Variant report

Variant	nsv878628
Chromosome Location	chr4:8729638-9486579
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:4511)
CpG islands
(count:2016)
Chromatin interactive
region (count:86)
LncRNA
region (count:29)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:4511 , 50 per page) page: 1 2 3 4 5 6 7 ... 91

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr4:9154835-9154872	HepG2	liver:	n/a	n/a
2	ARID3A	chr4:9155684-9155703	HepG2	liver:	n/a	n/a
3	ARID3A	chr4:9454189-9454353	HepG2	liver:	n/a	n/a
4	ATF1	chr4:9154438-9155046	K562	blood:	n/a	n/a
5	ATF3	chr4:8855081-8855244	K562	blood:	n/a	n/a
6	ATF3	chr4:9154337-9154466	K562	blood:	n/a	n/a
7	ATF3	chr4:8854995-8855309	H1-hESC	embryonic stem cell:	n/a	n/a
8	ATF3	chr4:8854977-8855363	H1-hESC	embryonic stem cell:	n/a	n/a
9	BACH1	chr4:8869917-8869990	H1-hESC	embryonic stem cell:	n/a	n/a
10	BACH1	chr4:8862268-8862627	H1-hESC	embryonic stem cell:	n/a	n/a
11	BACH1	chr4:8859610-8859971	H1-hESC	embryonic stem cell:	n/a	n/a
12	BACH1	chr4:8873787-8873987	H1-hESC	embryonic stem cell:	n/a	n/a
13	BACH1	chr4:8861399-8861529	H1-hESC	embryonic stem cell:	n/a	n/a
14	BACH1	chr4:8874989-8875170	H1-hESC	embryonic stem cell:	n/a	n/a
15	BACH1	chr4:8862941-8863709	H1-hESC	embryonic stem cell:	n/a	n/a
16	BACH1	chr4:8857031-8857091	H1-hESC	embryonic stem cell:	n/a	n/a
17	BACH1	chr4:8875855-8875971	H1-hESC	embryonic stem cell:	n/a	n/a
18	BACH1	chr4:8857632-8857756	H1-hESC	embryonic stem cell:	n/a	n/a
19	BACH1	chr4:8893693-8893726	H1-hESC	embryonic stem cell:	n/a	n/a
20	BACH1	chr4:8894725-8895016	H1-hESC	embryonic stem cell:	n/a	n/a
21	BACH1	chr4:8858777-8858889	H1-hESC	embryonic stem cell:	n/a	n/a
22	BATF	chr4:9078532-9078952	GM12878	blood:	n/a	n/a
23	BATF	chr4:9069049-9069339	GM12878	blood:	n/a	n/a
24	BATF	chr4:9170428-9170639	GM12878	blood:	n/a	n/a
25	BATF	chr4:9078511-9078942	GM12878	blood:	n/a	n/a
26	BATF	chr4:9059496-9059973	GM12878	blood:	n/a	n/a
27	BATF	chr4:9160170-9160447	GM12878	blood:	n/a	n/a
28	BATF	chr4:9481131-9481403	GM12878	blood:	n/a	n/a
29	BATF	chr4:8977979-8978183	GM12878	blood:	n/a	n/a
30	BATF	chr4:9019180-9019377	GM12878	blood:	n/a	n/a
31	BATF	chr4:9016052-9016284	GM12878	blood:	n/a	chr4:9016178-9016189
32	BATF	chr4:8947322-8947571	GM12878	blood:	n/a	chr4:8947446-8947457
33	BATF	chr4:9172276-9172654	GM12878	blood:	n/a	n/a
34	BATF	chr4:9155377-9155748	GM12878	blood:	n/a	n/a
35	BATF	chr4:9125270-9125602	GM12878	blood:	n/a	n/a
36	BATF	chr4:8947373-8947544	GM12878	blood:	n/a	chr4:8947446-8947457
37	BATF	chr4:9074518-9074764	GM12878	blood:	n/a	n/a
38	BATF	chr4:9027943-9028103	GM12878	blood:	n/a	n/a
39	BATF	chr4:8877064-8877233	GM12878	blood:	n/a	chr4:8877125-8877134
40	BATF	chr4:9050852-9051138	GM12878	blood:	n/a	n/a
41	BATF	chr4:9456872-9457051	GM12878	blood:	n/a	n/a
42	BATF	chr4:9390689-9391024	GM12878	blood:	n/a	n/a
43	BATF	chr4:8962972-8963416	GM12878	blood:	n/a	n/a
44	BATF	chr4:9027584-9027898	GM12878	blood:	n/a	n/a
45	BATF	chr4:9167836-9168045	GM12878	blood:	n/a	n/a
46	BATF	chr4:9075036-9075407	GM12878	blood:	n/a	n/a
47	BATF	chr4:9027580-9027939	GM12878	blood:	n/a	n/a
48	BATF	chr4:9481132-9481453	GM12878	blood:	n/a	n/a
49	BATF	chr4:9155872-9156200	GM12878	blood:	n/a	n/a
50	BATF	chr4:9172306-9172654	GM12878	blood:	n/a	n/a

