Variant report

Variant	nsv879041
Chromosome Location	chr4:59621853-59799872
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:2)
LncRNA
region (count:16)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:2 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:59709166..59709865-chr8:124956173..124956896,2	MCF-7	breast:
2	chr4:59728253..59729166-chr6:123431104..123432018,2	MCF-7	breast:

(count:16 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-IGFBP7-5	chr4:59726676-59726773	XLOC_003962
2	lnc-IGFBP7-5	chr4:59727050-59727134	XLOC_003962
3	lnc-IGFBP7-5	chr4:59727050-59727134	ENSG00000251339
4	lnc-IGFBP7-5	chr4:59727050-59727134	XLOC_003962
5	lnc-IGFBP7-5	chr4:59727050-59727134	XLOC_003962
6	lnc-IGFBP7-5	chr4:59727050-59727134	XLOC_003962
7	lnc-IGFBP7-5	chr4:59727050-59727134	XLOC_003962
8	lnc-IGFBP7-5	chr4:59648710-59648807	XLOC_003962
9	lnc-IGFBP7-5	chr4:59650201-59650426	XLOC_003962
10	lnc-IGFBP7-5	chr4:59713333-59713530	XLOC_003962
11	lnc-IGFBP7-5	chr4:59717135-59717370	ENSG00000251339
12	lnc-IGFBP7-5	chr4:59646791-59647291	XLOC_003962
13	lnc-IGFBP7-5	chr4:59723790-59723913	XLOC_003962
14	lnc-IGFBP7-5	chr4:59717359-59717370	XLOC_003962
15	lnc-IGFBP7-5	chr4:59727050-59727134	NONHSAT096581
16	lnc-IGFBP7-5	chr4:59727050-59727134	XLOC_003962

No data

Variant related genes	Relation type
PDCD6IP	miRNA target sites
FLI1	miRNA target sites
KLF4	miRNA target sites
PDCD6	miRNA target sites

Extended variants
information (count: 848 )
Associated
traits (count: 82 )

Variant overlapped rSNPs/rCNVs (count:848 , 50 per page) page: 1 2 3 4 5 6 7 ... 17

