Variant report

Variant	nsv880293
Chromosome Location	chr4:159012365-159049020
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:32)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:1)

No data

(count:32 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr4:159015945..159016533-chr4:159082522..159083060,2	MCF-7	breast:
2	chr4:159014314..159015916-chr4:159095992..159097811,2	MCF-7	breast:
3	chr4:158996551..158999550-chr4:159014208..159016080,2	MCF-7	breast:
4	chr4:159015350..159017695-chr4:159032159..159035060,3	MCF-7	breast:
5	chr4:159010502..159012661-chr4:159014631..159016735,2	MCF-7	breast:
6	chr4:158912571..158916849-chr4:159013907..159018478,8	MCF-7	breast:
7	chr4:158917615..158918337-chr4:159015526..159016398,2	MCF-7	breast:
8	chr4:159042649..159044924-chr4:159061563..159064027,2	MCF-7	breast:
9	chr4:159015350..159017695-chr4:159032159..159035060,3	MCF-7	breast:
10	chr4:159020840..159022631-chr4:159080175..159082579,2	MCF-7	breast:
11	chr4:159035966..159038109-chr4:159085768..159087308,2	MCF-7	breast:
12	chr4:159036873..159039591-chr4:159040527..159042688,2	MCF-7	breast:
13	chr4:159012937..159016696-chr4:159087571..159091012,3	MCF-7	breast:
14	chr4:159017530..159020333-chr4:159021584..159024507,2	MCF-7	breast:
15	chr4:158916515..158919078-chr4:159032970..159035902,2	K562	blood:
16	chr4:159010781..159012395-chr4:159090900..159093537,2	MCF-7	breast:
17	chr4:159040586..159043659-chr4:159090356..159092814,3	MCF-7	breast:
18	chr4:159010029..159020346-chr4:159088735..159099117,18	MCF-7	breast:
19	chr4:159017530..159020333-chr4:159021584..159024507,2	MCF-7	breast:
20	chr4:159031275..159033687-chr4:159053603..159055452,2	MCF-7	breast:
21	chr4:159014385..159016745-chr4:159041064..159043729,3	MCF-7	breast:
22	chr4:159041667..159043431-chr4:159082269..159084157,2	MCF-7	breast:
23	chr4:159014385..159016745-chr4:159041064..159043729,3	MCF-7	breast:
24	chr4:159041377..159043283-chr4:159093182..159095252,2	MCF-7	breast:
25	chr4:159013245..159018298-chr4:159091169..159093561,5	MCF-7	breast:
26	chr4:158912447..158914519-chr4:159011128..159013827,2	MCF-7	breast:
27	chr4:159011423..159013282-chr4:159081920..159084638,2	MCF-7	breast:
28	chr4:158999977..159001907-chr4:159015596..159017167,2	MCF-7	breast:
29	chr4:159010502..159012661-chr4:159014631..159016735,2	MCF-7	breast:
30	chr4:158912471..158914570-chr4:159016207..159019038,2	MCF-7	breast:
31	chr4:159036873..159039591-chr4:159040527..159042688,2	MCF-7	breast:
32	chr4:159013562..159016824-chr4:159081048..159085392,5	MCF-7	breast:

No data

(count:1 , 50 per page) page: 1

No.	miRNA target gene	miRNA name	Chromosome Location	mirBase accession
1	FAM198B	hsa-miR-26b-5p	chr4:159048356-159048376

Variant related genes	Relation type
ENSG00000164125	chromatin interactions
ENSG00000248429	chromatin interactions

Extended variants
information (count: 1490 )
Associated
traits (count: 75 )

Variant overlapped rSNPs/rCNVs (count:1490 , 50 per page) page: 1 2 3 4 5 6 7 ... 30