(count:2016 , 50 per page) page: 1 2 3 4 5 6 7 ... 41

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr4:9371043-9371093	HIPEpiC	eye:	n/a
2	chr4:9478065-9478115	BJ	skin:	n/a
3	chr4:9485487-9485537	NHBE	bronchial:	n/a
4	chr4:9371043-9371093	HIPEpiC	eye:	n/a
5	chr4:9478065-9478115	BJ	skin:	n/a
6	chr4:9485487-9485537	NHBE	bronchial:	n/a
7	chr4:9482074-9482124	SK-N-MC	brain:	n/a
8	chr4:9479622-9479672	HL-60	blood:	n/a
9	chr4:9355351-9355401	HCPEpiC	choroid plexus:	n/a
10	chr4:9383942-9383992	U87	brain:	n/a
11	chr4:9355351-9355401	GM06990	blood:	n/a
12	chr4:9479947-9479997	HCM	heart:	n/a
13	chr4:9453010-9453060	GM12878	blood:	n/a
14	chr4:9484735-9484785	HUVEC	blood vessel:	n/a
15	chr4:9482233-9482283	H1-hESC	embryonic stem cell:	embryo
16	chr4:9382961-9383011	SKMC	muscle:	n/a
17	chr4:9382961-9383011	U87	brain:	n/a
18	chr4:9371043-9371093	AG10803	skin:	n/a
19	chr4:9382953-9383003	HEK293	kidney:	embryo
20	chr4:9383942-9383992	AoSMC	blood vessel:	n/a
21	chr4:9476719-9476769	PANC-1	pancreas:	n/a
22	chr4:9382066-9382116	SK-N-SH	brain:	n/a
23	chr4:9453650-9453700	HRCEpiC	kidney:	n/a
24	chr4:9479622-9479672	MCF10A-Er-Src	breast:	n/a
25	chr4:9453010-9453060	Hela-S3	cervix:	n/a
26	chr4:9382961-9383011	HIPEpiC	eye:	n/a
27	chr4:9482074-9482124	GM12878	blood:	n/a
28	chr4:9382953-9383003	GM12891	blood:	n/a
29	chr4:9478126-9478176	SKMC	muscle:	n/a
30	chr4:9371043-9371093	Caco-2	colon:	n/a
31	chr4:9479622-9479672	A549	lung:	n/a
32	chr4:9355372-9355422	ovcar-3	ovarian:	n/a
33	chr4:9482074-9482124	AG09309	skin:	n/a
34	chr4:9355372-9355422	HCPEpiC	choroid plexus:	n/a
35	chr4:9382765-9382815	SK-N-MC	brain:	n/a
36	chr4:9379166-9379216	AG10803	skin:	n/a
37	chr4:9484955-9485005	SK-N-SH_RA	brain:	n/a
38	chr4:9475346-9475396	Hepatocyte	liver:	n/a
39	chr4:9478126-9478176	CMK	blood:	n/a
40	chr4:9478065-9478115	HRPEpiC	eye:	n/a
41	chr4:9371043-9371093	NT2-D1	testis:	n/a
42	chr4:9484955-9485005	GM12878	blood:	n/a
43	chr4:9453084-9453134	ProgFib	skin:	n/a
44	chr4:9445158-9445208	NHBE	bronchial:	n/a
45	chr4:9382765-9382815	Jurkat	blood:	n/a
46	chr4:9485487-9485537	AG09309	skin:	n/a
47	chr4:9385754-9385804	LNCaP	prostate:	n/a
48	chr4:9485487-9485537	HIPEpiC	eye:	n/a
49	chr4:9476719-9476769	NB4	blood:	n/a
50	chr4:9484735-9484785	BJ	skin:	n/a