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs188840299	chr4:59623202-59623203	Active TSS	n/a	n/a	Overlapped CNVs	n/a
2	rs554036397	chr4:59623212-59623213	Active TSS	n/a	n/a	Overlapped CNVs	n/a
3	rs568414337	chr4:59623255-59623256	Active TSS	n/a	n/a	Overlapped CNVs	n/a
4	rs572567766	chr4:59623259-59623260	Active TSS	n/a	n/a	Overlapped CNVs	n/a
5	rs192394823	chr4:59623274-59623275	Active TSS	n/a	n/a	Overlapped CNVs	n/a
6	rs115532168	chr4:59623282-59623283	Active TSS	n/a	n/a	Overlapped CNVs	n/a
7	rs145599086	chr4:59623292-59623293	Active TSS	n/a	n/a	Overlapped CNVs	n/a
8	rs148882300	chr4:59623293-59623294	Active TSS	n/a	n/a	Overlapped CNVs	n/a
9	rs558971838	chr4:59623299-59623300	Active TSS	n/a	n/a	Overlapped CNVs	n/a
10	rs577495030	chr4:59623305-59623306	Active TSS	n/a	n/a	Overlapped CNVs	n/a
11	rs541264442	chr4:59623306-59623307	Active TSS	n/a	n/a	Overlapped CNVs	n/a
12	rs73196591	chr4:59623332-59623333	Active TSS	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
13	rs371703457	chr4:59623349-59623350	Active TSS	n/a	n/a	Overlapped CNVs	n/a
14	rs527347607	chr4:59623395-59623396	Active TSS	n/a	n/a	Overlapped CNVs	n/a
15	rs13143725	chr4:59623396-59623397	Active TSS	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
16	rs560517429	chr4:59623406-59623407	Active TSS	n/a	n/a	Overlapped CNVs	n/a
17	rs34494530	chr4:59623436-59623437	Active TSS	n/a	n/a	Overlapped CNVs	n/a
18	rs142590441	chr4:59623480-59623481	Active TSS	n/a	n/a	Overlapped CNVs	n/a
19	rs549781025	chr4:59623499-59623500	Active TSS	n/a	n/a	Overlapped CNVs	n/a
20	rs184357140	chr4:59623511-59623512	Active TSS	n/a	n/a	Overlapped CNVs	n/a
21	rs150959176	chr4:59623515-59623516	Active TSS	n/a	n/a	Overlapped CNVs	n/a
22	rs537465482	chr4:59623544-59623545	Active TSS	n/a	n/a	Overlapped CNVs	n/a
23	rs547603003	chr4:59623569-59623570	Active TSS	n/a	n/a	Overlapped CNVs	n/a
24	rs565889779	chr4:59623576-59623577	Active TSS	n/a	n/a	Overlapped CNVs	n/a
25	rs536716527	chr4:59623590-59623591	Active TSS	n/a	n/a	Overlapped CNVs	n/a
26	rs4865369	chr4:59623613-59623614	Active TSS	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
27	rs140945554	chr4:59623616-59623617	Active TSS	n/a	n/a	Overlapped CNVs	n/a
28	rs537029974	chr4:59623650-59623651	Active TSS	n/a	n/a	Overlapped CNVs	n/a
29	rs558959611	chr4:59623682-59623683	Active TSS	n/a	n/a	Overlapped CNVs	n/a
30	rs577461062	chr4:59623740-59623741	Active TSS	n/a	n/a	Overlapped CNVs	n/a
31	rs76412948	chr4:59623752-59623753	Active TSS	n/a	n/a	Overlapped CNVs	n/a
32	rs553106927	chr4:59623755-59623756	Active TSS	n/a	n/a	Overlapped CNVs	n/a
33	rs574711422	chr4:59623797-59623798	Active TSS	n/a	n/a	Overlapped CNVs	n/a
34	rs527869584	chr4:59626612-59626613	Enhancers	n/a	n/a	Overlapped CNVs	n/a
35	rs558242401	chr4:59626622-59626623	Enhancers	n/a	n/a	Overlapped CNVs	n/a
36	rs34685228	chr4:59626660-59626661	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
37	rs183211456	chr4:59626695-59626696	Enhancers	n/a	n/a	Overlapped CNVs	n/a
38	rs376827898	chr4:59626733-59626734	Enhancers	n/a	n/a	Overlapped CNVs	n/a
39	rs535240128	chr4:59626742-59626743	Enhancers	n/a	n/a	Overlapped CNVs	n/a
40	rs550511568	chr4:59626772-59626773	Enhancers	n/a	n/a	Overlapped CNVs	n/a
41	rs28626325	chr4:59626862-59626863	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
42	rs545581605	chr4:59626870-59626871	Enhancers	n/a	n/a	Overlapped CNVs	n/a
43	rs539692158	chr4:59626919-59626920	Enhancers	n/a	n/a	Overlapped CNVs	n/a
44	rs140993838	chr4:59626939-59626940	Enhancers	n/a	n/a	Overlapped CNVs	n/a
45	rs187536389	chr4:59626958-59626959	Enhancers	n/a	n/a	Overlapped CNVs	n/a
46	rs533735259	chr4:59626983-59626984	Enhancers	n/a	n/a	Overlapped CNVs	n/a
47	rs531198488	chr4:59627079-59627080	Enhancers	n/a	n/a	Overlapped CNVs	n/a
48	rs11133584	chr4:59627102-59627103	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
49	rs544382016	chr4:59627133-59627134	Enhancers	n/a	n/a	Overlapped CNVs	n/a
50	rs11133585	chr4:59627145-59627146	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a

Variant related diseases (count:82)