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs6536298	chr4:159012365-159012366	Weak transcription	Chromatin interactive region	2 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
2	rs553623097	chr4:159012383-159012384	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
3	rs578069046	chr4:159012434-159012435	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
4	rs534208927	chr4:159012438-159012439	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
5	rs141218619	chr4:159012457-159012458	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
6	rs80219911	chr4:159012459-159012460	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
7	rs552281456	chr4:159012468-159012469	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
8	rs187880395	chr4:159012493-159012494	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
9	rs571692103	chr4:159012539-159012540	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
10	rs541520639	chr4:159012542-159012543	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
11	rs570659690	chr4:159012546-159012547	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
12	rs78384868	chr4:159012547-159012548	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
13	rs145146440	chr4:159012558-159012559	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
14	rs533090542	chr4:159012580-159012581	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
15	rs543163982	chr4:159012596-159012597	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
16	rs563424550	chr4:159012627-159012628	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
17	rs114071627	chr4:159012645-159012646	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
18	rs13101806	chr4:159012662-159012663	Weak transcription	Chromatin interactive region	2 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
19	rs566012047	chr4:159012693-159012694	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
20	rs528453172	chr4:159012773-159012774	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
21	rs551799281	chr4:159012806-159012807	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
22	rs571639801	chr4:159012853-159012854	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
23	rs192969242	chr4:159012903-159012904	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
24	rs557056346	chr4:159012933-159012934	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
25	rs142130386	chr4:159012949-159012950	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
26	rs536484032	chr4:159012952-159012953	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
27	rs553231297	chr4:159012991-159012992	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
28	rs573249642	chr4:159012995-159012996	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
29	rs185108253	chr4:159013029-159013030	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
30	rs189101357	chr4:159013098-159013099	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
31	rs116143125	chr4:159013102-159013103	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
32	rs577566518	chr4:159013214-159013215	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
33	rs375410531	chr4:159013258-159013259	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
34	rs11100149	chr4:159013290-159013291	Weak transcription	Chromatin interactive region	2 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
35	rs563386593	chr4:159013336-159013337	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
36	rs529081416	chr4:159013343-159013344	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
37	rs111969879	chr4:159013355-159013356	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
38	rs540900452	chr4:159013366-159013367	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
39	rs528283101	chr4:159013421-159013422	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
40	rs146373592	chr4:159013442-159013443	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
41	rs572193407	chr4:159013489-159013490	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
42	rs373522819	chr4:159013531-159013532	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
43	rs551396323	chr4:159013545-159013546	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
44	rs114250029	chr4:159013546-159013547	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
45	rs10005547	chr4:159013559-159013560	Weak transcription	Chromatin interactive region	2 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
46	rs550646833	chr4:159013563-159013564	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
47	rs9993747	chr4:159013573-159013574	Weak transcription	Chromatin interactive region	2 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
48	rs536446425	chr4:159013579-159013580	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
49	rs553192813	chr4:159013608-159013609	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
50	rs141011514	chr4:159013620-159013621	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:75)

Disease	PMID	Source
Acute lymphoblastic leukemia	22237106	CNVD
Glioblastoma multiforme	21080181	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Chordoma	21602918	CNVD
HIV/AIDS	22032296	CNVD
Medulloblastoma	21979893	CNVD
Neuroblastoma	18923191	CNVD
Breast cancer	21858162	CNVD
Small bowel adenocarcinoma	21586687	CNVD
Gastric cancer	21586687	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Breast cancer	17603634	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Colorectal cancer	19359472	CNVD
Malignant mesothelioma	18160781	CNVD
Medulloblastoma	18056178	CNVD
Multiple myeloma	17077331	CNVD
Pleural malignant mesothelioma	18160781	CNVD
Primary mediastinal b-cell lymphoma	17728785	CNVD
Oral squamous cell carcinoma	17134496	CNVD
4q-syndrome	17576883	CNVD
Cancer	21637783	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Colorectal cancer	20709793	CNVD
Muscular dystrophy	21149563	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	17387387	CNVD
Hepatocellular carcinoma	22174799	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Cervical cancer	21062161	CNVD
Metanephric adenoma	20802469	CNVD
Breast cancer	16608533	CNVD
Lung cancer	19208797	CNVD
Wilms tumour	21544195	CNVD
Lung cancer	18438408	CNVD
Cancer	22429812	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
primary effusion lymphomas	17116491	CNVD
Breast cancer	16272173	CNVD
Splenic marginal zone lymphoma	21957467	CNVD
Breast cancer	17133270	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Congenital anomalies of the kidney and urinary tract	20505237	CNVD
Breast cancer	17393978	CNVD
Esophageal cancer	21851588	CNVD
Testicular germ cell tumor	18059402	CNVD
Ovarian cancer	22174824	CNVD
Olfactory neuroblastoma	18408657	CNVD
Breast cancer	21785460	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Hodgkin''s lymphoma	17606441	CNVD
small cell lung cancer	20016488	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
Ewing''s sarcoma	17952124	CNVD
Breast cancer	21633010	CNVD
T-cell acute lymphoblastic leukemia	18185524	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Cancer	20581869	CNVD
Myelofibrosis	22110671	CNVD
Chronic lymphocytic leukemia	18922857	CNVD
Glioblastoma multiforme	22286061	CNVD
Breast cancer	20409316	CNVD
Basal cell lymphoma	17053054	CNVD
Hepatocellular carcinoma	16750200	CNVD
Cancer	20164919	CNVD
Ovarian clear cell carcinoma	21343371	CNVD
Breast cancer	21364760	CNVD
Autism	20841430	CNVD