(count:86 , 50 per page) page: 1 2

No.	Distal block	Cell Line	Cell type
1	chr4:8852857..8854871-chr4:8860134..8862966,2	K562	blood:
2	chr4:9155081..9155863-chr4:79696788..79697581,2	HCT-116	colon:
3	chr4:8816885..8819513-chr4:8838676..8840311,2	K562	blood:
4	chr4:8887296..8888159-chr4:8919813..8920332,3	MCF-7	breast:
5	chr4:8854005..8855600-chr4:8858236..8860977,2	MCF-7	breast:
6	chr4:8875731..8878681-chr4:8880679..8882236,2	K562	blood:
7	chr4:8648999..8649710-chr4:8883912..8884471,2	MCF-7	breast:
8	chr4:8847923..8849486-chr4:8849539..8851969,2	K562	blood:
9	chr4:8689272..8690551-chr4:8887541..8888216,4	MCF-7	breast:
10	chr4:8915119..8916758-chr8:12980450..12982349,2	MCF-7	breast:
11	chr4:8853371..8854874-chr4:8860134..8861698,2	K562	blood:
12	chr4:8917493..8920418-chr4:8922098..8924605,3	K562	blood:
13	chr4:8874973..8877231-chr4:8879936..8882236,2	K562	blood:
14	chr4:8894855..8897793-chr4:8901951..8903870,2	K562	blood:
15	chr4:8987440..8989215-chr4:9123032..9125625,2	MCF-7	breast:
16	chr4:8738768..8740939-chr4:8744102..8745703,2	MCF-7	breast:
17	chr4:8831480..8833563-chr4:8837142..8839666,2	MCF-7	breast:
18	chr4:8728690..8730772-chr4:10106539..10108201,2	K562	blood:
19	chr4:8840585..8842357-chr4:8849488..8852071,2	MCF-7	breast:
20	chr4:8874973..8877231-chr4:8879936..8882236,2	K562	blood:
21	chr4:8778847..8780683-chr4:8898052..8900103,2	MCF-7	breast:
22	chr4:8916094..8919081-chr4:8922098..8925711,3	K562	blood:
23	chr4:8917493..8920418-chr4:8922098..8924605,3	K562	blood:
24	chr4:8743350..8745103-chr4:8747922..8749875,2	MCF-7	breast:
25	chr4:8894855..8897793-chr4:8901951..8903870,2	K562	blood:
26	chr4:8821372..8822221-chr4:8847653..8848611,2	MCF-7	breast:
27	chr4:8827560..8829523-chr4:8830683..8833064,2	K562	blood:
28	chr4:8743350..8745103-chr4:8747922..8749875,2	MCF-7	breast:
29	chr4:8836102..8838665-chr4:8853304..8855667,2	MCF-7	breast:
30	chr4:8776407..8778118-chr4:8779629..8781870,2	MCF-7	breast:
31	chr3:23845597..23847789-chr4:8879627..8881777,2	MCF-7	breast:
32	chr4:8987440..8989215-chr4:9123032..9125625,2	MCF-7	breast:
33	chr4:8617932..8619527-chr4:8918338..8920672,2	MCF-7	breast:
34	chr4:8732091..8733640-chr4:8882099..8884528,2	MCF-7	breast:
35	chr4:8816885..8819513-chr4:8838676..8840311,2	K562	blood:
36	chr4:8840268..8842596-chr4:8847457..8849928,2	MCF-7	breast:
37	chr4:8709792..8713378-chr4:8726638..8730577,3	K562	blood:
38	chr4:8609002..8610016-chr4:8919155..8920078,6	MCF-7	breast:
39	chr4:8827560..8829523-chr4:8830683..8833064,2	K562	blood:
40	chr4:8871272..8873108-chr4:8879640..8882009,2	MCF-7	breast:
41	chr4:8747645..8749434-chr4:8754889..8757407,2	MCF-7	breast:
42	chr4:8690025..8690993-chr4:8919534..8920174,2	MCF-7	breast:
43	chr4:8689949..8690495-chr4:8884145..8884993,2	MCF-7	breast:
44	chr4:8841775..8843355-chr4:8852105..8854658,2	MCF-7	breast:
45	chr4:8483492..8484345-chr4:8919742..8920371,2	MCF-7	breast:
46	chr4:8776407..8778118-chr4:8779629..8781870,2	MCF-7	breast:
47	chr4:8595963..8596810-chr4:8919438..8920172,2	MCF-7	breast:
48	chr4:8887461..8890172-chr4:8891389..8893910,2	MCF-7	breast:
49	chr4:8689647..8690533-chr4:8887295..8888077,4	K562	blood:
50	chr4:8853371..8854874-chr4:8860134..8861698,2	K562	blood:

