 | chr4:8738768..8740939-chr4:8744102..8745703,2 | MCF-7 | breast: | |
31 | chr4:8667609..8668516-chr4:8887656..8888210,2 | MCF-7 | breast: | |
32 | chr4:8827560..8829523-chr4:8830683..8833064,2 | K562 | blood: | |
33 | chr4:8732091..8733640-chr4:8882099..8884528,2 | MCF-7 | breast: | |
34 | chr4:8875731..8878681-chr4:8880679..8882236,2 | K562 | blood: | |
35 | chr4:8728690..8730772-chr4:10106539..10108201,2 | K562 | blood: | |
36 | chr4:8483492..8484345-chr4:8919742..8920371,2 | MCF-7 | breast: | |
37 | chr4:8707817..8709520-chr4:8713049..8714741,2 | MCF-7 | breast: | |
38 | chr4:8889120..8890631-chr4:8897595..8899572,2 | MCF-7 | breast: | |
39 | chr4:8677416..8680217-chr4:8770931..8773550,2 | K562 | blood: | |
40 | chr4:8442251..8443878-chr4:8907020..8909362,2 | MCF-7 | breast: | |
41 | chr4:8836102..8838665-chr4:8853304..8855667,2 | MCF-7 | breast: | |
42 | chr4:8836102..8838665-chr4:8853304..8855667,2 | MCF-7 | breast: | |
43 | chr4:8847923..8849486-chr4:8849539..8851969,2 | K562 | blood: | |
44 | chr4:8732091..8733640-chr4:8882099..8884528,2 | MCF-7 | breast: | |
45 | chr4:8850333..8852547-chr4:8858670..8860391,2 | MCF-7 | breast: | |
46 | chr4:8916094..8919081-chr4:8922098..8925711,3 | K562 | blood: | |
47 | chr4:8852857..8854871-chr4:8860134..8862966,2 | K562 | blood: | |
48 | chr4:8874973..8877231-chr4:8879936..8882236,2 | K562 | blood: | |
49 | chr4:8709792..8713378-chr4:8726638..8730577,3 | K562 | blood: | |
50 | chr4:8649831..8652641-chr4:8656604..8658458,2 | K562 | blood: |
(count:23 , 50 per page) page:
1
No. | lncRNA name | Chromosome Location | lncRNA alias |
---|---|---|---|
1 | lnc-HMX1-4 | chr4:9036310-9037271 | NONHSAT095124 |
2 | lnc-HMX1-4 | chr4:9065968-9066056 | NONHSAT095123 |
3 | lnc-ACOX3-3 | chr4:8860441-8860823 | ENSG00000258507.1 |
4 | lnc-HMX1-1 | chr4:8749072-8749394 | NONHSAT095114 |
5 | lnc-HMX1-4 | chr4:9036251-9037271 | NONHSAT095123 |
6 | lnc-HMX1-4 | chr4:9083355-9083373 | NONHSAT095123 |
7 | lnc-RP11-1286E23.8.1-1 | chr4:9173538-9173895 | XLOC_003448 |
8 | lnc-HMX1-1 | chr4:8747672-8747863 | NONHSAT095113 |
9 | lnc-HMX1-1 | chr4:8747165-8747482 | NONHSAT095114 |
10 | lnc-HMX1-1 | chr4:8747123-8747482 | ENSG00000250915 |
11 | lnc-HMX1-4 | chr4:9036251-9037271 | NONHSAT095122 |
12 | lnc-RP11-1286E23.8.1-1 | chr4:9174843-9174908 | XLOC_003448 |
13 | lnc-ACOX3-3 | chr4:8862375-8862553 | ENSG00000258507.1 |
14 | lnc-HMX1-1 | chr4:8749072-8749394 | NONHSAT095113 |
15 | lnc-HMX1-4 | chr4:9065968-9066056 | NONHSAT095124 |
16 | lnc-HMX1-3 | chr4:9053568-9053777 | NONHSAT095125 |
17 | lnc-HMX1-4 | chr4:9065968-9066056 | NONHSAT095122 |
18 | lnc-HMX1-2 | chr4:9022583-9022887 | NONHSAT095120 |
19 | lnc-HMX1-4 | chr4:9072963-9073140 | NONHSAT095124 |
20 | lnc-HMX1-4 | chr4:9074628-9074691 | NONHSAT095122 |
21 | lnc-HMX1-1 | chr4:8747165-8747482 | NONHSAT095113 |
22 | lnc-HMX1-1 | chr4:8747656-8747863 | NONHSAT095114 |
23 | lnc-HMX1-1 | chr4:8747656-8747759 | ENSG00000250915 |
No data |
No data |
Variant related genes | Relation type |
---|---|
USP17L11 | TF binding region |
USP17L22 | TF binding region |
ENSG00000264372 | TF binding region |
ENSG00000250804 | TF binding region |
ENSG00000197468 | TF binding region |
USP17L19 | TF binding region |
USP17L9P | TF binding region |
USP17L5 | TF binding region |
ALG1L14P | TF binding region |
USP17L10 | TF binding region |
FAM90A26 | TF binding region |
USP17L17 | TF binding region |
USP17L15 | TF binding region |
USP17L26 | TF binding region |
USP17L23 | TF binding region |
USP17L25 | TF binding region |
