Variant report

Variant	nsv879839
Chromosome Location	chr4:118967196-119010126
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:6)
LncRNA
region (count:2)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:6 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr4:118992934..118995680-chr4:119200278..119203179,2	K562	blood:
2	chr4:118992420..118994434-chr4:119201679..119204386,2	K562	blood:
3	chr4:119002654..119004598-chr4:119011337..119014286,2	K562	blood:
4	chr4:118998092..118998990-chr4:119144854..119145995,8	MCF-7	breast:
5	chr4:118998999..119001085-chr4:119002906..119004997,2	MCF-7	breast:
6	chr4:118998999..119001085-chr4:119002906..119004997,2	MCF-7	breast:

(count:2 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-NDST3-6	chr4:118975004-118975089	NONHSAT097969
2	lnc-NDST3-6	chr4:119010062-119010551	NONHSAT097969

No data

Variant related genes	Relation type
ENSG00000269893	chromatin interactions

Extended variants
information (count: 1549 )
Associated
traits (count: 71 )

Variant overlapped rSNPs/rCNVs (count:1549 , 50 per page) page: 1 2 3 4 5 6 7 ... 31

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs6534079	chr4:118967196-118967197	Weak transcription ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
2	rs535111701	chr4:118967214-118967215	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
3	rs555389739	chr4:118967362-118967363	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
4	rs13133776	chr4:118967376-118967377	Weak transcription ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
5	rs558372010	chr4:118967410-118967411	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
6	rs148028195	chr4:118967414-118967415	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
7	rs544554881	chr4:118967449-118967450	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
8	rs564241622	chr4:118967534-118967535	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
9	rs2389498	chr4:118967536-118967537	Weak transcription ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
10	rs540684091	chr4:118967646-118967647	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs538085299	chr4:118967670-118967671	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs192935337	chr4:118967738-118967739	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs185141045	chr4:118967767-118967768	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs572714519	chr4:118967804-118967805	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs549104319	chr4:118967827-118967828	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs190431700	chr4:118967838-118967839	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs369941887	chr4:118967848-118967849	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs377410772	chr4:118967849-118967850	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs74526713	chr4:118967861-118967862	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs571477684	chr4:118967918-118967919	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs534127118	chr4:118968035-118968036	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs368293133	chr4:118968053-118968054	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs72524667	chr4:118968077-118968078	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs386401272	chr4:118968078-118968079	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs374970883	chr4:118968079-118968080	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs141752678	chr4:118968101-118968102	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs150144709	chr4:118968154-118968155	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs544043111	chr4:118968157-118968158	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs80010114	chr4:118968163-118968164	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs563924233	chr4:118968174-118968175	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs568889153	chr4:118968244-118968245	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
32	rs182020059	chr4:118968277-118968278	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
33	rs558086811	chr4:118968283-118968284	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
34	rs10029850	chr4:118968291-118968292	Weak transcription ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
35	rs138629466	chr4:118968295-118968296	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
36	rs141856110	chr4:118968296-118968297	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
37	rs146171535	chr4:118968324-118968325	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
38	rs543140786	chr4:118968401-118968402	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
39	rs562705529	chr4:118968411-118968412	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
40	rs531617811	chr4:118968428-118968429	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
41	rs77082848	chr4:118968438-118968439	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
42	rs565245542	chr4:118968460-118968461	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
43	rs375781523	chr4:118968462-118968463	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
44	rs115809598	chr4:118968479-118968480	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
45	rs368856780	chr4:118968522-118968523	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
46	rs185048770	chr4:118968600-118968601	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
47	rs567885382	chr4:118968650-118968651	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
48	rs528950057	chr4:118968681-118968682	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
49	rs549086342	chr4:118968693-118968694	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
50	rs568823892	chr4:118968703-118968704	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:71)