(count:29 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-HMX1-1	chr4:8749072-8749394	NONHSAT095113
2	lnc-DEFB131-1	chr4:9470746-9471694	NONHSAT095133
3	lnc-RP11-1286E23.8.1-1	chr4:9173538-9173895	XLOC_003448
4	lnc-RP11-1396O13.13.1-2	chr4:9381879-9382091	l_2601_chr4:9381878-9390785_kidney
5	lnc-HMX1-4	chr4:9065968-9066056	NONHSAT095124
6	lnc-HMX1-4	chr4:9074628-9074691	NONHSAT095122
7	lnc-ACOX3-3	chr4:8862375-8862553	ENSG00000258507.1
8	lnc-HMX1-4	chr4:9072963-9073140	NONHSAT095124
9	lnc-RP11-1286E23.8.1-1	chr4:9174843-9174908	XLOC_003448
10	lnc-HMX1-4	chr4:9036310-9037271	NONHSAT095124
11	lnc-HMX1-1	chr4:8749072-8749394	NONHSAT095114
12	lnc-HMX1-2	chr4:9022583-9022887	NONHSAT095120
13	lnc-HMX1-1	chr4:8747123-8747482	ENSG00000250915
14	lnc-HMX1-4	chr4:9036251-9037271	NONHSAT095122
15	lnc-RP11-1396O13.13.1-2	chr4:9390589-9390785	l_2601_chr4:9381878-9390785_kidney
16	lnc-HMX1-3	chr4:9053568-9053777	NONHSAT095125
17	lnc-RP11-1396O13.13.1-1	chr4:9387384-9387466	XLOC_003878
18	lnc-HMX1-1	chr4:8747165-8747482	NONHSAT095114
19	lnc-RP11-1396O13.13.1-1	chr4:9388003-9388085	XLOC_003878
20	lnc-HMX1-1	chr4:8747672-8747863	NONHSAT095113
21	lnc-HMX1-4	chr4:9065968-9066056	NONHSAT095122
22	lnc-HMX1-4	chr4:9036251-9037271	NONHSAT095123
23	lnc-HMX1-1	chr4:8747656-8747863	NONHSAT095114
24	lnc-HMX1-4	chr4:9083355-9083373	NONHSAT095123
25	lnc-RP11-1396O13.13.1-1	chr4:9376809-9376876	XLOC_003878
26	lnc-HMX1-1	chr4:8747165-8747482	NONHSAT095113
27	lnc-ACOX3-3	chr4:8860441-8860823	ENSG00000258507.1
28	lnc-HMX1-4	chr4:9065968-9066056	NONHSAT095123
29	lnc-HMX1-1	chr4:8747656-8747759	ENSG00000250915

