Variant report

Variant nsv880611
Chromosome Location chr5:17598539-17697797
allele n/a
Outlinks Ensembl   UCSC
Chromatin state (count:61 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:17593600-17598800 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
2 chr5:17604200-17604600 Enhancers Lung lung
3 chr5:17604200-17604600 Enhancers Hela-S3 cervix
4 chr5:17607400-17607600 Enhancers H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
5 chr5:17616600-17616800 ZNF genes & repeats Brain Hippocampus Middle brain
6 chr5:17619200-17620600 Enhancers Hela-S3 cervix
7 chr5:17620600-17621000 Enhancers iPS DF 19.11 Cell Line embryonic stem cell
8 chr5:17639200-17640000 Enhancers Liver Liver
9 chr5:17652200-17652400 Enhancers HSMM muscle
10 chr5:17662200-17662800 Enhancers hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
11 chr5:17662800-17663000 Enhancers H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
12 chr5:17662800-17663400 Enhancers Fetal Muscle Trunk muscle
13 chr5:17663000-17669200 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
14 chr5:17664200-17664800 Enhancers H9 Cell Line embryonic stem cell
15 chr5:17664200-17665400 Enhancers HUES64 Cell Line embryonic stem cell
16 chr5:17664200-17665600 Enhancers iPS-18 Cell Line embryonic stem cell
17 chr5:17664200-17665800 Enhancers ES-UCSF4 Cell Line embryonic stem cell
18 chr5:17664400-17664800 Enhancers ES-I3 Cell Line embryonic stem cell
19 chr5:17664400-17664800 Enhancers HUES6 Cell Line embryonic stem cell
20 chr5:17664400-17665000 Enhancers hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
21 chr5:17664400-17665000 Enhancers iPS-15b Cell Line embryonic stem cell
22 chr5:17664400-17665800 Enhancers HUES48 Cell Line embryonic stem cell
23 chr5:17664600-17664800 Enhancers hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
24 chr5:17664800-17665800 Enhancers iPS-20b Cell Line embryonic stem cell
25 chr5:17665600-17668000 Enhancers Primary B cells from cord blood blood
26 chr5:17666000-17668000 Enhancers Primary B cells from peripheral blood blood
27 chr5:17670400-17670800 Enhancers iPS DF 19.11 Cell Line embryonic stem cell
28 chr5:17678800-17680000 Enhancers Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
29 chr5:17678800-17680000 Enhancers Foreskin Keratinocyte Primary Cells skin02 Skin
30 chr5:17678800-17680800 Enhancers HMEC breast
31 chr5:17678800-17681400 Enhancers Hela-S3 cervix
32 chr5:17679000-17680600 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
33 chr5:17679200-17680800 Enhancers A549 lung
34 chr5:17679600-17680000 Enhancers Foreskin Melanocyte Primary Cells skin03 Skin
35 chr5:17679600-17680600 Enhancers Foreskin Keratinocyte Primary Cells skin03 Skin
36 chr5:17679800-17680200 Enhancers NHEK skin
37 chr5:17681400-17684400 Weak transcription Hela-S3 cervix
38 chr5:17682800-17683000 Enhancers Ovary ovary
39 chr5:17683000-17684400 Weak transcription Ovary ovary
40 chr5:17684400-17684800 Flanking Active TSS Ovary ovary
41 chr5:17684400-17685200 Active TSS Hela-S3 cervix
42 chr5:17684800-17685200 Enhancers Ovary ovary
43 chr5:17690200-17690800 Enhancers Ganglion Eminence derived primary cultured neurospheres brain
44 chr5:17690200-17690800 Enhancers Sigmoid Colon Sigmoid Colon
45 chr5:17690200-17691600 Enhancers H9 Derived Neuron Cultured Cells ES cell derived
46 chr5:17691400-17697000 Enhancers Hela-S3 cervix
47 chr5:17692000-17692200 Enhancers HMEC breast
48 chr5:17692200-17692400 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
49 chr5:17692200-17692600 Enhancers Placenta Placenta
50 chr5:17692600-17694200 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast

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