Chromatin state (count:309 , 50 per page) page: 1 2 3 4 5 6 7

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:159011800-159014200	Weak transcription	Ovary	ovary
2	chr4:159011800-159014600	Weak transcription	Muscle Satellite Cultured Cells	--
3	chr4:159011800-159015000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr4:159011800-159015400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr4:159011800-159015400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr4:159011800-159015800	Weak transcription	HSMMtube	muscle
7	chr4:159012000-159015000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr4:159012000-159015200	Weak transcription	Osteobl	bone
9	chr4:159012000-159015400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr4:159012200-159015600	Weak transcription	A549	lung
11	chr4:159014000-159014200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
12	chr4:159014200-159014600	Enhancers	Monocytes-CD14+_RO01746	blood
13	chr4:159014200-159015000	Enhancers	Ovary	ovary
14	chr4:159014200-159015200	Enhancers	HMEC	breast
15	chr4:159014200-159015800	Enhancers	Breast Myoepithelial Primary Cells	Breast
16	chr4:159014200-159016800	Enhancers	Placenta Amnion	Placenta Amnion
17	chr4:159014200-159017000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr4:159014400-159015400	Enhancers	NHEK	skin
19	chr4:159014400-159017200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
20	chr4:159014600-159016600	Enhancers	Muscle Satellite Cultured Cells	--
21	chr4:159014600-159016800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr4:159014600-159017000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr4:159014600-159017000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr4:159015000-159015400	Enhancers	Placenta	Placenta
25	chr4:159015000-159016000	Weak transcription	Ovary	ovary
26	chr4:159015000-159016200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr4:159015000-159016600	Enhancers	HSMM	muscle
28	chr4:159015000-159016800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr4:159015000-159017000	Enhancers	NH-A	brain
30	chr4:159015200-159015800	Enhancers	Fetal Heart	heart
31	chr4:159015200-159016000	Flanking Active TSS	HMEC	breast
32	chr4:159015200-159016600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr4:159015200-159016600	Enhancers	NHDF-Ad	bronchial
34	chr4:159015200-159016600	Enhancers	Osteobl	bone
35	chr4:159015400-159015800	Weak transcription	Placenta	Placenta
36	chr4:159015400-159016000	Enhancers	Adipose Nuclei	Adipose
37	chr4:159015400-159016200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
38	chr4:159015400-159016400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr4:159015400-159016400	Flanking Active TSS	NHEK	skin
40	chr4:159015400-159016800	Enhancers	HUVEC	blood vessel
41	chr4:159015400-159017000	Enhancers	ES-I3 Cell Line	embryonic stem cell
42	chr4:159015400-159017000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
43	chr4:159015600-159016000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
44	chr4:159015600-159016000	Flanking Active TSS	A549	lung
45	chr4:159015800-159016200	Enhancers	H1 Cell Line	embryonic stem cell
46	chr4:159015800-159016200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr4:159015800-159016200	Enhancers	HUES6 Cell Line	embryonic stem cell
48	chr4:159015800-159016200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
49	chr4:159015800-159016200	Enhancers	HepG2	liver
50	chr4:159015800-159016200	Enhancers	HSMMtube	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links