USP17L6P | TF binding region |
USP17L27 | TF binding region |
USP17L20 | TF binding region |
FAM86KP | TF binding region |
ENSG00000258507 | TF binding region |
USP17L18 | TF binding region |
ENSG00000250342 | TF binding region |
ENSG00000271057 | TF binding region |
ENSG00000251313 | TF binding region |
USP17L24 | TF binding region |
USP17L29 | TF binding region |
USP17L13 | TF binding region |
HMX1 | TF binding region |
USP17L14P | TF binding region |
USP17L12 | TF binding region |
ENSG00000238726 | TF binding region |
UNC93B8 | TF binding region |
USP17L30 | TF binding region |
ENSG00000250915 | TF binding region |
USP17L16P | TF binding region |
ENPP7P10 | TF binding region |
USP17L21 | TF binding region |
ENSG00000249347 | TF binding region |
USP17L28 | TF binding region |
USP17L11 | CpG island |
USP17L22 | CpG island |
ENSG00000264372 | CpG island |
ENSG00000250804 | CpG island |
ENSG00000197468 | CpG island |
USP17L19 | CpG island |
USP17L9P | CpG island |
USP17L5 | CpG island |
ALG1L14P | CpG island |
USP17L10 | CpG island |
FAM90A26 | CpG island |
USP17L17 | CpG island |
USP17L15 | CpG island |
USP17L26 | CpG island |
USP17L23 | CpG island |
USP17L25 | CpG island |
USP17L6P | CpG island |
USP17L27 | CpG island |
USP17L20 | CpG island |
FAM86KP | CpG island |
ENSG00000258507 | CpG island |
USP17L18 | CpG island |
ENSG00000250342 | CpG island |
ENSG00000271057 | CpG island |
ENSG00000251313 | CpG island |
USP17L24 | CpG island |
USP17L29 | CpG island |
USP17L13 | CpG island |
HMX1 | CpG island |
USP17L14P | CpG island |
USP17L12 | CpG island |
ENSG00000238726 | CpG island |
UNC93B8 | CpG island |
USP17L30 | CpG island |
ENSG00000250915 | CpG island |
USP17L16P | CpG island |
ENPP7P10 | CpG island |
USP17L21 | CpG island |
ENSG00000249347 | CpG island |
USP17L28 | CpG island |
ENSG00000071127 | chromatin interactions |
ENSG00000205959 | chromatin interactions |
ENSG00000260278 | chromatin interactions |
ENSG00000087008 | chromatin interactions |
ENSG00000155275 | chromatin interactions |
ENSG00000170142 | chromatin interactions |
ENSG00000258507 | chromatin interactions |
ENSG00000250915 | chromatin interactions |
ENSG00000138756 | chromatin interactions |
No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | rs12511120 | chr4:8656976-8656977 | Weak transcription | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
2 | rs557534904 | chr4:8656994-8656995 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
3 | rs575809405 | chr4:8657030-8657031 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
4 | rs75216143 | chr4:8657054-8657055 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
5 | rs59229016 | chr4:8657056-8657057 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
6 | rs182202149 | chr4:8657073-8657074 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
7 | rs112623262 | chr4:8657104-8657105 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
8 | rs559205643 | chr4:8657120-8657121 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
9 | rs375963938 | chr4:8657156-8657157 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
10 | rs529683442 | chr4:8657176-8657177 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
11 | rs547780431 | chr4:8657188-8657189 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
12 | rs370859454 | chr4:8657216-8657217 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
13 | rs112530068 | chr4:8657233-8657234 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
14 | rs373081375 | chr4:8657265-8657266 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