Disease	PMID	Source
Gastrointestinal stromal cancer	16982739	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Glioblastoma multiforme	21080181	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Chordoma	21602918	CNVD
HIV/AIDS	22032296	CNVD
Medulloblastoma	21979893	CNVD
Neuroblastoma	18923191	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Intellectual disability	22102821	CNVD
Autism	22495311	CNVD
Breast cancer	21858162	CNVD
Small bowel adenocarcinoma	21586687	CNVD
Gastric cancer	21586687	CNVD
lymphocytic leukemia	21291569	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Non-small cell lung cancer	21829676	CNVD
Melanoma	18172304	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Lung cancer	18438408	CNVD
Renal cell carcinoma	18194544	CNVD
Breast cancer	17603634	CNVD
Glioblastoma multiforme	21922591	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Parkinson disease	21956041	CNVD
Mental retardation	20522426	CNVD
delayed speech	20522426	CNVD
growth disorder	20522426	CNVD
Hepatocellular carcinoma	16750200	CNVD
Myxofibrosarcoma	16751306	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Parkinson disease	18923514	CNVD
Non-syndromic sensorineural hearing loss	15273396	CNVD
Cancer	21183584	CNVD
Breast cancer	16272173	CNVD
Multiple myeloma	16616336	CNVD
Colorectal cancer	19359472	CNVD
Malignant mesothelioma	18160781	CNVD
Medulloblastoma	18056178	CNVD
Multiple myeloma	17077331	CNVD
Pleural malignant mesothelioma	18160781	CNVD
Primary mediastinal b-cell lymphoma	17728785	CNVD
Oral squamous cell carcinoma	17134496	CNVD
4q-syndrome	17576883	CNVD
Cancer	21637783	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Colorectal cancer	20709793	CNVD
Muscular dystrophy	21149563	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	17387387	CNVD
Hepatocellular carcinoma	22174799	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Cervical cancer	21062161	CNVD
Metanephric adenoma	20802469	CNVD
Breast cancer	16608533	CNVD
Colorectal cancer	16272173	CNVD
Adenoid cystic carcinoma	18698036	CNVD
Lung cancer	19208797	CNVD
small cell lung cancer	20016488	CNVD
Wilms tumour	21544195	CNVD
Breast cancer	21785460	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Acute myeloid leukemia	21251322	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Acute myeloid leukemia	20729466	CNVD
Myelofibrosis	22110671	CNVD
Intellectual disability	22045946	CNVD
Ewing''s sarcoma	17952124	CNVD
Acute monocytic leukemia	16498392	CNVD
Prostate cancer	16573809	CNVD
Osteoporosis	18992858	CNVD
Basal cell lymphoma	17170743	CNVD
Follicular lymphoma	17170743	CNVD
Glioma	20126413	CNVD
Non-syndromic sensorineural hearing loss	21293372	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD
Non-syndromic sensorineural hearing loss	18451855	CNVD
early-passage human iPS cells	21368824	CNVD

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:59623200-59623800	Active TSS	A549	lung
2	chr4:59626600-59627000	Enhancers	A549	lung
3	chr4:59626600-59627800	Enhancers	Pancreatic Islets	Pancreatic Islet
4	chr4:59632800-59633200	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr4:59633000-59633800	Enhancers	A549	lung
6	chr4:59639400-59640000	Active TSS	Pancreatic Islets	Pancreatic Islet
7	chr4:59640800-59641000	Enhancers	Pancreatic Islets	Pancreatic Islet
8	chr4:59642400-59642800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr4:59642400-59642800	Enhancers	NH-A	brain
10	chr4:59673400-59675400	Enhancers	A549	lung
11	chr4:59673600-59673800	Enhancers	Placenta	Placenta
12	chr4:59673800-59674600	Weak transcription	Placenta	Placenta
13	chr4:59674600-59676000	Enhancers	Placenta	Placenta
14	chr4:59674600-59676200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr4:59674600-59676200	Enhancers	Placenta Amnion	Placenta Amnion
16	chr4:59675200-59676200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr4:59675400-59676200	Flanking Active TSS	A549	lung
18	chr4:59675600-59676000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr4:59675600-59676200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
20	chr4:59675600-59676200	Enhancers	iPS-20b Cell Line	embryonic stem cell
21	chr4:59675600-59676200	Enhancers	Fetal Intestine Small	intestine
22	chr4:59676000-59676800	Weak transcription	Placenta	Placenta
23	chr4:59676200-59677600	Enhancers	A549	lung
24	chr4:59676200-59677800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr4:59676800-59677400	Enhancers	Placenta	Placenta
26	chr4:59677400-59682800	Weak transcription	Placenta	Placenta
27	chr4:59678000-59678200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr4:59682800-59683200	Enhancers	Placenta	Placenta
29	chr4:59683200-59684600	Weak transcription	Placenta	Placenta
30	chr4:59684600-59685200	Enhancers	Placenta	Placenta
31	chr4:59700600-59701000	Enhancers	iPS-15b Cell Line	embryonic stem cell
32	chr4:59707600-59708200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
33	chr4:59723000-59723200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
34	chr4:59737800-59738400	Enhancers	A549	lung

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