Variant report

Variant	nsv879521
Chromosome Location	chr4:86979927-87165758
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:828)
CpG islands
(count:366)
Chromatin interactive
region (count:30)
LncRNA
region (count:13)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:828 , 50 per page) page: 1 2 3 4 5 6 7 ... 17

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr4:87144744-87144944	HepG2	liver:	n/a	n/a
2	ARID3A	chr4:87029865-87030369	HepG2	liver:	n/a	n/a
3	ATF3	chr4:87144617-87145050	H1-hESC	embryonic stem cell:	n/a	n/a
4	BACH1	chr4:86997741-86997912	K562	blood:	n/a	n/a
5	BATF	chr4:87164474-87164694	GM12878	blood:	n/a	n/a
6	BATF	chr4:87164975-87165324	GM12878	blood:	n/a	n/a
7	BATF	chr4:87164990-87165297	GM12878	blood:	n/a	n/a
8	BCL3	chr4:87139848-87140698	A549	lung:	n/a	n/a
9	BCL3	chr4:87141044-87141632	A549	lung:	n/a	n/a
10	BHLHE40	chr4:87148090-87148128	GM12878	blood:	n/a	n/a
11	BHLHE40	chr4:87165152-87165200	GM12878	blood:	n/a	n/a
12	BHLHE40	chr4:87020633-87020671	K562	blood:	n/a	n/a
13	BHLHE40	chr4:87030030-87030251	HepG2	liver:	n/a	n/a
14	BRCA1	chr4:87141061-87141619	Hela-S3	cervix:	n/a	n/a
15	CBX3	chr4:87003832-87004143	K562	blood:	n/a	n/a
16	CEBPB	chr4:87011178-87011337	Hela-S3	cervix:	n/a	n/a
17	CEBPB	chr4:87140149-87140547	MCF-7	breast:	n/a	chr4:87140416-87140427 chr4:87140418-87140429
18	CEBPB	chr4:87139832-87140652	Hela-S3	cervix:	n/a	chr4:87140416-87140427 chr4:87140418-87140429
19	CEBPB	chr4:87063561-87063863	K562	blood:	n/a	chr4:87063684-87063695
20	CEBPB	chr4:87140365-87140544	HepG2	liver:	n/a	chr4:87140416-87140427 chr4:87140418-87140429
21	CEBPB	chr4:87055574-87055650	K562	blood:	n/a	chr4:87055591-87055602 chr4:87055593-87055606 chr4:87055591-87055602 chr4:87055595-87055606
22	CEBPB	chr4:87013868-87014577	IMR90	lung:	n/a	n/a
23	CEBPB	chr4:87063544-87063833	A549	lung:	n/a	chr4:87063684-87063695
24	CEBPB	chr4:87014294-87014539	H1-hESC	embryonic stem cell:	n/a	n/a
25	CEBPB	chr4:87119404-87119564	Hela-S3	cervix:	n/a	n/a
26	CEBPB	chr4:87011200-87011377	K562	blood:	n/a	n/a
27	CEBPB	chr4:87119485-87119620	H1-hESC	embryonic stem cell:	n/a	n/a
28	CEBPB	chr4:87014247-87014568	HepG2	liver:	n/a	n/a
29	CEBPB	chr4:87013911-87014575	K562	blood:	n/a	n/a
30	CEBPB	chr4:87013806-87014579	A549	lung:	n/a	n/a
31	CEBPB	chr4:87039260-87039438	IMR90	lung:	n/a	n/a
32	CEBPB	chr4:87080544-87080605	IMR90	lung:	n/a	n/a
33	CEBPB	chr4:87063552-87063827	HepG2	liver:	n/a	chr4:87063684-87063695
34	CEBPB	chr4:87141244-87141788	A549	lung:	n/a	n/a
35	CEBPB	chr4:87063517-87063828	IMR90	lung:	n/a	chr4:87063684-87063695
36	CEBPB	chr4:87105460-87105731	Hela-S3	cervix:	n/a	n/a
37	CEBPB	chr4:87140239-87140583	IMR90	lung:	n/a	chr4:87140416-87140427 chr4:87140418-87140429
38	CEBPB	chr4:87140179-87140660	A549	lung:	n/a	chr4:87140416-87140427 chr4:87140418-87140429
39	CEBPB	chr4:87022205-87022405	A549	lung:	n/a	n/a
40	CEBPB	chr4:87080285-87080666	HepG2	liver:	n/a	n/a
41	CEBPB	chr4:87108365-87108678	HepG2	liver:	n/a	n/a
42	CEBPB	chr4:87141356-87141683	A549	lung:	n/a	n/a
43	CEBPB	chr4:87143888-87144168	Hela-S3	cervix:	n/a	n/a
44	CEBPB	chr4:87139991-87140700	MCF-7	breast:	n/a	chr4:87140416-87140427 chr4:87140418-87140429
45	CEBPB	chr4:87108462-87108618	A549	lung:	n/a	n/a
46	CEBPB	chr4:87139963-87140720	A549	lung:	n/a	chr4:87140416-87140427 chr4:87140418-87140429
47	CEBPB	chr4:87108494-87108549	K562	blood:	n/a	n/a
48	CEBPB	chr4:87013848-87014567	Hela-S3	cervix:	n/a	n/a
49	CEBPB	chr4:87011160-87011360	H1-hESC	embryonic stem cell:	n/a	n/a
50	CEBPB	chr4:87011114-87011427	IMR90	lung:	n/a	n/a