15 | rs552217446 | chr4:8657292-8657293 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
16 | rs80052843 | chr4:8657294-8657295 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
17 | rs139118698 | chr4:8657320-8657321 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
18 | rs547353975 | chr4:8657325-8657326 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
19 | rs186762078 | chr4:8657328-8657329 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
20 | rs71635970 | chr4:8657343-8657344 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
21 | rs12511251 | chr4:8657344-8657345 | Weak transcription | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
22 | rs575556875 | chr4:8657357-8657358 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
23 | rs114324119 | chr4:8657396-8657397 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
24 | rs558210504 | chr4:8657407-8657408 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
25 | rs576997460 | chr4:8657412-8657413 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
26 | rs540816026 | chr4:8657413-8657414 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
27 | rs559269770 | chr4:8657419-8657420 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
28 | rs190842028 | chr4:8657420-8657421 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
29 | rs567892071 | chr4:8657447-8657448 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
30 | rs183348675 | chr4:8657475-8657476 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
31 | rs188179339 | chr4:8657482-8657483 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
32 | rs531858343 | chr4:8657501-8657502 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
33 | rs550078177 | chr4:8657555-8657556 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
34 | rs143969936 | chr4:8657558-8657559 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
35 | rs73800340 | chr4:8657600-8657601 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
36 | rs528724904 | chr4:8657671-8657672 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
37 | rs547216285 | chr4:8657693-8657694 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
38 | rs6817709 | chr4:8657711-8657712 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
39 | rs529627348 | chr4:8657720-8657721 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
40 | rs551267255 | chr4:8657737-8657738 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
41 | rs193162159 | chr4:8657768-8657769 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
42 | rs185311698 | chr4:8657782-8657783 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
43 | rs151012689 | chr4:8657803-8657804 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
44 | rs558009096 | chr4:8657809-8657810 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
45 | rs370629120 | chr4:8657812-8657813 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
46 | rs566954754 | chr4:8657814-8657815 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
47 | rs533984775 | chr4:8657815-8657816 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
48 | rs139597730 | chr4:8657834-8657835 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
49 | rs574259187 | chr4:8657855-8657856 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
50 | rs541746660 | chr4:8657856-8657857 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
Disease | PMID | Source |
---|---|---|
Melanoma | 20688739 | CNVD |
Wilms tumour | 21544195 | CNVD |