No data

Variant related genes	Relation type
FAM86KP	TF binding region
RNA5SP153	TF binding region
OR7E85P	TF binding region
ENSG00000258507	TF binding region
USP17L11	TF binding region
ENSG00000266246	TF binding region
USP17L18	TF binding region
USP17L22	TF binding region
ENSG00000250342	TF binding region
ENSG00000271057	TF binding region
ENSG00000264372	TF binding region
ENSG00000251313	TF binding region
USP17L24	TF binding region
ENSG00000232773	TF binding region
OR7E84P	TF binding region
ENSG00000250804	TF binding region
USP17L29	TF binding region
USP17L13	TF binding region
OR7E86P	TF binding region
HMX1	TF binding region
USP17L14P	TF binding region
ENSG00000197468	TF binding region
ENSG00000219492	TF binding region
USP17L12	TF binding region
ENSG00000238726	TF binding region
DEFB131	TF binding region
USP17L19	TF binding region
USP17L9P	TF binding region
USP17L5	TF binding region
ALG1L14P	TF binding region
USP17L10	TF binding region
UNC93B8	TF binding region
USP17L30	TF binding region
ENSG00000250915	TF binding region
FAM90A26	TF binding region
ENSG00000188438	TF binding region
USP17L16P	TF binding region
USP17L17	TF binding region
ENPP7P10	TF binding region
USP17L21	TF binding region
USP17L15	TF binding region
USP17L26	TF binding region
USP17L23	TF binding region
ENSG00000249347	TF binding region
USP17L25	TF binding region
USP17L6P	TF binding region
USP17L27	TF binding region
USP17L20	TF binding region
USP17L28	TF binding region
FAM86KP	CpG island
RNA5SP153	CpG island
OR7E85P	CpG island
ENSG00000258507	CpG island
USP17L11	CpG island
ENSG00000266246	CpG island
USP17L18	CpG island
USP17L22	CpG island
ENSG00000250342	CpG island
ENSG00000271057	CpG island
ENSG00000264372	CpG island
ENSG00000251313	CpG island
USP17L24	CpG island
ENSG00000232773	CpG island
OR7E84P	CpG island
ENSG00000250804	CpG island
USP17L29	CpG island
USP17L13	CpG island
OR7E86P	CpG island
HMX1	CpG island
USP17L14P	CpG island
ENSG00000197468	CpG island
ENSG00000219492	CpG island
USP17L12	CpG island
ENSG00000238726	CpG island
DEFB131	CpG island
USP17L19	CpG island
USP17L9P	CpG island
USP17L5	CpG island
ALG1L14P	CpG island
USP17L10	CpG island
UNC93B8	CpG island
USP17L30	CpG island
ENSG00000250915	CpG island
FAM90A26	CpG island
ENSG00000188438	CpG island
USP17L16P	CpG island
USP17L17	CpG island
ENPP7P10	CpG island
USP17L21	CpG island
USP17L15	CpG island
USP17L26	CpG island
USP17L23	CpG island
ENSG00000249347	CpG island
USP17L25	CpG island
USP17L6P	CpG island
USP17L27	CpG island
USP17L20	CpG island
USP17L28	CpG island
ENSG00000087008	chromatin interactions
ENSG00000260278	chromatin interactions
ENSG00000155275	chromatin interactions
ENSG00000138756	chromatin interactions
ENSG00000205959	chromatin interactions
ENSG00000258507	chromatin interactions
ENSG00000071127	chromatin interactions
ENSG00000170142	chromatin interactions
ENSG00000250915	chromatin interactions

Extended variants
information (count: 18143 )
Associated
traits (count: 70 )

Variant overlapped rSNPs/rCNVs (count:18143 , 50 per page) page: 1 2 3 4 5 6 7 ... 363