(count:366 , 50 per page) page: 1 2 3 4 5 6 7 8

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr4:87056153-87056203	HCT-116	colon:	n/a
2	chr4:87028501-87028551	SK-N-SH	brain:	n/a
3	chr4:87028602-87028652	BJ	skin:	n/a
4	chr4:86997288-86997338	HNPCEpiC	eye:	n/a
5	chr4:87028602-87028652	PFSK-1	brain:	n/a
6	chr4:87028501-87028551	IMR90	lung:	fetal
7	chr4:87030123-87030173	HCPEpiC	choroid plexus:	n/a
8	chr4:87028501-87028551	HEK293	kidney:	embryo
9	chr4:87040423-87040473	HCT-116	colon:	n/a
10	chr4:87056153-87056203	HRE	kidney:	n/a
11	chr4:87028501-87028551	MCF-7	breast:	n/a
12	chr4:87056153-87056203	H1-hESC	embryonic stem cell:	embryo
13	chr4:86997288-86997338	MCF-7	breast:	n/a
14	chr4:87030123-87030173	HNPCEpiC	eye:	n/a
15	chr4:87028501-87028551	HAEpiC	amniotic membrane:	n/a
16	chr4:87030123-87030173	IMR90	lung:	fetal
17	chr4:87030123-87030173	Hepatocyte	liver:	n/a
18	chr4:87040423-87040473	NH-A	brain:	n/a
19	chr4:87030123-87030173	HPAEpiC	pulmonary alveolar:	n/a
20	chr4:86997288-86997338	ovcar-3	ovarian:	n/a
21	chr4:87028602-87028652	HEK293	kidney:	embryo
22	chr4:87056153-87056203	HIPEpiC	eye:	n/a
23	chr4:87030123-87030173	AG09309	skin:	n/a
24	chr4:86997288-86997338	NHDF-neo	bronchial:	n/a
25	chr4:87040423-87040473	BE2_C	brain:	n/a
26	chr4:86997288-86997338	H1-hESC	embryonic stem cell:	embryo
27	chr4:87056153-87056203	Jurkat	blood:	n/a
28	chr4:87056153-87056203	AG04449	skin:	fetal
29	chr4:87028602-87028652	GM06990	blood:	n/a
30	chr4:86997288-86997338	NT2-D1	testis:	n/a
31	chr4:87040423-87040473	AG09319	gingival:	n/a
32	chr4:87030123-87030173	HCT-116	colon:	n/a
33	chr4:87030123-87030173	PANC-1	pancreas:	n/a
34	chr4:87028501-87028551	Jurkat	blood:	n/a
35	chr4:87040423-87040473	Hela-S3	cervix:	n/a
36	chr4:87030123-87030173	SAEC	small airway:	n/a
37	chr4:87040423-87040473	SK-N-SH	brain:	n/a
38	chr4:87028602-87028652	GM12892	blood:	n/a
39	chr4:87028602-87028652	SK-N-MC	brain:	n/a
40	chr4:87028501-87028551	NHBE	bronchial:	n/a
41	chr4:87040423-87040473	MCF-7	breast:	n/a
42	chr4:87028602-87028652	HIPEpiC	eye:	n/a
43	chr4:87028501-87028551	AG04450	lung:	fetal
44	chr4:86997288-86997338	Hepatocyte	liver:	n/a
45	chr4:87028602-87028652	AG10803	skin:	n/a
46	chr4:87028501-87028551	HCM	heart:	n/a
47	chr4:87030123-87030173	NT2-D1	testis:	n/a
48	chr4:87028501-87028551	HPAEpiC	pulmonary alveolar:	n/a
49	chr4:87028501-87028551	U87	brain:	n/a
50	chr4:87028501-87028551	HIPEpiC	eye:	n/a