Colorectal cancer | 16272173 | CNVD |
Non-syndromic sensorineural hearing loss | 20606397 | CNVD |
Oral squamous cell carcinoma | 17134496 | CNVD |
Basal cell lymphoma | 16317097 | CNVD |
Diffuse large b-cell lymphoma | 16317097 | CNVD |
Breast cancer | 17603634 | CNVD |
Chronic lymphocytic leukemia | 21546498 | CNVD |
Medulloblastoma | 21979893 | CNVD |
Basal cell lymphoma | 17053054 | CNVD |
Colorectal cancer | 19359472 | CNVD |
Neuroblastoma | 17533364 | CNVD |
head and neck squamous cell carcinoma | 17671120 | CNVD |
Cancer | 21637783 | CNVD |
Melanoma | 21693616 | CNVD |
Squamous cell cancer | 21044232 | CNVD |
Colorectal cancer | 20709793 | CNVD |
Esophageal squamous carcinoma | 21637470 | CNVD |
Non-small cell lung cancer | 21044232 | CNVD |
Ewing''s sarcoma | 21437220 | CNVD |
Glioblastoma multiforme | 17387387 | CNVD |
Endometrial cancer | 22040021 | CNVD |
Breast cancer | 21264507 | CNVD |
Glioblastoma multiforme | 19960244 | CNVD |
Cervical cancer | 21062161 | CNVD |
Gastrointestinal stromal cancer | 16982739 | CNVD |
Acute lymphoblastic leukemia | 22237106 | CNVD |
Glioblastoma multiforme | 21080181 | CNVD |
Chordoma | 21602918 | CNVD |
HIV/AIDS | 22032296 | CNVD |
Neuroblastoma | 18923191 | CNVD |
small cell lung cancer | 20016488 | CNVD |
T-cell prolymphocytic leukemia | 19278963 | CNVD |
Hodgkin''s lymphoma | 17606441 | CNVD |
Prostate cancer | 18632612 | CNVD |
Thoracic aortic aneurysm | 21092924 | CNVD |
Intellectual disability | 22102821 | CNVD |
Autism | 22495311 | CNVD |
Breast cancer | 21785460 | CNVD |
Chronic lymphocytic leukemia | 20421269 | CNVD |
Breast cancer | 21509527 | CNVD |
Lung cancer | 18438408 | CNVD |
Urothelial carcinoma | 21177765 | CNVD |
Myelofibrosis | 22110671 | CNVD |
Hirschsprung''s Disease | 21712996 | CNVD |
Schizophrenia | 22241247 | CNVD |
Autosomal-dominant microtia | 18179897 | CNVD |
Glioma | 17123091 | CNVD |
Colorectal cancer | 20459617 | CNVD |
Breast cancer | 17133270 | CNVD |
Sezary syndrome | 18413736 | CNVD |
Pancreatic ductal adenocarcinoma | 19077451 | CNVD |
Schizophrenia | 21346763 | CNVD |
Non-syndromic sensorineural hearing loss | 18451855 | CNVD |
Non-syndromic sensorineural hearing loss | 17122850 | CNVD |
Breast cancer | 22522925 | CNVD |
Ependymoma | 20639864 | CNVD |
Pancreatic cancer | 17952125 | CNVD |
Schizophrenia | 23813976 | CNVD |
Non-syndromic sensorineural hearing loss | 22037309 | CNVD |
Non-syndromic sensorineural hearing loss | 21030649 | CNVD |
Autism | 21865298 | CNVD |
early-passage human iPS cells | 21368824 | CNVD |
Schizophrenia | 20967226 | CNVD |
Non-syndromic sensorineural hearing loss | 19587683 | CNVD |
Ovarian clear cell carcinoma | 21343371 | CNVD |
Non-syndromic sensorineural hearing loss | 21293372 | CNVD |
Bipolar disorder | 19114987 | CNVD |
Breast cancer | 21858162 | CNVD |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr4:8655600-8665800 | Weak transcription | iPS DF 19.11 Cell Line | embryonic stem cell |
2 | chr4:8659600-8660200 | Enhancers | H1 BMP4 Derived Trophoblast Cultured Cells | ES cell derived |
3 | chr4:8662400-8662800 | Enhancers | ES-I3 Cell Line | embryonic stem cell |
4 | chr4:8662800-8666000 | Weak transcription | ES-I3 Cell Line | embryonic stem cell |
5 | chr4:8665800-8666400 | Enhancers | iPS DF 6.9 Cell Line | embryonic stem cell |
6 | chr4:8665800-8666600 | Enhancers | iPS DF 19.11 Cell Line | embryonic stem cell |
7 | chr4:8665800-8667000 | Enhancers | H1 Cell Line | embryonic stem cell |
8 | chr4:8665800-8667200 | Enhancers | ES-UCSF4 Cell Line | embryonic stem cell |