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs13135404	chr4:8729638-8729639	Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
2	rs552375371	chr4:8729641-8729642	Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
3	rs564899796	chr4:8729650-8729651	Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
4	rs189771661	chr4:8729680-8729681	Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
5	rs571334653	chr4:8729682-8729683	Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
6	rs182307811	chr4:8729696-8729697	Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
7	rs114801846	chr4:8729792-8729793	Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
8	rs565941687	chr4:8729793-8729794	Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
9	rs536149247	chr4:8729796-8729797	Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
10	rs149111406	chr4:8729798-8729799	Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
11	rs576140492	chr4:8729840-8729841	Enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
12	rs75571493	chr4:8729849-8729850	Enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
13	rs558199565	chr4:8729889-8729890	Enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
14	rs576532618	chr4:8729906-8729907	Enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
15	rs540583415	chr4:8729944-8729945	Enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
16	rs558913662	chr4:8729959-8729960	Enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
17	rs574419776	chr4:8730004-8730005	Enhancers ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
18	rs565863628	chr4:8730049-8730050	Enhancers ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
19	rs373267958	chr4:8730067-8730068	Enhancers ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
20	rs77415256	chr4:8730070-8730071	Enhancers ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
21	rs530978122	chr4:8730072-8730073	Enhancers ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
22	rs552759627	chr4:8730074-8730075	Enhancers ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
23	rs564527414	chr4:8730081-8730082	Enhancers ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
24	rs75180907	chr4:8730092-8730093	Enhancers ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
25	rs547158741	chr4:8730100-8730101	Enhancers ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
26	rs568440045	chr4:8730101-8730102	Enhancers ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
27	rs186164986	chr4:8730111-8730112	Enhancers ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
28	rs548147721	chr4:8730117-8730118	Enhancers ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
29	rs569952996	chr4:8730132-8730133	Enhancers ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
30	rs143152944	chr4:8730237-8730238	ZNF genes & repeats Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
31	rs372953260	chr4:8730238-8730239	ZNF genes & repeats Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
32	rs536013211	chr4:8730267-8730268	ZNF genes & repeats Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
33	rs77340259	chr4:8730277-8730278	ZNF genes & repeats Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
34	rs78583702	chr4:8730278-8730279	ZNF genes & repeats Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
35	rs138658279	chr4:8730294-8730295	ZNF genes & repeats Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
36	rs142885034	chr4:8730313-8730314	ZNF genes & repeats Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
37	rs191053010	chr4:8730315-8730316	ZNF genes & repeats Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
38	rs574336763	chr4:8730389-8730390	ZNF genes & repeats Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
39	rs541826954	chr4:8730411-8730412	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
40	rs563802452	chr4:8730426-8730427	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
41	rs76425744	chr4:8730480-8730481	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
42	rs546380556	chr4:8730557-8730558	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
43	rs145041344	chr4:8730568-8730569	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
44	rs567394379	chr4:8730578-8730579	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
45	rs141364046	chr4:8730586-8730587	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
46	rs374913104	chr4:8730587-8730588	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
47	rs60182776	chr4:8730604-8730605	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
48	rs183260196	chr4:8730608-8730609	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
49	rs547097543	chr4:8730638-8730639	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
50	rs562223341	chr4:8730658-8730659	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:70)

Disease	PMID	Source
Melanoma	20688739	CNVD
Wilms tumour	21544195	CNVD
Colorectal cancer	16272173	CNVD
Non-syndromic sensorineural hearing loss	20606397	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Breast cancer	17603634	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Medulloblastoma	21979893	CNVD
Basal cell lymphoma	17053054	CNVD
Colorectal cancer	19359472	CNVD
Neuroblastoma	17533364	CNVD
head and neck squamous cell carcinoma	17671120	CNVD
Cancer	21637783	CNVD
Melanoma	21693616	CNVD
Squamous cell cancer	21044232	CNVD
Colorectal cancer	20709793	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Non-small cell lung cancer	21044232	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	17387387	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	19960244	CNVD
Cervical cancer	21062161	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Glioblastoma multiforme	21080181	CNVD
Chordoma	21602918	CNVD
HIV/AIDS	22032296	CNVD
Neuroblastoma	18923191	CNVD
small cell lung cancer	20016488	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Prostate cancer	18632612	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Intellectual disability	22102821	CNVD
Autism	22495311	CNVD
Breast cancer	21785460	CNVD
Chronic lymphocytic leukemia	20421269	CNVD
Breast cancer	21509527	CNVD
Lung cancer	18438408	CNVD
Urothelial carcinoma	21177765	CNVD
Myelofibrosis	22110671	CNVD
Hirschsprung''s Disease	21712996	CNVD
Schizophrenia	22241247	CNVD
Autosomal-dominant microtia	18179897	CNVD
Glioma	17123091	CNVD
Colorectal cancer	20459617	CNVD
Breast cancer	17133270	CNVD
Sezary syndrome	18413736	CNVD
Pancreatic ductal adenocarcinoma	19077451	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
Ependymoma	20639864	CNVD
Non-syndromic sensorineural hearing loss	18451855	CNVD
Pancreatic cancer	17952125	CNVD
Schizophrenia	23813976	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD
Non-syndromic sensorineural hearing loss	21030649	CNVD
Autism	21865298	CNVD
Breast cancer	22522925	CNVD
early-passage human iPS cells	21368824	CNVD
Schizophrenia	20967226	CNVD
Non-syndromic sensorineural hearing loss	19587683	CNVD
Ovarian clear cell carcinoma	21343371	CNVD
Non-syndromic sensorineural hearing loss	21293372	CNVD
Bipolar disorder	19114987	CNVD
Breast cancer	21858162	CNVD
Neuroblastoma	20406844	CNVD