(count:30 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr4:87024355..87027343-chr4:87027765..87029282,2	MCF-7	breast:
2	chr4:87018345..87020243-chr4:87021552..87023121,2	MCF-7	breast:
3	chr4:87140077..87142353-chr4:87143339..87145832,2	MCF-7	breast:
4	chr4:87134159..87136485-chr4:87181961..87184950,2	MCF-7	breast:
5	chr4:86964897..86966021-chr4:87144762..87145373,4	MCF-7	breast:
6	chr4:86974348..86976679-chr4:86978244..86980026,2	MCF-7	breast:
7	chr4:86996065..86997848-chr4:87003738..87005825,2	K562	blood:
8	chr4:87132187..87133769-chr4:87135857..87137593,2	MCF-7	breast:
9	chr4:87079015..87081853-chr4:87083542..87085468,2	K562	blood:
10	chr4:87140077..87142353-chr4:87143339..87145832,2	MCF-7	breast:
11	chr17:67196658..67197255-chr4:86998915..86999454,2	HCT-116	colon:
12	chr4:87070864..87073086-chr4:87075454..87077437,2	K562	blood:
13	chr4:87068101..87070840-chr4:87077987..87079819,2	MCF-7	breast:
14	chr4:87074554..87076995-chr4:87081060..87082909,2	MCF-7	breast:
15	chr4:87132187..87133769-chr4:87135857..87137593,2	MCF-7	breast:
16	chr4:87155810..87157593-chr4:87170077..87172350,2	K562	blood:
17	chr4:87074554..87076995-chr4:87081060..87082909,2	MCF-7	breast:
18	chr4:86996153..86999257-chr4:86999314..87002749,3	K562	blood:
19	chr4:87048655..87051037-chr4:87083679..87085994,2	MCF-7	breast:
20	chr4:87070864..87072590-chr4:87074186..87076954,2	K562	blood:
21	chr4:87070864..87073086-chr4:87075454..87077437,2	K562	blood:
22	chr4:86996065..86997848-chr4:87003738..87005825,2	K562	blood:
23	chr4:87118979..87120763-chr4:87124229..87126055,2	K562	blood:
24	chr4:87068101..87070840-chr4:87077987..87079819,2	MCF-7	breast:
25	chr4:87118979..87120763-chr4:87124229..87126055,2	K562	blood:
26	chr4:87024355..87027343-chr4:87027765..87029282,2	MCF-7	breast:
27	chr4:87048655..87051037-chr4:87083679..87085994,2	MCF-7	breast:
28	chr4:86996153..86999257-chr4:86999314..87002749,3	K562	blood:
29	chr4:87070864..87072590-chr4:87074186..87076954,2	K562	blood:
30	chr4:87079015..87081853-chr4:87083542..87085468,2	K562	blood:

(count:13 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ARHGAP24-1	chr4:87041137-87041754	ENSG00000250062.1
2	lnc-ARHGAP24-1	chr4:87041137-87041754	ENSG00000250062.1
3	lnc-SLC10A6-4	chr4:87097140-87097232	NONHSAT097276
4	lnc-ARHGAP24-1	chr4:87048745-87048853	ENSG00000250062.1
5	lnc-ARHGAP24-1	chr4:87048745-87048841	ENSG00000250062.1
6	lnc-ARHGAP24-1	chr4:87039065-87039115	ENSG00000250062.1
7	lnc-ARHGAP24-1	chr4:87040879-87041036	NONHSAT097275
8	lnc-ARHGAP24-1	chr4:87140928-87141079	ENSG00000250062.1
9	lnc-ARHGAP24-1	chr4:87041137-87041754	NONHSAT097275
10	lnc-ARHGAP24-1	chr4:87048745-87048940	NONHSAT097275
11	lnc-SLC10A6-4	chr4:87085599-87085718	NONHSAT097276
12	lnc-SLC10A6-4	chr4:87115489-87115560	NONHSAT097276
13	lnc-ARHGAP24-1	chr4:87040867-87041036	ENSG00000250062.1

No data

Variant related genes	Relation type
MAPK10	TF binding region
ENSG00000250062	TF binding region
MAPK10	CpG island
ENSG00000250062	CpG island
ENSG00000109339	chromatin interactions