9 | chr4:8666000-8666600 | Enhancers | ES-WA7 Cell Line | embryonic stem cell |
10 | chr4:8666000-8666600 | Enhancers | H9 Cell Line | embryonic stem cell |
11 | chr4:8666000-8666600 | Enhancers | HUES48 Cell Line | embryonic stem cell |
12 | chr4:8666000-8666600 | Bivalent Enhancer | HUES6 Cell Line | embryonic stem cell |
13 | chr4:8666000-8666800 | Enhancers | HUES64 Cell Line | embryonic stem cell |
14 | chr4:8666000-8666800 | Enhancers | iPS-18 Cell Line | embryonic stem cell |
15 | chr4:8666000-8667800 | Enhancers | ES-I3 Cell Line | embryonic stem cell |
16 | chr4:8666200-8666600 | Bivalent Enhancer | iPS-20b Cell Line | embryonic stem cell |
17 | chr4:8666600-8666800 | Bivalent Enhancer | HUES48 Cell Line | embryonic stem cell |
18 | chr4:8666600-8667200 | Weak transcription | iPS DF 19.11 Cell Line | embryonic stem cell |
19 | chr4:8666800-8667000 | Bivalent Enhancer | iPS-18 Cell Line | embryonic stem cell |
20 | chr4:8667000-8667200 | Bivalent Enhancer | H1 Cell Line | embryonic stem cell |
21 | chr4:8667200-8667400 | Enhancers | iPS DF 19.11 Cell Line | embryonic stem cell |
22 | chr4:8667200-8667600 | Enhancers | Foreskin Keratinocyte Primary Cells skin02 | Skin |
23 | chr4:8674400-8674600 | Enhancers | iPS DF 19.11 Cell Line | embryonic stem cell |
24 | chr4:8676200-8676600 | Enhancers | Brain Anterior Caudate | brain |
25 | chr4:8676600-8676800 | Bivalent Enhancer | Fetal Muscle Trunk | muscle |
26 | chr4:8676800-8677600 | Enhancers | iPS DF 19.11 Cell Line | embryonic stem cell |
27 | chr4:8677000-8677600 | Enhancers | ES-I3 Cell Line | embryonic stem cell |
28 | chr4:8677000-8677600 | Bivalent Enhancer | HUES6 Cell Line | embryonic stem cell |
29 | chr4:8677000-8677600 | Enhancers | iPS-15b Cell Line | embryonic stem cell |
30 | chr4:8681600-8682200 | Bivalent Enhancer | iPS DF 19.11 Cell Line | embryonic stem cell |
31 | chr4:8683200-8685200 | Enhancers | Left Ventricle | heart |
32 | chr4:8684400-8684600 | Bivalent Enhancer | iPS DF 19.11 Cell Line | embryonic stem cell |
33 | chr4:8684400-8684600 | Bivalent Enhancer | Adipose Nuclei | Adipose |
34 | chr4:8684400-8685000 | Bivalent Enhancer | Fetal Muscle Trunk | muscle |
35 | chr4:8684800-8685000 | Bivalent Enhancer | Fetal Muscle Leg | muscle |
36 | chr4:8686600-8694200 | Weak transcription | Right Atrium | heart |
37 | chr4:8687800-8689000 | Bivalent Enhancer | Right Ventricle | heart |
38 | chr4:8688200-8688400 | Weak transcription | Gastric | stomach |
39 | chr4:8688400-8688600 | Enhancers | Gastric | stomach |
40 | chr4:8688400-8688800 | ZNF genes & repeats | H1 BMP4 Derived Trophoblast Cultured Cells | ES cell derived |
41 | chr4:8688400-8689000 | Active TSS | H1 Derived Neuronal Progenitor Cultured Cells | ES cell derived |
42 | chr4:8688600-8688800 | Flanking Bivalent TSS/Enh | iPS DF 19.11 Cell Line | embryonic stem cell |
43 | chr4:8688600-8689000 | ZNF genes & repeats | H1 Derived Mesenchymal Stem Cells | ES cell derived |
44 | chr4:8688600-8689000 | Bivalent Enhancer | iPS DF 6.9 Cell Line | embryonic stem cell |
45 | chr4:8688600-8689000 | Bivalent/Poised TSS | Breast Myoepithelial Primary Cells | Breast |
46 | chr4:8688600-8689000 | Bivalent/Poised TSS | Fetal Kidney | kidney |
47 | chr4:8688600-8689000 | Flanking Active TSS | Gastric | stomach |
48 | chr4:8688600-8689000 | Enhancers | K562 | blood |
49 | chr4:8688600-8689200 | ZNF genes & repeats | ES-UCSF4 Cell Line | embryonic stem cell |
50 | chr4:8688800-8689000 | Bivalent Enhancer | H1 BMP4 Derived Trophoblast Cultured Cells | ES cell derived |