Chromatin state (count:2149 , 50 per page) page: 1 2 3 4 5 6 7 ... 43

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:8728200-8732400	Enhancers	Primary neutrophils fromperipheralblood	blood
2	chr4:8728400-8730000	Enhancers	Primary hematopoietic stem cells short term culture	blood
3	chr4:8729000-8730200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr4:8729200-8729800	Enhancers	Primary hematopoietic stem cells	blood
5	chr4:8729200-8729800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr4:8729400-8729800	Enhancers	Gastric	stomach
7	chr4:8729800-8731400	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr4:8730000-8730200	Bivalent Enhancer	Fetal Muscle Trunk	muscle
9	chr4:8730200-8730400	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr4:8730400-8734000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr4:8734400-8734800	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr4:8736800-8744800	Weak transcription	Right Atrium	heart
13	chr4:8737400-8737600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr4:8737600-8741800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr4:8739200-8743000	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr4:8740600-8740800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr4:8740600-8743200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr4:8740800-8741800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr4:8741000-8741400	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
20	chr4:8741200-8741400	Bivalent Enhancer	Fetal Muscle Trunk	muscle
21	chr4:8741600-8742600	Enhancers	Fetal Brain Male	brain
22	chr4:8741600-8742800	Enhancers	Brain Germinal Matrix	brain
23	chr4:8741800-8742200	Enhancers	HUES64 Cell Line	embryonic stem cell
24	chr4:8741800-8743000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr4:8741800-8743000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
26	chr4:8741800-8743600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
27	chr4:8742000-8742200	Bivalent Enhancer	Brain Hippocampus Middle	brain
28	chr4:8742000-8742200	Enhancers	Esophagus	oesophagus
29	chr4:8742000-8742200	Bivalent Enhancer	Fetal Stomach	stomach
30	chr4:8742000-8742400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr4:8742000-8742600	Bivalent Enhancer	Fetal Brain Female	brain
32	chr4:8742000-8742800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
33	chr4:8742600-8742800	Bivalent Enhancer	Fetal Brain Male	brain
34	chr4:8742600-8743000	Bivalent Enhancer	Fetal Muscle Trunk	muscle
35	chr4:8742800-8743200	Enhancers	H1 Cell Line	embryonic stem cell
36	chr4:8743000-8743400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
37	chr4:8743000-8746000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
38	chr4:8743000-8748200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr4:8743200-8746400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
40	chr4:8743600-8743800	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
41	chr4:8746000-8746400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
42	chr4:8746400-8747200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
43	chr4:8746400-8748200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
44	chr4:8747800-8748200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
45	chr4:8748200-8748400	Enhancers	Esophagus	oesophagus
46	chr4:8748200-8748400	Flanking Bivalent TSS/Enh	Fetal Brain Male	brain
47	chr4:8748200-8748400	ZNF genes & repeats	Gastric	stomach
48	chr4:8748200-8748600	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
49	chr4:8748200-8748600	ZNF genes & repeats	H9 Cell Line	embryonic stem cell
50	chr4:8748200-8748600	Bivalent/Poised TSS	Fetal Kidney	kidney

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links