Extended variants
information (count: 6216 )
Associated
traits (count: 85 )

Variant overlapped rSNPs/rCNVs (count:6216 , 50 per page) page: 1 2 3 4 5 6 7 ... 125

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs3775183	chr4:86979927-86979928	Weak transcription Strong transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
2	rs565632852	chr4:86979936-86979937	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs536085495	chr4:86979959-86979960	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs115732700	chr4:86979997-86979998	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs569442484	chr4:86980030-86980031	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs188781695	chr4:86980056-86980057	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs3775184	chr4:86980059-86980060	Weak transcription Strong transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
8	rs191508340	chr4:86980087-86980088	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs535011158	chr4:86980100-86980101	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs148123458	chr4:86980143-86980144	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs746438	chr4:86980256-86980257	Weak transcription Strong transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
12	rs542470747	chr4:86980422-86980423	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs556032688	chr4:86980424-86980425	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs183508300	chr4:86980458-86980459	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs62305521	chr4:86980481-86980482	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs150634234	chr4:86980482-86980483	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs564324855	chr4:86980573-86980574	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs187244252	chr4:86980588-86980589	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs555475338	chr4:86980638-86980639	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs564437188	chr4:86980738-86980739	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs191622603	chr4:86980753-86980754	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs529919657	chr4:86980756-86980757	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs577925987	chr4:86980785-86980786	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs548005566	chr4:86980806-86980807	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs111940015	chr4:86980826-86980827	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs530531387	chr4:86980863-86980864	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
27	rs543453976	chr4:86980885-86980886	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
28	rs140924856	chr4:86980902-86980903	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
29	rs733245	chr4:86980929-86980930	Weak transcription Strong transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
30	rs17011349	chr4:86980953-86980954	Weak transcription Strong transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
31	rs552983043	chr4:86980955-86980956	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
32	rs147546763	chr4:86980997-86980998	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
33	rs183828881	chr4:86981027-86981028	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
34	rs557595522	chr4:86981056-86981057	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
35	rs368233196	chr4:86981080-86981081	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
36	rs546075006	chr4:86981093-86981094	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
37	rs558269899	chr4:86981138-86981139	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
38	rs112728809	chr4:86981139-86981140	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
39	rs376932443	chr4:86981141-86981142	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
40	rs201636876	chr4:86981151-86981152	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
41	rs111353477	chr4:86981171-86981172	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
42	rs540261854	chr4:86981188-86981189	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
43	rs529189587	chr4:86981218-86981219	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs542397834	chr4:86981265-86981266	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs529955882	chr4:86981277-86981278	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs73834000	chr4:86981300-86981301	Weak transcription Strong transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
47	rs186750787	chr4:86981332-86981333	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs149885644	chr4:86981351-86981352	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs192682891	chr4:86981391-86981392	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs144884627	chr4:86981392-86981393	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:85)

Disease	PMID	Source
Acute lymphoblastic leukemia	22237106	CNVD
Glioblastoma multiforme	21080181	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Chordoma	21602918	CNVD
HIV/AIDS	22032296	CNVD
Medulloblastoma	21979893	CNVD
Neuroblastoma	18923191	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Intellectual disability	22102821	CNVD
Autism	22495311	CNVD
Breast cancer	21858162	CNVD
Small bowel adenocarcinoma	21586687	CNVD
Gastric cancer	21586687	CNVD
lymphocytic leukemia	21291569	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Melanoma	18172304	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Breast cancer	17603634	CNVD
Parkinson disease	21956041	CNVD
Mental retardation	20522426	CNVD
delayed speech	20522426	CNVD
growth disorder	20522426	CNVD
Hepatocellular carcinoma	16750200	CNVD
Myxofibrosarcoma	16751306	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Parkinson disease	18923514	CNVD
Non-syndromic sensorineural hearing loss	15273396	CNVD
Cancer	21183584	CNVD
Breast cancer	16272173	CNVD
Colorectal cancer	19359472	CNVD
Malignant mesothelioma	18160781	CNVD
Medulloblastoma	18056178	CNVD
Multiple myeloma	17077331	CNVD
Pleural malignant mesothelioma	18160781	CNVD
Primary mediastinal b-cell lymphoma	17728785	CNVD
Oral squamous cell carcinoma	17134496	CNVD
4q-syndrome	17576883	CNVD
Cancer	21637783	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Colorectal cancer	20709793	CNVD
Muscular dystrophy	21149563	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	17387387	CNVD
Hepatocellular carcinoma	22174799	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Cervical cancer	21062161	CNVD
Metanephric adenoma	20802469	CNVD
Breast cancer	16608533	CNVD
Adenoid cystic carcinoma	18698036	CNVD
Lung cancer	19208797	CNVD
Wilms tumour	21544195	CNVD
Breast cancer	21785460	CNVD
Basal cell lymphoma	17170743	CNVD
Follicular lymphoma	17170743	CNVD
Chronic lymphocytic leukemia	20421269	CNVD
Myelodysplastic syndrome	21251322	CNVD
Multiple myeloma	17550852	CNVD
Lung cancer	18438408	CNVD
Chronic lymphocytic leukemia	18922857	CNVD
Cancer	22429812	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Autism	18414403	CNVD
primary effusion lymphomas	17116491	CNVD
Olfactory neuroblastoma	18408657	CNVD
small cell lung cancer	20016488	CNVD
Splenic marginal zone lymphoma	21957467	CNVD
Breast cancer	17133270	CNVD
Myelofibrosis	22110671	CNVD
Breast cancer	22522925	CNVD
Pancreatic cancer	17952125	CNVD
Colorectal cancer	20459617	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD
Cancer	20164919	CNVD
Acute lymphoblastic leukemia	17443227	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD

