Variant report

Variant	nsv879554
Chromosome Location	chr4:91692287-91731886
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-MMRN1-6	chr4:91701593-91701922	NONHSAT097411

Extended variants
information (count: 842 )
Associated
traits (count: 88 )

Variant overlapped rSNPs/rCNVs (count:842 , 50 per page) page: 1 2 3 4 5 6 7 ... 17

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs976483	chr4:91692287-91692288	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
2	rs189016444	chr4:91692289-91692290	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs112471040	chr4:91692296-91692297	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs187306112	chr4:91692418-91692419	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs371833576	chr4:91692475-91692476	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs539970409	chr4:91692481-91692482	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs192150950	chr4:91692582-91692583	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs62313022	chr4:91692595-91692596	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
9	rs551630200	chr4:91692616-91692617	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs140669423	chr4:91692710-91692711	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs80160889	chr4:91692715-91692716	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs34848155	chr4:91692716-91692717	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs536837493	chr4:91692717-91692718	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs531673583	chr4:91692729-91692730	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs397763864	chr4:91692733-91692734	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs372188933	chr4:91692734-91692735	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs77918553	chr4:91692738-91692739	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs373422022	chr4:91692761-91692762	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs377034382	chr4:91692786-91692787	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs182611141	chr4:91692825-91692826	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs571371621	chr4:91692892-91692893	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs184890666	chr4:91692924-91692925	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs115251273	chr4:91692954-91692955	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs567275268	chr4:91693004-91693005	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs536241321	chr4:91693090-91693091	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs17244954	chr4:91693100-91693101	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs34927557	chr4:91693111-91693112	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs75145613	chr4:91693255-91693256	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs545400040	chr4:91693264-91693265	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs6811504	chr4:91693270-91693271	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
31	rs572562618	chr4:91693271-91693272	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs190285712	chr4:91693303-91693304	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs559990403	chr4:91693386-91693387	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs529041514	chr4:91693430-91693431	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs542631095	chr4:91693469-91693470	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs182487496	chr4:91693522-91693523	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs375917023	chr4:91693572-91693573	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs376703255	chr4:91693590-91693591	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs562493772	chr4:91693597-91693598	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs144355448	chr4:91693652-91693653	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs187483324	chr4:91693668-91693669	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs564739807	chr4:91693677-91693678	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs17185435	chr4:91693756-91693757	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
44	rs10025445	chr4:91693773-91693774	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
45	rs191987570	chr4:91693782-91693783	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs377202721	chr4:91693788-91693789	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs567412675	chr4:91693860-91693861	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs146461302	chr4:91693928-91693929	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs556111385	chr4:91693933-91693934	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs569730325	chr4:91693937-91693938	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:88)

Disease	PMID	Source
Acute lymphoblastic leukemia	22237106	CNVD
Glioblastoma multiforme	21080181	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Chordoma	21602918	CNVD
HIV/AIDS	22032296	CNVD
Medulloblastoma	21979893	CNVD
Neuroblastoma	18923191	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Intellectual disability	22102821	CNVD
Autism	22495311	CNVD
Breast cancer	21858162	CNVD
Small bowel adenocarcinoma	21586687	CNVD
Gastric cancer	21586687	CNVD
lymphocytic leukemia	21291569	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Melanoma	18172304	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Breast cancer	17603634	CNVD
Hepatocellular carcinoma	16750200	CNVD
Myxofibrosarcoma	16751306	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Parkinson disease	18923514	CNVD
Non-syndromic sensorineural hearing loss	15273396	CNVD
Cancer	21183584	CNVD
Breast cancer	16272173	CNVD
Colorectal cancer	19359472	CNVD
Malignant mesothelioma	18160781	CNVD
Medulloblastoma	18056178	CNVD
Multiple myeloma	17077331	CNVD
Pleural malignant mesothelioma	18160781	CNVD
Primary mediastinal b-cell lymphoma	17728785	CNVD
Oral squamous cell carcinoma	17134496	CNVD
4q-syndrome	17576883	CNVD
Cancer	21637783	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Colorectal cancer	20709793	CNVD
Muscular dystrophy	21149563	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	17387387	CNVD
Hepatocellular carcinoma	22174799	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Cervical cancer	21062161	CNVD
Metanephric adenoma	20802469	CNVD
Breast cancer	16608533	CNVD
Adenoid cystic carcinoma	18698036	CNVD
Lung cancer	19208797	CNVD
Wilms tumour	21544195	CNVD
Breast cancer	21785460	CNVD
Chronic lymphocytic leukemia	20421269	CNVD
Myelodysplastic syndrome	21251322	CNVD
Multiple myeloma	17550852	CNVD
Lung cancer	18438408	CNVD
Chronic lymphocytic leukemia	18922857	CNVD
Cancer	22429812	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Autism	18414403	CNVD
primary effusion lymphomas	17116491	CNVD
Mental retardation	20522426	CNVD
delayed speech	20522426	CNVD
growth disorder	20522426	CNVD
Olfactory neuroblastoma	18408657	CNVD
small cell lung cancer	20016488	CNVD
Splenic marginal zone lymphoma	21957467	CNVD
Breast cancer	17133270	CNVD
Colorectal cancer	20459617	CNVD
Acute monocytic leukemia	16498392	CNVD
Multiple myeloma	16616336	CNVD
Esophageal adenocarcinoma	18820669	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Myelofibrosis	22110671	CNVD
Parkinson disease	20877625	CNVD
Hirschsprung''s Disease	21712996	CNVD
Congenital anomalies of the kidney and urinary tract	20505237	CNVD
Breast cancer	17393978	CNVD
Ovarian cancer	21720365	CNVD
Obesity	20622171	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Cancer	20164920	CNVD
Cancer	20164919	CNVD
Breast cancer	22522925	CNVD
Esophageal adenocarcinoma	18519675	CNVD
Cancer	21272361	CNVD

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:91692200-91696600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr4:91696600-91697200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr4:91697000-91697200	Active TSS	Pancreas	Pancrea
4	chr4:91697200-91703600	Weak transcription	Pancreas	Pancrea
5	chr4:91697600-91698200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr4:91698200-91699200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr4:91699200-91699800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr4:91699800-91700800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr4:91700400-91713000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr4:91700800-91701600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr4:91710200-91710600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr4:91713000-91714200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr4:91713600-91714200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr4:91713800-91714000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr4:91713800-91714000	Enhancers	Gastric	stomach
16	chr4:91720200-91720800	ZNF genes & repeats	Pancreas	Pancrea

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