Disease	PMID	Source
Acute lymphoblastic leukemia	22237106	CNVD
Glioblastoma multiforme	21080181	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Chordoma	21602918	CNVD
HIV/AIDS	22032296	CNVD
Medulloblastoma	21979893	CNVD
Neuroblastoma	18923191	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Intellectual disability	22102821	CNVD
Autism	22495311	CNVD
Breast cancer	21858162	CNVD
Small bowel adenocarcinoma	21586687	CNVD
Gastric cancer	21586687	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Melanoma	18172304	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Breast cancer	17603634	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Breast cancer	16272173	CNVD
Colorectal cancer	19359472	CNVD
Malignant mesothelioma	18160781	CNVD
Medulloblastoma	18056178	CNVD
Multiple myeloma	17077331	CNVD
Pleural malignant mesothelioma	18160781	CNVD
Primary mediastinal b-cell lymphoma	17728785	CNVD
Oral squamous cell carcinoma	17134496	CNVD
4q-syndrome	17576883	CNVD
Cancer	21637783	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Colorectal cancer	20709793	CNVD
Muscular dystrophy	21149563	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	17387387	CNVD
Hepatocellular carcinoma	22174799	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Cervical cancer	21062161	CNVD
Metanephric adenoma	20802469	CNVD
Breast cancer	16608533	CNVD
Adenoid cystic carcinoma	18698036	CNVD
Lung cancer	19208797	CNVD
Wilms tumour	21544195	CNVD
Breast cancer	21785460	CNVD
Myelodysplastic syndrome	21251322	CNVD
Lung cancer	18438408	CNVD
Cancer	22429812	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Cancer	21183584	CNVD
primary effusion lymphomas	17116491	CNVD
Splenic marginal zone lymphoma	21957467	CNVD
Breast cancer	17133270	CNVD
Colorectal cancer	20459617	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Congenital anomalies of the kidney and urinary tract	20505237	CNVD
Breast cancer	17393978	CNVD
Esophageal cancer	21851588	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Colorectal cancer	16272173	CNVD
Testicular germ cell tumor	18059402	CNVD
Ovarian cancer	22174824	CNVD
Cutaneous T-cell lymphoma	21881587	CNVD
Myelofibrosis	22110671	CNVD
Neuroblastoma	21899760	CNVD
small cell lung cancer	20016488	CNVD
Renal cell carcinoma	18194544	CNVD
Autism	19246517	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD

Chromatin state (count:86 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:118955800-118967200	Weak transcription	Fetal Stomach	stomach
2	chr4:118956600-118967200	Weak transcription	Fetal Thymus	thymus
3	chr4:118958800-118968800	Weak transcription	Brain Anterior Caudate	brain
4	chr4:118962200-118969600	ZNF genes & repeats	Dnd41	blood
5	chr4:118962400-118967400	Weak transcription	Thymus	Thymus
6	chr4:118964800-118969200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr4:118967000-118968200	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr4:118967200-118968200	ZNF genes & repeats	Fetal Stomach	stomach
9	chr4:118967200-118968200	ZNF genes & repeats	Fetal Thymus	thymus
10	chr4:118967400-118967800	ZNF genes & repeats	Thymus	Thymus
11	chr4:118967600-118968200	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr4:118968200-118968800	Weak transcription	Fetal Thymus	thymus
13	chr4:118970800-118972800	ZNF genes & repeats	Dnd41	blood
14	chr4:118972800-118974000	Strong transcription	Dnd41	blood
15	chr4:118974000-118974400	ZNF genes & repeats	Dnd41	blood
16	chr4:118974400-118975000	Strong transcription	Dnd41	blood
17	chr4:118975000-118976800	Genic enhancers	Dnd41	blood
18	chr4:118976800-118977800	Weak transcription	Dnd41	blood
19	chr4:118977800-118979200	Genic enhancers	Dnd41	blood
20	chr4:118978800-118979400	Enhancers	HUES48 Cell Line	embryonic stem cell
21	chr4:118979200-118987000	Strong transcription	Dnd41	blood
22	chr4:118979400-118979800	Weak transcription	HUES48 Cell Line	embryonic stem cell
23	chr4:118979400-118980800	Enhancers	HUES64 Cell Line	embryonic stem cell
24	chr4:118979800-118980800	Enhancers	ES-I3 Cell Line	embryonic stem cell
25	chr4:118979800-118980800	Enhancers	HUES6 Cell Line	embryonic stem cell
26	chr4:118979800-118980800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
27	chr4:118979800-118981000	Enhancers	HUES48 Cell Line	embryonic stem cell
28	chr4:118980000-118980600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
29	chr4:118980200-118980600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr4:118980400-118980800	Enhancers	iPS-20b Cell Line	embryonic stem cell
31	chr4:118987000-118988600	Weak transcription	Dnd41	blood
32	chr4:118988600-118990400	Strong transcription	Dnd41	blood
33	chr4:118988800-118989000	Bivalent Enhancer	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
34	chr4:118990400-118991400	Weak transcription	Dnd41	blood
35	chr4:118991400-118991600	ZNF genes & repeats	Dnd41	blood
36	chr4:118991600-118992400	Weak transcription	Dnd41	blood
37	chr4:118992400-118994000	ZNF genes & repeats	Dnd41	blood
38	chr4:118994000-118995000	Weak transcription	Dnd41	blood
39	chr4:118995000-118996000	ZNF genes & repeats	Dnd41	blood
40	chr4:118996000-118997400	Weak transcription	Dnd41	blood
41	chr4:118997400-118999000	Genic enhancers	Dnd41	blood
42	chr4:118998200-118999000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
43	chr4:118998200-118999000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
44	chr4:118998600-118999200	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
45	chr4:118999000-119002200	Weak transcription	Dnd41	blood
46	chr4:119002200-119002600	Genic enhancers	Dnd41	blood
47	chr4:119002600-119002800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
48	chr4:119002600-119003200	Enhancers	HUES48 Cell Line	embryonic stem cell
49	chr4:119002600-119007600	Strong transcription	Dnd41	blood
50	chr4:119003200-119003800	Enhancers	HUES6 Cell Line	embryonic stem cell

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