Chromatin state (count:748 , 50 per page) page: 1 2 3 4 5 6 7 ... 15

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:86916800-86985400	Weak transcription	Ovary	ovary
2	chr4:86936400-86990600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr4:86949200-86988600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr4:86955000-86985000	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr4:86955200-87003800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr4:86958400-86992600	Weak transcription	Fetal Kidney	kidney
7	chr4:86961200-86981000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
8	chr4:86963600-86988800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr4:86965200-86985800	Weak transcription	Adipose Nuclei	Adipose
10	chr4:86965200-86987000	Weak transcription	Brain Substantia Nigra	brain
11	chr4:86970000-86988400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr4:86971800-87003800	Weak transcription	Brain Hippocampus Middle	brain
13	chr4:86975200-87003600	Weak transcription	Stomach Smooth Muscle	stomach
14	chr4:86976000-86984200	Weak transcription	Brain Cingulate Gyrus	brain
15	chr4:86976200-86987800	Weak transcription	Brain Germinal Matrix	brain
16	chr4:86976400-87000200	Weak transcription	Fetal Brain Female	brain
17	chr4:86976800-86986400	Weak transcription	Fetal Brain Male	brain
18	chr4:86977400-87003800	Weak transcription	Brain Anterior Caudate	brain
19	chr4:86978800-86988800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr4:86979400-86980000	Strong transcription	Fetal Stomach	stomach
21	chr4:86979600-86985400	Weak transcription	Aorta	Aorta
22	chr4:86980000-87004000	Weak transcription	Fetal Stomach	stomach
23	chr4:86980800-86981200	Enhancers	Fetal Muscle Leg	muscle
24	chr4:86981000-86981600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
25	chr4:86981600-86987000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
26	chr4:86982200-86983000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr4:86983200-86983400	Enhancers	Fetal Lung	lung
28	chr4:86983400-86986200	Weak transcription	Fetal Lung	lung
29	chr4:86984200-86985800	Strong transcription	Brain Cingulate Gyrus	brain
30	chr4:86985000-86985800	Strong transcription	Brain Inferior Temporal Lobe	brain
31	chr4:86985000-86989000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
32	chr4:86985400-86985600	ZNF genes & repeats	Aorta	Aorta
33	chr4:86985400-86985800	Strong transcription	Ovary	ovary
34	chr4:86985800-86988400	Weak transcription	Brain Inferior Temporal Lobe	brain
35	chr4:86985800-87003600	Weak transcription	Brain Cingulate Gyrus	brain
36	chr4:86985800-87004000	Weak transcription	Ovary	ovary
37	chr4:86988400-86988600	Enhancers	Brain Inferior Temporal Lobe	brain
38	chr4:86988400-86990000	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr4:86988600-86989200	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
40	chr4:86988800-86989200	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr4:86988800-86989200	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
42	chr4:86989200-86996600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
43	chr4:86989200-86998800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
44	chr4:86989200-87004000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr4:86990000-86990400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr4:86990400-86997400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr4:86996600-86997000	Enhancers	iPS-15b Cell Line	embryonic stem cell
48	chr4:86996600-86997800	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
49	chr4:86996800-86997600	Active TSS	ES-I3 Cell Line	embryonic stem cell
50	chr4:86997000-86997600	Active TSS	HUES6 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links